Index (Registry Webservices 2.49 API)

A B C D E F G H I K L M N O P Q R S T U V W X

A

ACCESS_POINT_URL_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
add(UUID) - Method in class org.gbif.registry.events.VarnishPurgeListener.UUIDHashSet
addComment(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.CommentableMapper
addComment(CommentMapper, CommentableMapper, UUID, Comment) - Static method in class org.gbif.registry.persistence.WithMyBatis
addComment(UUID, Comment, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action and then adds the server controlled fields for createdBy and modifiedBy.
addComment(UUID, Comment) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
addConstituent(UUID, UUID) - Method in class org.gbif.registry.ws.resources.NetworkResource
addContact(UUID, int, ContactType, boolean) - Method in interface org.gbif.registry.persistence.mapper.ContactableMapper
addContact(UUID, int, ContactType, boolean) - Method in interface org.gbif.registry.persistence.mapper.NodeMapper: This method is not supported by the NodeMapper.
addContact(ContactMapper, ContactableMapper, UUID, Contact) - Static method in class org.gbif.registry.persistence.WithMyBatis
addContact(UUID, Contact, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action and then adds the server controlled fields for createdBy and modifiedBy.
addContact(UUID, Contact) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
addContact(UUID, Contact) - Method in class org.gbif.registry.ws.resources.NodeResource
addDatasetConstituent(UUID, UUID) - Method in interface org.gbif.registry.persistence.mapper.NetworkMapper
addEndpoint(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.EndpointableMapper
addEndpoint(EndpointMapper, EndpointableMapper, UUID, Endpoint, MachineTagMapper) - Static method in class org.gbif.registry.persistence.WithMyBatis
addEndpoint(UUID, Endpoint, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action and then adds the server controlled fields for createdBy and modifiedBy.
addEndpoint(UUID, Endpoint) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
addIdentifier(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.IdentifiableMapper
addIdentifier(IdentifierMapper, IdentifiableMapper, UUID, Identifier) - Static method in class org.gbif.registry.persistence.WithMyBatis
addIdentifier(UUID, Identifier, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action and then adds the server controlled field for createdBy.
addIdentifier(UUID, Identifier) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
addMachineTag(int, int) - Method in interface org.gbif.registry.persistence.mapper.EndpointMapper
addMachineTag(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.MachineTaggableMapper
addMachineTag(MachineTagMapper, MachineTaggableMapper, UUID, MachineTag) - Static method in class org.gbif.registry.persistence.WithMyBatis
addMachineTag(UUID, MachineTag, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: Adding machineTags is not restricted to certain roles on the method level, but instead handled controlled field for createdBy.
addMachineTag(UUID, MachineTag) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
addMachineTag(UUID, String, String, String) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
addTag(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.TaggableMapper
addTag(TagMapper, TaggableMapper, UUID, Tag) - Static method in class org.gbif.registry.persistence.WithMyBatis
addTag(UUID, Tag, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action and then adds the server controlled fields for createdBy.
addTag(UUID, String) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
addTag(UUID, Tag) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
ADMIN_ROLE - Static variable in class org.gbif.registry.ws.security.UserRoles
ADMINISTRATIVE_CONTACT_TYPE - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
allowedToDeleteMachineTag(String, int) - Method in interface org.gbif.registry.persistence.mapper.UserRightsMapper
allowedToDeleteMachineTag(Principal, int) - Method in interface org.gbif.registry.ws.security.EditorAuthorizationService
allowedToDeleteMachineTag(Principal, int) - Method in class org.gbif.registry.ws.security.EditorAuthorizationServiceImpl
allowedToModifyDataset(Principal, UUID) - Method in interface org.gbif.registry.ws.security.EditorAuthorizationService
allowedToModifyDataset(Principal, UUID) - Method in class org.gbif.registry.ws.security.EditorAuthorizationServiceImpl
allowedToModifyEntity(Principal, UUID) - Method in interface org.gbif.registry.ws.security.EditorAuthorizationService: Checks whether a given registry entity is explicitly part of the list of entities for an editor user.
allowedToModifyEntity(Principal, UUID) - Method in class org.gbif.registry.ws.security.EditorAuthorizationServiceImpl
allowedToModifyInstallation(Principal, UUID) - Method in interface org.gbif.registry.ws.security.EditorAuthorizationService
allowedToModifyInstallation(Principal, UUID) - Method in class org.gbif.registry.ws.security.EditorAuthorizationServiceImpl
allowedToModifyNamespace(Principal, String) - Method in interface org.gbif.registry.ws.security.EditorAuthorizationService: Checks whether a given user is allowed to modify machine tags belonging to the given namespace.
allowedToModifyNamespace(Principal, String) - Method in class org.gbif.registry.ws.security.EditorAuthorizationServiceImpl
allowedToModifyOrganization(Principal, UUID) - Method in interface org.gbif.registry.ws.security.EditorAuthorizationService
allowedToModifyOrganization(Principal, UUID) - Method in class org.gbif.registry.ws.security.EditorAuthorizationServiceImpl
API_CACHE_PURGE_URL_PROPERTY - Static variable in class org.gbif.registry.events.VarnishPurgeModule
APP_CONF_FILE - Static variable in class org.gbif.registry.ws.guice.RegistryWsServletListener
areRelated(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.ContactableMapper: Checks if the contact is associated with the entity.
augment(Node) - Method in interface org.gbif.registry.directory.Augmenter: Adds all IMS infos found to an existing node instance which is required to have a country field filled.
augment(Node) - Method in class org.gbif.registry.directory.DirectoryAugmenterImpl
Augmenter - Interface in org.gbif.registry.directory
augmentWithMetadata(PagingResponse<Dataset>) - Method in class org.gbif.registry.ws.resources.DatasetResource: Augments a list of datasets with information from their preferred metadata document.
AuthResponseCodeOverwriteFilter - Class in org.gbif.registry.ws.filter: A filter that exists to overwrite 401 response codes with a 403 if the client instructs it to by using the header gbif-prefer-403-over-401= true.
AuthResponseCodeOverwriteFilter() - Constructor for class org.gbif.registry.ws.filter.AuthResponseCodeOverwriteFilter

