org.gbif.dwc.terms.MixsTerm

All Implemented Interfaces:: Serializable, Comparable<MixsTerm>, Constable, AlternativeNames, Term

public enum MixsTerm extends Enum<MixsTerm> implements Term, AlternativeNames, Serializable

All GenSC (Genomics Standards Consortium) Minimum Information about any Sequence (MIxS) terms with namespace https://w3id.org/mixs/ or https://w3id.org/gensc/terms/MIXS:. Note URIs here must use the https://w3id.org/mixs/0000001 form, but we keep the simple name for casual use (the enum names, the simpleName for CSV headers etc). See https://genomicsstandardsconsortium.github.io/mixs/ See https://github.com/GenomicsStandardsConsortium/mixs/blob/main/src/mixs/schema/mixs.yaml

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>>
Enum Constant Summary

Enum Constants

Enum Constant

Description

_16s_recover

_16s_recover_software

adapters

annot

assembly_name

assembly_qual

assembly_software

associated_resource

bin_param

bin_software

biotic_relationship

chimera_check

compl_appr

compl_score

compl_software

contam_score

contam_screen_input

contam_screen_param

decontam_software

detec_type

encoded_traits

env_broad_scale

env_local_scale

env_medium

estimated_size

experimental_factor

extrachrom_elements

feat_pred

host_disease_stat

host_pred_appr

host_pred_est_acc

host_spec_range

isol_growth_condt

lib_layout

lib_reads_seqd

lib_screen

lib_size

lib_vector

mag_cov_software

mid

nucl_acid_amp

nucl_acid_ext

num_replicons

number_contig

otu_class_appr

otu_db

otu_seq_comp_appr

pathogenicity

pcr_cond

pcr_primers

ploidy

pool_dna_extracts

pred_genome_struc

pred_genome_type

project_name

propagation

reassembly_bin

ref_biomaterial

ref_db

rel_to_oxygen

samp_collect_device

samp_collect_method

samp_mat_process

samp_name

samp_size

samp_vol_we_dna_ext

sc_lysis_approach

sc_lysis_method

seq_meth

seq_quality_check

sieving

sim_search_meth

size_frac

sop

sort_tech

source_mat_id

source_uvig

specific_host

subspecf_gen_lin

target_gene

target_subfragment

tax_class

tax_ident

trna_ext_software

trnas

trophic_level

vir_ident_software

virus_enrich_appr

wga_amp_appr

wga_amp_kit
Field Summary

Fields

Modifier and Type

Field

Description

final String[]

alternatives
Method Summary

Modifier and Type

Method

Description

String[]

alternativeNames()

boolean

isClass()

Informs if a term is generally used as a class term, i.e.

URI

namespace()

The namespace the terms are in.

String

prefix()

A unique standard prefix representing the namespace.

String

qualifiedName()

The full qualified term uri including the namespace.

String

simpleName()

The simple term name without any namespace or paths.

String

toString()

static MixsTerm

valueOf(String name)

Returns the enum constant of this class with the specified name.

static MixsTerm[]

values()

Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum
compareTo, describeConstable, equals, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.gbif.dwc.terms.Term
prefixedName

