Package org.gbif.api.vocabulary

Enum Class NameType

java.lang.Object
java.lang.Enum<NameType>
org.gbif.api.vocabulary.NameType
All Implemented Interfaces:
Serializable, Comparable<NameType>, Constable
@Deprecated public enum NameType extends Enum<NameType>
Deprecated.
A short classification of scientific name strings used in Checklist Bank. Deprecated. Please use the name parser enum instead. https://github.com/gbif/name-parser/blob/master/name-parser-api/src/main/java/org/gbif/nameparser/api/NameType.java

  • Nested Class Summary

    Nested classes/interfaces inherited from class java.lang.Enum

    Enum.EnumDesc<E extends Enum<E>>

  • Enum Constant Summary

    Enum Constants
    Enum Constant
    Description
    BLACKLISTED
    Deprecated.
    A name that has been flagged by the name parser due to the use of blacklisted epithets/words.
    CANDIDATUS
    Deprecated.
    Candidatus is a component of the taxonomic name for a bacterium that cannot be maintained in a Bacteriology Culture Collection.
    CULTIVAR
    Deprecated.
    A cultivated plant name.
    DOUBTFUL
    Deprecated.
    Doubtful whether this is a scientific name at all.
    HYBRID
    Deprecated.
    A hybrid formula (not a hybrid name).
    INFORMAL
    Deprecated.
    A scientific name with some informal addition like "cf." or indetermined like Abies spec.
    NO_NAME
    Deprecated.
    Surely not a scientific name of any kind.
    OTU
    Deprecated.
    Operational Taxonomic Unit.
    PLACEHOLDER
    Deprecated.
    A placeholder name like "incertae sedis" or "unknown genus".
    SCIENTIFIC
    Deprecated.
    A scientific latin name that might contain authorship but is not any of the other name types below (virus, hybrid, cultivar, etc).
    VIRUS
    Deprecated.
    A virus name.

  • Method Summary

    Modifier and Type
    Method
    Description
    static NameType
    fromString(String nameType)
    Deprecated.
    Case insensitive lookup of a name type by its name that does not throw an exception but returns null for not found name types.
    boolean
    isBackboneType()
    Deprecated.
     
    boolean
    isParsable()
    Deprecated.
     
    static NameType
    valueOf(String name)
    Deprecated.
    Returns the enum constant of this class with the specified name.
    static NameType[]
    values()
    Deprecated.
    Returns an array containing the constants of this enum class, in the order they are declared.

    Methods inherited from class java.lang.Enum

    compareTo, describeConstable, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

    Methods inherited from class java.lang.Object

    getClass, notify, notifyAll, wait, wait, wait

  • Enum Constant Details

    • SCIENTIFIC

      public static final NameType SCIENTIFIC
      Deprecated.
      A scientific latin name that might contain authorship but is not any of the other name types below (virus, hybrid, cultivar, etc).

    • VIRUS

      public static final NameType VIRUS
      Deprecated.
      A virus name.

    • HYBRID

      public static final NameType HYBRID
      Deprecated.
      A hybrid formula (not a hybrid name).

    • INFORMAL

      public static final NameType INFORMAL
      Deprecated.
      A scientific name with some informal addition like "cf." or indetermined like Abies spec.

    • CULTIVAR

      public static final NameType CULTIVAR
      Deprecated.
      A cultivated plant name.

    • CANDIDATUS

      public static final NameType CANDIDATUS
      Deprecated.
      Candidatus is a component of the taxonomic name for a bacterium that cannot be maintained in a Bacteriology Culture Collection. It is an interim taxonomic status for noncultivable organisms. An example would be "Candidatus Phytoplasma allocasuarinae". This can be abbreviated to "Ca. Phytoplasma allocasuarinae".
      See Also:

    • OTU

      public static final NameType OTU
      Deprecated.
      Operational Taxonomic Unit. An OTU is a pragmatic definition to group individuals by similarity, equivalent to but not necessarily in line with classical Linnaean taxonomy or modern Evolutionary taxonomy. A OTU usually refers to clusters of organisms, grouped by DNA sequence similarity of a specific taxonomic marker gene. In other words, OTUs are pragmatic proxies for "species" at different taxonomic levels. Sequences can be clustered according to their similarity to one another, and operational taxonomic units are defined based on the similarity threshold (usually 97% similarity) set by the researcher. Typically, OTU's are based on similar 16S rRNA sequences.

    • DOUBTFUL

      public static final NameType DOUBTFUL
      Deprecated.
      Doubtful whether this is a scientific name at all.

    • PLACEHOLDER

      public static final NameType PLACEHOLDER
      Deprecated.
      A placeholder name like "incertae sedis" or "unknown genus".

    • NO_NAME

      public static final NameType NO_NAME
      Deprecated.
      Surely not a scientific name of any kind.

    • BLACKLISTED

      public static final NameType BLACKLISTED
      Deprecated.
      A name that has been flagged by the name parser due to the use of blacklisted epithets/words.

  • Method Details

    • values

      public static NameType[] values()
      Deprecated.
      Returns an array containing the constants of this enum class, in the order they are declared.
      Returns:
      an array containing the constants of this enum class, in the order they are declared

    • valueOf

      public static NameType valueOf(String name)
      Deprecated.
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null

    • fromString

      public static NameType fromString(String nameType)
      Deprecated.
      Case insensitive lookup of a name type by its name that does not throw an exception but returns null for not found name types.
      Parameters:
      nameType - case insensitive name of name type
      Returns:
      the matching NameType or null

    • isBackboneType

      public boolean isBackboneType()
      Deprecated.
      Returns:
      true if the type of name is included in the GBIF backbone

    • isParsable

      public boolean isParsable()
      Deprecated.
      Returns:
      true if the GBIF name parser can parse such a name into a ParsedName instance