B

BaseNetworkEntityMapper<T extends org.gbif.api.model.registry.NetworkEntity> - Interface in org.gbif.registry.persistence.mapper: The BaseNetworkEntityMapper defines a common interface for all our Network entities.
BaseNetworkEntityResource<T extends org.gbif.api.model.registry.NetworkEntity> - Class in org.gbif.registry.ws.resources: Provides a skeleton implementation of the following.
build() - Method in class org.gbif.registry.search.DatasetIndexBuilder
ByteArrayWrapper - Class in org.gbif.registry.persistence.mapper.handler: We want to retrieve byte arrays from postgres on their own, but there is no way to assign a specific type handler to a simple response.
ByteArrayWrapper() - Constructor for class org.gbif.registry.persistence.mapper.handler.ByteArrayWrapper

C

CACHE_CONTROL_DISABLED - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
ChangedComponentEvent - Class in org.gbif.registry.events: This event is fired after network entity components such as contacts, identifiers, endpoints or tags have been successfully updated, added or removed.
characters(char[], int, int) - Method in class org.gbif.registry.search.FullTextSaxHandler
CHECKLIST_SERVICE_TYPE_1 - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
CHECKLIST_SERVICE_TYPE_2 - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
checkUserIsInSecurityContext(String, SecurityContext) - Static method in class org.gbif.registry.ws.util.DownloadSecurityUtils: Checks if the user has the ADMIN_ROLE or is the same user in the current context.
clearSensitiveData(SecurityContext, Download) - Static method in class org.gbif.registry.ws.util.DownloadSecurityUtils: Remove data that shouldn't be publicly exposed.
clearSensitiveData(SecurityContext, Collection<DatasetOccurrenceDownloadUsage>) - Static method in class org.gbif.registry.ws.util.DownloadSecurityUtils: Remove data that shouldn't be publicly exposed.
CommentableMapper - Interface in org.gbif.registry.persistence.mapper
CommentMapper - Interface in org.gbif.registry.persistence.mapper
componentChange(ChangedComponentEvent) - Method in class org.gbif.registry.events.VarnishPurgeListener
configureService() - Method in class org.gbif.registry.search.guice.RegistrySearchModule
ContactableMapper - Interface in org.gbif.registry.persistence.mapper
ContactMapper - Interface in org.gbif.registry.persistence.mapper
convert(Dataset, Organization) - Static method in class org.gbif.registry.ws.util.DataCiteConverter: Convert a dataset and publisher object into a datacite metadata instance.
convert(Download, User, List<DatasetOccurrenceDownloadUsage>, TitleLookup) - Static method in class org.gbif.registry.ws.util.DataCiteConverter: Convert a download and its dataset usages into a datacite metadata instance.
count() - Method in interface org.gbif.registry.persistence.mapper.DatasetProcessStatusMapper
count() - Method in interface org.gbif.registry.persistence.mapper.MetasyncHistoryMapper
count() - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
count(String) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
count() - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
countAborted() - Method in interface org.gbif.registry.persistence.mapper.DatasetProcessStatusMapper
countByDataset(UUID) - Method in interface org.gbif.registry.persistence.mapper.DatasetOccurrenceDownloadMapper
countByDataset(UUID) - Method in interface org.gbif.registry.persistence.mapper.DatasetProcessStatusMapper
countByIdentifier(IdentifierType, String) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
countByInstallation(UUID) - Method in interface org.gbif.registry.persistence.mapper.MetasyncHistoryMapper
countByStatus(Set<Download.Status>) - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
countByUser(String, Set<Download.Status>) - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
countConstituents(UUID) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
countDatasetsByInstallation(UUID) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Count of datasets hosted by the given installation.
countDatasetsEndorsedBy(UUID) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Count of datasets published by an organization that is endorsed by the given node.
countDatasetsHostedBy(UUID) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
countDatasetsInNetwork(UUID) - Method in interface org.gbif.registry.persistence.mapper.NetworkMapper
countDatasetsPublishedBy(UUID) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
countDeleted() - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
countDeleted() - Method in interface org.gbif.registry.persistence.mapper.InstallationMapper