Enum Constant Details
- samp_size
  
  public static final MixsTerm samp_size
- samp_collect_device
  
  public static final MixsTerm samp_collect_device
- isol_growth_condt
  
  public static final MixsTerm isol_growth_condt
- contam_screen_input
  
  public static final MixsTerm contam_screen_input
- wga_amp_kit
  
  public static final MixsTerm wga_amp_kit
- experimental_factor
  
  public static final MixsTerm experimental_factor
- env_broad_scale
  
  public static final MixsTerm env_broad_scale
- env_local_scale
  
  public static final MixsTerm env_local_scale
- env_medium
  
  public static final MixsTerm env_medium
- rel_to_oxygen
  
  public static final MixsTerm rel_to_oxygen
- samp_mat_process
  
  public static final MixsTerm samp_mat_process
- size_frac
  
  public static final MixsTerm size_frac
- subspecf_gen_lin
  
  public static final MixsTerm subspecf_gen_lin
- ploidy
  
  public static final MixsTerm ploidy
- num_replicons
  
  public static final MixsTerm num_replicons
- extrachrom_elements
  
  public static final MixsTerm extrachrom_elements
- estimated_size
  
  public static final MixsTerm estimated_size
- ref_biomaterial
  
  public static final MixsTerm ref_biomaterial
- source_mat_id
  
  public static final MixsTerm source_mat_id
- pathogenicity
  
  public static final MixsTerm pathogenicity
- biotic_relationship
  
  public static final MixsTerm biotic_relationship
- specific_host
  
  public static final MixsTerm specific_host
- host_spec_range
  
  public static final MixsTerm host_spec_range
- host_disease_stat
  
  public static final MixsTerm host_disease_stat
- trophic_level
  
  public static final MixsTerm trophic_level
- propagation
  
  public static final MixsTerm propagation
- encoded_traits
  
  public static final MixsTerm encoded_traits
- source_uvig
  
  public static final MixsTerm source_uvig
- virus_enrich_appr
  
  public static final MixsTerm virus_enrich_appr
- nucl_acid_ext
  
  public static final MixsTerm nucl_acid_ext
- nucl_acid_amp
  
  public static final MixsTerm nucl_acid_amp
- lib_size
  
  public static final MixsTerm lib_size
- lib_reads_seqd
  
  public static final MixsTerm lib_reads_seqd
- lib_layout
  
  public static final MixsTerm lib_layout
- lib_vector
  
  public static final MixsTerm lib_vector
- lib_screen
  
  public static final MixsTerm lib_screen
- target_gene
  
  public static final MixsTerm target_gene
- target_subfragment
  
  public static final MixsTerm target_subfragment
- pcr_primers
  
  public static final MixsTerm pcr_primers
- mid
  
  public static final MixsTerm mid
- adapters
  
  public static final MixsTerm adapters
- pcr_cond
  
  public static final MixsTerm pcr_cond
- seq_meth
  
  public static final MixsTerm seq_meth
- seq_quality_check
  
  public static final MixsTerm seq_quality_check
- chimera_check
  
  public static final MixsTerm chimera_check
- tax_ident
  
  public static final MixsTerm tax_ident
- sc_lysis_method
  
  public static final MixsTerm sc_lysis_method
- wga_amp_appr
  
  public static final MixsTerm wga_amp_appr
- assembly_qual
  
  public static final MixsTerm assembly_qual
- assembly_name
  
  public static final MixsTerm assembly_name
- assembly_software
  
  public static final MixsTerm assembly_software
- annot
  
  public static final MixsTerm annot
- number_contig
  
  public static final MixsTerm number_contig
- feat_pred
  
  public static final MixsTerm feat_pred
- ref_db
  
  public static final MixsTerm ref_db
- sim_search_meth
  
  public static final MixsTerm sim_search_meth
- tax_class
  
  public static final MixsTerm tax_class
- _16s_recover
  
  public static final MixsTerm _16s_recover
- _16s_recover_software
  
  public static final MixsTerm _16s_recover_software
- trnas
  
  public static final MixsTerm trnas
- trna_ext_software
  
  public static final MixsTerm trna_ext_software
- compl_score
  
  public static final MixsTerm compl_score
- compl_software
  
  public static final MixsTerm compl_software
- compl_appr
  
  public static final MixsTerm compl_appr
- contam_score
  
  public static final MixsTerm contam_score
- contam_screen_param
  
  public static final MixsTerm contam_screen_param
- decontam_software
  
  public static final MixsTerm decontam_software
- sort_tech
  
  public static final MixsTerm sort_tech
- sc_lysis_approach
  
  public static final MixsTerm sc_lysis_approach
- bin_param
  
  public static final MixsTerm bin_param
- bin_software
  
  public static final MixsTerm bin_software
- reassembly_bin
  
  public static final MixsTerm reassembly_bin
- mag_cov_software
  
  public static final MixsTerm mag_cov_software
- vir_ident_software
  