countDeleted() - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper
countDuplicates() - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
countInstallationsByOrganization(UUID) - Method in interface org.gbif.registry.persistence.mapper.InstallationMapper
countInstallationsEndorsedBy(UUID) - Method in interface org.gbif.registry.persistence.mapper.InstallationMapper
countNonPublishing() - Method in interface org.gbif.registry.persistence.mapper.InstallationMapper
countNonPublishing() - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper
countOrganizations() - Method in class org.gbif.registry.ws.resources.OrganizationResource: This is an HTTP only method to provide the count for the homepage of the portal.
countOrganizationsByCountry(Country) - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper
countOrganizationsEndorsedBy(UUID) - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper
countPendingEndorsements(UUID) - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper
countPublishing() - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper
countSubdatasets() - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
countWithFilter(Country, DatasetType) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Count all datasets having all non null filters given.
countWithNoEndpoint() - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
crawl(UUID) - Method in class org.gbif.registry.ws.resources.DatasetResource: This is a REST only (e.g.
create(DatasetOccurrenceDownloadUsage) - Method in interface org.gbif.registry.persistence.mapper.DatasetOccurrenceDownloadMapper
create(DatasetProcessStatus) - Method in interface org.gbif.registry.persistence.mapper.DatasetProcessStatusMapper
create(DOI, DoiType) - Method in interface org.gbif.registry.persistence.mapper.DoiMapper
create(Metadata, byte[]) - Method in interface org.gbif.registry.persistence.mapper.MetadataMapper: Stores a new metadata document with its source document as a byte array exactly as it was.
create(MetasyncHistory) - Method in interface org.gbif.registry.persistence.mapper.MetasyncHistoryMapper
create(T) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
create(Download) - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
create(NetworkEntityMapper<T>, T) - Static method in class org.gbif.registry.persistence.WithMyBatis
create(T, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action and then adds the server controlled fields for createdBy and modifiedBy.
create(T) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
create(DatasetOccurrenceDownloadUsage) - Method in class org.gbif.registry.ws.resources.DatasetOccurrenceDownloadUsageResource
create(Dataset) - Method in class org.gbif.registry.ws.resources.DatasetResource: Deal with DOI business rules http://dev.gbif.org/issues/browse/POR-2554
create(Download) - Method in class org.gbif.registry.ws.resources.OccurrenceDownloadResource
create(Organization, SecurityContext) - Method in class org.gbif.registry.ws.resources.OrganizationResource: This method overrides the create method for an organization, populating the password field with a randomly generated string before passing on to the superclass create method.
createComment(Comment) - Method in interface org.gbif.registry.persistence.mapper.CommentMapper
createContact(Contact) - Method in interface org.gbif.registry.persistence.mapper.ContactMapper
created(CreateEvent<T>) - Method in class org.gbif.registry.events.VarnishPurgeListener
created(CreateEvent<T>) - Method in class org.gbif.registry.search.DatasetIndexUpdateListener
createDatasetProcessStatus(UUID, DatasetProcessStatus) - Method in class org.gbif.registry.ws.resources.DatasetResource
createDatasetProcessStatus(DatasetProcessStatus) - Method in class org.gbif.registry.ws.resources.DatasetResource
createDatasetProcessStatus(UUID, int, DatasetProcessStatus) - Method in class org.gbif.registry.ws.resources.DatasetResource
createEndpoint(Endpoint) - Method in interface org.gbif.registry.persistence.mapper.EndpointMapper
CreateEvent<T extends org.gbif.api.model.registry.NetworkEntity> - Class in org.gbif.registry.events: This event is fired after a new network entity has been successfully created.
createIdentifier(Identifier) - Method in interface org.gbif.registry.persistence.mapper.IdentifierMapper
createMachineTag(MachineTag) - Method in interface org.gbif.registry.persistence.mapper.MachineTagMapper
createMetasync(UUID, MetasyncHistory) - Method in class org.gbif.registry.ws.resources.InstallationResource
createMetasync(MetasyncHistory) - Method in class org.gbif.registry.ws.resources.InstallationResource
createTag(Tag) - Method in interface org.gbif.registry.persistence.mapper.TagMapper

D

DataCiteConverter - Class in org.gbif.registry.ws.util
DataCiteConverter() - Constructor for class org.gbif.registry.ws.util.DataCiteConverter
DatasetIndexBuilder - Class in org.gbif.registry.search: A builder that will clear and build a new dataset index by paging over the given service.
DatasetIndexBuilder(SolrClient, DatasetService, InstallationService, OrganizationService) - Constructor for class org.gbif.registry.search.DatasetIndexBuilder
DatasetIndexUpdateListener - Class in org.gbif.registry.search: The index updater will asynchronously keep the provided SOLR index up to date with dataset changes and those cascaded from (e.g.) organization changes.
DatasetIndexUpdateListener(DatasetIndexBuilder, boolean, SolrClient, OrganizationService, InstallationService, DatasetService, EventBus) - Constructor for class org.gbif.registry.search.DatasetIndexUpdateListener
DatasetMapper - Interface in org.gbif.registry.persistence.mapper
DatasetOccurrenceDownloadMapper - Interface in org.gbif.registry.persistence.mapper: Mapper that perform operations on dataset usages in occurrence downloads.
DatasetOccurrenceDownloadUsageResource - Class in org.gbif.registry.ws.resources: Occurrence download resource/web service.
DatasetOccurrenceDownloadUsageResource(DatasetOccurrenceDownloadMapper) - Constructor for class org.gbif.registry.ws.resources.DatasetOccurrenceDownloadUsageResource
DatasetProcessStatusMapper - Interface in org.gbif.registry.persistence.mapper: Mapper that perform operations on DatasetProcessStatus instances.
DatasetResource - Class in org.gbif.registry.ws.resources: A MyBATIS implementation of the service.
DatasetResource(DatasetMapper, ContactMapper, EndpointMapper, MachineTagMapper, TagMapper, IdentifierMapper, CommentMapper, EventBus, DatasetSearchService, MetadataMapper, DatasetProcessStatusMapper, NetworkMapper, EditorAuthorizationService, OrganizationMapper, DoiGenerator) - Constructor for class org.gbif.registry.ws.resources.DatasetResource
DatasetSearchRequestProvider - Class in org.gbif.registry.ws.provider
DatasetSearchRequestProvider() - Constructor for class org.gbif.registry.ws.provider.DatasetSearchRequestProvider
DatasetSearchServiceSolr - Class in org.gbif.registry.search: Dataset search implementation using the provided SOLR instance.
DatasetSearchServiceSolr(SolrClient) - Constructor for class org.gbif.registry.search.DatasetSearchServiceSolr
datasetsForOrganization(UUID) - Method in class org.gbif.registry.ws.resources.legacy.LegacyDatasetResource: Retrieve all Datasets owned by an organization, handling incoming request with path /resource.
datasetSolr(String) - Method in class org.gbif.registry.search.guice.RegistrySearchModule: A provider of the SolrServer to use with a dataset search.
DatasetSuggestRequestProvider - Class in org.gbif.registry.ws.provider
DatasetSuggestRequestProvider() - Constructor for class org.gbif.registry.ws.provider.DatasetSuggestRequestProvider
DATASOURCE_BINDING_NAME - Static variable in class org.gbif.registry.persistence.guice.RegistryMyBatisModule.InternalRegistryServiceMyBatisModule
delete(DOI) - Method in interface org.gbif.registry.doi.DoiGenerator: Deletes a GBIF DOI.
delete(DOI) - Method in class org.gbif.registry.doi.DoiGeneratorMQ
delete(DOI) - Method in interface org.gbif.registry.persistence.mapper.DoiMapper
delete(int) - Method in interface org.gbif.registry.persistence.mapper.MetadataMapper
delete(UUID) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
delete(NetworkEntityMapper<T>, UUID) - Static method in class org.gbif.registry.persistence.WithMyBatis
delete(UUID) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action, and then deletes the entity.
deleteAllDatasetEndpoints(UUID) - Method in class org.gbif.registry.ws.resources.legacy.LegacyEndpointResource: Delete all Endpoints for a Dataset, handling incoming request with path /resource/service and query parameter resourceKey.
deleteComment(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.CommentableMapper
deleteComment(CommentableMapper, UUID, int) - Static method in class org.gbif.registry.persistence.WithMyBatis
deleteComment(UUID, int) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action, and then deletes the Comment.
deleteContact(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.ContactableMapper
deleteContact(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.NodeMapper: This method is not supported by the NodeMapper.
deleteContact(ContactableMapper, UUID, int) - Static method in class org.gbif.registry.persistence.WithMyBatis
deleteContact(UUID, int) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action.
deleteContact(UUID, int) - Method in class org.gbif.registry.ws.resources.NodeResource
deleteContacts(UUID) - Method in interface org.gbif.registry.persistence.mapper.ContactableMapper: Delete all contacts associated with the given entity