  public static final MixsTerm vir_ident_software
- pred_genome_type
  
  public static final MixsTerm pred_genome_type
- pred_genome_struc
  
  public static final MixsTerm pred_genome_struc
- detec_type
  
  public static final MixsTerm detec_type
- otu_class_appr
  
  public static final MixsTerm otu_class_appr
- otu_seq_comp_appr
  
  public static final MixsTerm otu_seq_comp_appr
- otu_db
  
  public static final MixsTerm otu_db
- host_pred_appr
  
  public static final MixsTerm host_pred_appr
- host_pred_est_acc
  
  public static final MixsTerm host_pred_est_acc
- sop
  
  public static final MixsTerm sop
- associated_resource
  
  public static final MixsTerm associated_resource
- project_name
  
  public static final MixsTerm project_name
- samp_vol_we_dna_ext
  
  public static final MixsTerm samp_vol_we_dna_ext
- sieving
  
  public static final MixsTerm sieving
- pool_dna_extracts
  
  public static final MixsTerm pool_dna_extracts
- samp_name
  
  public static final MixsTerm samp_name
- samp_collect_method
  
  public static final MixsTerm samp_collect_method
Field Details
- alternatives
  
  public final String[] alternatives
Method Details
- values
  
  public static MixsTerm[] values()
  
  Returns an array containing the constants of this enum class, in the order they are declared.
  
  Returns:
  
  an array containing the constants of this enum class, in the order they are declared
- valueOf
  
  public static MixsTerm valueOf(String name)
  
  Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
  
  Parameters:
  
  name - the name of the enum constant to be returned.
  
  Returns:
  
  the enum constant with the specified name
  
  Throws:
  
  IllegalArgumentException - if this enum class has no constant with the specified name
  
  NullPointerException - if the argument is null
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Enum<MixsTerm>
- simpleName
  
  public String simpleName()
  
  Description copied from interface: Term
  
  The simple term name without any namespace or paths. For example scientificName.
  
  Specified by:
  
  simpleName in interface Term
- alternativeNames
  
  public String[] alternativeNames()
  
  Specified by:
  
  alternativeNames in interface AlternativeNames
  
  Returns:
  
  array of simple, alternative term names
- qualifiedName
  
  public String qualifiedName()
  
  Description copied from interface: Term
  
  The full qualified term uri including the namespace. For example http://rs.tdwg.org/dwc/terms/scientificName.
  
  Specified by:
  
  qualifiedName in interface Term
- isClass
  
  public boolean isClass()
  
  Description copied from interface: Term
  
  Informs if a term is generally used as a class term, i.e. defining rowTypes not properties. For example VernacularName, Taxon or Occurrence
  
  Specified by:
  
  isClass in interface Term
  
  Returns:
  
  true if the term is defining a class instead of a property, e.g. Taxon
- prefix
  
  public String prefix()
  
  Description copied from interface: Term
  
  A unique standard prefix representing the namespace. For example dwc.
  
  Specified by:
  
  prefix in interface Term
- namespace
  
  public URI namespace()
  
  Description copied from interface: Term
  
  The namespace the terms are in. Default implementations here expect the namespace to end with a slash.
  
  Specified by:
  
  namespace in interface Term

Enum Class MixsTerm

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum Constant Summary

Field Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Methods inherited from interface org.gbif.dwc.terms.Term

Enum Constant Details

samp_size

samp_collect_device

isol_growth_condt

contam_screen_input

wga_amp_kit

experimental_factor

env_broad_scale

env_local_scale

env_medium

rel_to_oxygen

samp_mat_process

size_frac

subspecf_gen_lin

ploidy

num_replicons

extrachrom_elements

estimated_size

ref_biomaterial

source_mat_id

pathogenicity

biotic_relationship

specific_host

host_spec_range

host_disease_stat

trophic_level

propagation

encoded_traits

source_uvig

virus_enrich_appr

nucl_acid_ext

nucl_acid_amp

lib_size

lib_reads_seqd

lib_layout

lib_vector

lib_screen

target_gene

target_subfragment

pcr_primers

mid

adapters

pcr_cond

seq_meth

seq_quality_check

chimera_check

tax_ident

sc_lysis_method

wga_amp_appr

assembly_qual

assembly_name

assembly_software

annot

number_contig

feat_pred

ref_db

sim_search_meth

tax_class

_16s_recover

_16s_recover_software

trnas

trna_ext_software

compl_score

compl_software

compl_appr

contam_score

contam_screen_param

decontam_software

sort_tech

sc_lysis_approach

bin_param