deleted(DeleteEvent<T>) - Method in class org.gbif.registry.events.VarnishPurgeListener
deleted(Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
deleted(Pageable) - Method in interface org.gbif.registry.persistence.mapper.InstallationMapper
deleted(Pageable) - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper
deleted(DeleteEvent<T>) - Method in class org.gbif.registry.search.DatasetIndexUpdateListener
deleteDataset(UUID) - Method in class org.gbif.registry.ws.resources.legacy.IptResource: Delete IPT Dataset, handling incoming request with path /ipt/resource/{key}.
deleteDataset(UUID) - Method in class org.gbif.registry.ws.resources.legacy.LegacyDatasetResource: Delete GBRDS Dataset, handling incoming request with path /resource/{key}.
deleteDatasetConstituent(UUID, UUID) - Method in interface org.gbif.registry.persistence.mapper.NetworkMapper
deleteEndpoint(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.EndpointableMapper
deleteEndpoint(EndpointableMapper, UUID, int) - Static method in class org.gbif.registry.persistence.WithMyBatis
deleteEndpoint(UUID, int) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action, and then deletes the Endpoint.
DeleteEvent<T extends org.gbif.api.model.registry.NetworkEntity> - Class in org.gbif.registry.events: This event is fired after a new network entity has been successfully deleted.
deleteIdentifier(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.IdentifiableMapper
deleteIdentifier(IdentifiableMapper, UUID, int) - Static method in class org.gbif.registry.persistence.WithMyBatis
deleteIdentifier(UUID, int) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action, and then deletes the Identifier.
deleteMachineTag(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.MachineTaggableMapper
deleteMachineTag(MachineTaggableMapper, UUID, int) - Static method in class org.gbif.registry.persistence.WithMyBatis
deleteMachineTag(UUID, int, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: The webservice method to delete a machine tag.
deleteMachineTag(UUID, int) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: Deletes the MachineTag according to interface without security restrictions.
deleteMachineTags(UUID, String) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
deleteMachineTags(UUID, String, String) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
deleteMetadata(int) - Method in class org.gbif.registry.ws.resources.DatasetResource
deleteTag(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.TaggableMapper
deleteTag(TaggableMapper, UUID, int) - Static method in class org.gbif.registry.persistence.WithMyBatis
deleteTag(UUID, int) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action, and then deletes the Tag.
DESCRIPTION_LANGUAGE_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
DESCRIPTION_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
destroy() - Method in class org.gbif.registry.ws.filter.StaticContentFilter
DirectoryAugmenterImpl - Class in org.gbif.registry.directory
DirectoryAugmenterImpl(ParticipantService, NodeService, PersonService) - Constructor for class org.gbif.registry.directory.DirectoryAugmenterImpl
DirectoryModule - Class in org.gbif.registry.directory: Sets up the module to access the GBIF directory API.
DirectoryModule(Properties) - Constructor for class org.gbif.registry.directory.DirectoryModule
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.gbif.registry.ws.filter.StaticContentFilter
DOI_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
DoiGenerator - Interface in org.gbif.registry.doi: Registry internal service that guarantees to issue unique new DOIs and deals with scheduling DOI metadata updates and registration via RabbitMQ.
DoiGeneratorMQ - Class in org.gbif.registry.doi
DoiGeneratorMQ(DoiMapper, URI, String) - Constructor for class org.gbif.registry.doi.DoiGeneratorMQ
DoiMapper - Interface in org.gbif.registry.persistence.mapper: MyBatis mapper to store DOIs and their status in the registry db.
DoiModule - Class in org.gbif.registry.doi: Exposes a DoiGenerator service requiring an existing MessagePublisher and DoiMapper being bound.
DoiModule(Properties) - Constructor for class org.gbif.registry.doi.DoiModule
DoiType - Enum in org.gbif.registry.doi
DOITypeHandler - Class in org.gbif.registry.persistence.mapper.handler: A converter for DOI objects to the database representation using the DOI name.
DOITypeHandler() - Constructor for class org.gbif.registry.persistence.mapper.handler.DOITypeHandler
DownloadSecurityUtils - Class in org.gbif.registry.ws.util: Class that exposes common functions used by services that expose data about occurrence downloads.
duplicates(Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper

E

EARLIEST_DATE - Static variable in class org.gbif.registry.oaipmh.guice.OaipmhModule
EDITOR_ROLE - Static variable in class org.gbif.registry.ws.security.UserRoles
EditorAuthorizationFilter - Class in org.gbif.registry.ws.security: For requests authenticated with a REGISTRY_EDITOR role two levels of authorization need to be passed.
EditorAuthorizationFilter(EditorAuthorizationService) - Constructor for class org.gbif.registry.ws.security.EditorAuthorizationFilter
EditorAuthorizationService - Interface in org.gbif.registry.ws.security
EditorAuthorizationServiceImpl - Class in org.gbif.registry.ws.security
EditorAuthorizationServiceImpl(DatasetService, InstallationService, OrganizationService, UserRightsMapper) - Constructor for class org.gbif.registry.ws.security.EditorAuthorizationServiceImpl
EMBARGO_SECONDS_PROPERTY - Static variable in class org.gbif.registry.events.EventModule
EmbargoDuration - Annotation Type in org.gbif.registry.events: An annotation to indicate a parameter provides an embargo duration.
endorsedDatasets(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.NodeResource
endorsedOrganizations(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.NodeResource
EndpointableMapper - Interface in org.gbif.registry.persistence.mapper
EndpointMapper - Interface in org.gbif.registry.persistence.mapper
endpointsForDataset(UUID, String) - Method in class org.gbif.registry.ws.resources.legacy.LegacyEndpointResource: Retrieve all Endpoints associated to a Dataset, handling incoming request with path /service and query parameter resourceKey.
EnumerationResource - Class in org.gbif.registry.ws.resources: A resource that provides a JSON serialization of all Enumerations in the GBIF API suitable for building Javascript based clients.
EnumerationResource() - Constructor for class org.gbif.registry.ws.resources.EnumerationResource
ErrorResponse - Class in org.gbif.registry.ws.model: Class used to generate error response for legacy (GBRDS/IPT) API.
ErrorResponse(String) - Constructor for class org.gbif.registry.ws.model.ErrorResponse
ErrorResponse() - Constructor for class org.gbif.registry.ws.model.ErrorResponse: No-arg default constructor.
EventModule - Class in org.gbif.registry.events: One can either extend and bind listeners in this class, or bind them in other modules.
EventModule(Properties) - Constructor for class org.gbif.registry.events.EventModule
exists(String) - Method in class org.gbif.registry.oaipmh.OaipmhSetRepository
extractDecades(List<TemporalCoverage>) - Method in class org.gbif.registry.search.util.TimeSeriesExtractor: Produces a list of 4 digit decades or centuries with no duplicates, following normal ordering.
extractOrgKeyFromSecurity(SecurityContext) - Static method in class org.gbif.registry.ws.security.LegacyAuthorizationFilter

F

failed(DOI, InvalidMetadataException) - Method in interface org.gbif.registry.doi.DoiGenerator: Updates the doi table to status FAILED and uses the error message & stacktrace as the xml for manual debugging / cleanup.
failed(DOI, InvalidMetadataException) - Method in class org.gbif.registry.doi.DoiGeneratorMQ
filter(ContainerRequest, ContainerResponse) - Method in class org.gbif.registry.ws.filter.AuthResponseCodeOverwriteFilter
filter(ContainerRequest) - Method in class org.gbif.registry.ws.security.EditorAuthorizationFilter
filter(ContainerRequest) - Method in class org.gbif.registry.ws.security.LegacyAuthorizationFilter
FullTextSaxHandler - Class in org.gbif.registry.search: A simple metadata sax base handler that collects all character data inside elements into a string buffer, resetting the buffer with every element start and storing the string version of the buffer in this.content when the end of the element is reached.
FullTextSaxHandler() - Constructor for class org.gbif.registry.search.FullTextSaxHandler

G

get(UUID, int) - Method in interface org.gbif.registry.persistence.mapper.DatasetProcessStatusMapper
get(DOI) - Method in interface org.gbif.registry.persistence.mapper.DoiMapper
get(int) - Method in interface org.gbif.registry.persistence.mapper.MetadataMapper: This gets the instance in question.
get(UUID) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper: This gets the instance in question.
get(String) - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
get(NetworkEntityMapper<T>, UUID) - Static method in class org.gbif.registry.persistence.WithMyBatis
get(UUID) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
get(UUID) - Method in class org.gbif.registry.ws.resources.DatasetResource
get(UUID) - Method in class org.gbif.registry.ws.resources.NodeResource
get(String) - Method in class org.gbif.registry.ws.resources.OccurrenceDownloadResource
getAbout() - Method in class org.gbif.registry.oaipmh.OaipmhItem
getAccessPointURL() - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
getArchiveEndpoint() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the endpoint of type ARCHIVE.
getAuthenticationScheme() - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization
getByCountry(Country) - Method in interface org.gbif.registry.persistence.mapper.NodeMapper
getByCountry(String) - Method in class org.gbif.registry.ws.resources.NodeResource
getByCountry(Country) - Method in class org.gbif.registry.ws.resources.NodeResource
getByDOI(DOI) - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
getCitation() - Method in class org.gbif.registry.ws.model.LegacyDataset: Excludes element from XML document created via JAXB.
getComponentClass() - Method in class org.gbif.registry.events.ChangedComponentEvent
getData() - Method in class org.gbif.registry.persistence.mapper.handler.ByteArrayWrapper
getDatasetDescription() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the dataset description.
getDatasetDescriptionLanguage() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the language of the dataset description.
getDatasetDoi() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the dataset Doi.
getDatasetHomepageUrl() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get homepage URL.
getDatasetKey() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the dataset key.
getDatasetKey() - Method in class org.gbif.registry.ws.model.LegacyEndpoint: Get the endpoint's dataset key.
getDatasetLogoUrl() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get logo URL.
getDatasetName() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the title of the dataset.
getDatasetNameLanguage() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the language of the dataset name.
getDatasetProcessStatus(UUID, int) - Method in class org.gbif.registry.ws.resources.DatasetResource
getDatestamp() - Method in class org.gbif.registry.oaipmh.OaipmhItem
getDescription() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getDescription() - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
getDescription() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getDescriptionLanguage() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getDescriptionLanguage() - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
getDescriptionLanguage() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getDocument(int) - Method in interface org.gbif.registry.persistence.mapper.MetadataMapper: Return the content of a metadata entry.
getEmlEndpoint() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the endpoint of type EML.
getEndpointDescription() - Method in class org.gbif.registry.ws.model.LegacyEndpoint: Get the endpoint description.
getEndpointType() - Method in class org.gbif.registry.ws.model.LegacyEndpoint: Get endpoint type.
getEndpointType() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Get the endpoint type.
getEndpointUrl() - Method in class org.gbif.registry.ws.model.LegacyEndpoint: Get the endpoint URL.
getEndpointUrl() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Get the endpoint URL.
getEnumeration(String) - Method in class org.gbif.registry.ws.resources.EnumerationResource: Gets the values of the named enumeration should the enumeration exist.
getError() - Method in class org.gbif.registry.ws.model.ErrorResponse
getFeedEndpoint() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Get the endpoint of type FEED.
getFullText() - Method in class org.gbif.registry.search.FullTextSaxHandler
getHomepageURL() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getHomepageURL() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getHostedDatasets(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.InstallationResource
getHostingOrganizationKey() - Method in class org.gbif.registry.ws.model.LegacyInstallation
getIdentifier() - Method in class org.gbif.registry.oaipmh.OaipmhItem
getIptDescription() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Get the description of the installation.
getIptInstallationKey() - Method in class org.gbif.registry.ws.model.LegacyInstallation
getIptKey() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the key of the IPT installation.
getIptName() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Get the title of the installation.
getItem(String) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository
getItemIdentifiers(List<ScopedFilter>, int, int) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository
getItemIdentifiers(List<ScopedFilter>, int, int, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository
getItemIdentifiers(List<ScopedFilter>, int, int, Date, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository
getItemIdentifiers(List<ScopedFilter>, int, int, String) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository
getItemIdentifiers(List<ScopedFilter>, int, int, String, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository
getItemIdentifiers(List<ScopedFilter>, int, int, String, Date, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository: Get items identifier as ListItemIdentifiersResult matching the provided filters.
getItemIdentifiersUntil(List<ScopedFilter>, int, int, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository
getItemIdentifiersUntil(List<ScopedFilter>, int, int, String, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository
getItems(List<ScopedFilter>, int, int) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository: See getItems
getItems(List<ScopedFilter>, int, int, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository: See getItems
getItems(List<ScopedFilter>, int, int, Date, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository: See getItems
getItems(List<ScopedFilter>, int, int, String) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository: See getItems
getItems(List<ScopedFilter>, int, int, String, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository: See getItems
getItems(List<ScopedFilter>, int, int, String, Date, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository: Get items as ListItemsResults matching the provided filters.
getItemsUntil(List<ScopedFilter>, int, int, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository: See getItems
getItemsUntil(List<ScopedFilter>, int, int, String, Date) - Method in class org.gbif.registry.oaipmh.OaipmhItemRepository: See getItems
getKey() - Method in class org.gbif.registry.ws.model.IptEntityResponse
getKey() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getKey() - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
getKey() - Method in class org.gbif.registry.ws.model.LegacyOrganizationBriefResponse
getKey() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getMetadata() - Method in class org.gbif.registry.oaipmh.OaipmhItem
getMetadata(int) - Method in class org.gbif.registry.ws.resources.DatasetResource
getMetadataDocument(UUID) - Method in class org.gbif.registry.ws.resources.DatasetResource
getMetadataDocument(int) - Method in class org.gbif.registry.ws.resources.DatasetResource
getName() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getName() - Method in class org.gbif.registry.ws.model.LegacyOrganizationBriefResponse
getName() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getNameLanguage() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getNameLanguage() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getNewObject() - Method in class org.gbif.registry.events.CreateEvent
getNewObject() - Method in class org.gbif.registry.events.UpdateEvent
getNodeContactEmail() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getNodeKey() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getNodeName() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getObjectClass() - Method in class org.gbif.registry.events.CreateEvent
getObjectClass() - Method in class org.gbif.registry.events.DeleteEvent
getObjectClass() - Method in class org.gbif.registry.events.UpdateEvent
getOldObject() - Method in class org.gbif.registry.events.DeleteEvent
getOldObject() - Method in class org.gbif.registry.events.UpdateEvent
getOrganisationKey() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getOrganisationKey() - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
getOrganization(UUID, String, String, SecurityContext) - Method in class org.gbif.registry.ws.resources.legacy.LegacyOrganizationResource: This sub-resource can be called for various reasons:
1.
getOrganizationKey() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the publishing organization key.
getOrganizationKeyFromParams() - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization: Retrieves the organizationKey from the requests' form parameters.
getOrganizations() - Method in class org.gbif.registry.ws.resources.legacy.LegacyOrganizationResource: Get a list of all Organizations, handling incoming request with path /registry/organisation.json.
getPrimaryContact() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the primary contact.
getPrimaryContact() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Get the primary contact.
getPrimaryContact(Contactable) - Static method in class org.gbif.registry.ws.util.LegacyResourceUtils: Iterate through list of contacts, return first primary contact encountered, or null if none found.
getPrimaryContactAddress() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get primary contact address.
getPrimaryContactAddress() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getPrimaryContactAddress() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getPrimaryContactDescription() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get primary contact description.
getPrimaryContactDescription() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getPrimaryContactDescription() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getPrimaryContactEmail() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get primary contact email.
getPrimaryContactEmail() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getPrimaryContactEmail() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Get primary contact email.
getPrimaryContactEmail() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getPrimaryContactName() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get primary contact name.
getPrimaryContactName() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getPrimaryContactName() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Get primary contact name.
getPrimaryContactName() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getPrimaryContactPhone() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get primary contact phone.
getPrimaryContactPhone() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getPrimaryContactPhone() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getPrimaryContactType() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get primary contact type.
getPrimaryContactType() - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
getPrimaryContactType() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Get primary contact type.
getPrimaryContactType() - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
getResourceKey() - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
getResult(ResultSet, int) - Method in class org.gbif.registry.persistence.mapper.handler.DOITypeHandler
getResult(ResultSet, String) - Method in class org.gbif.registry.persistence.mapper.handler.DOITypeHandler
getResult(CallableStatement, int) - Method in class org.gbif.registry.persistence.mapper.handler.DOITypeHandler
getResult(ResultSet, String) - Method in class org.gbif.registry.persistence.mapper.handler.OccurrenceDownloadStatusTypeHandler
getResult(ResultSet, int) - Method in class org.gbif.registry.persistence.mapper.handler.OccurrenceDownloadStatusTypeHandler
getResult(CallableStatement, int) - Method in class org.gbif.registry.persistence.mapper.handler.OccurrenceDownloadStatusTypeHandler
getResult(CallableStatement, int) - Method in class org.gbif.registry.persistence.mapper.handler.PredicateTypeHandler
getResult(ResultSet, int) - Method in class org.gbif.registry.persistence.mapper.handler.PredicateTypeHandler
getResult(ResultSet, String) - Method in class org.gbif.registry.persistence.mapper.handler.PredicateTypeHandler
getServiceTypes() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the serviceTypes.
getServiceUrls() - Method in class org.gbif.registry.ws.model.LegacyDataset: Get the serviceUrls.
getSets() - Method in class org.gbif.registry.oaipmh.OaipmhItem
getTargetClass() - Method in class org.gbif.registry.events.ChangedComponentEvent
getTargetEntityKey() - Method in class org.gbif.registry.events.ChangedComponentEvent
getTitles(Collection<UUID>) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
getType() - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
getTypeDescription() - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
getUserKey() - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization
getUserPrincipal() - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization
getWsPassword() - Method in class org.gbif.registry.ws.model.LegacyInstallation

H

HOMEPAGE_URL_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
hostedDatasets(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.OrganizationResource
hostingInstallationsOf(InstallationType, Boolean) - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper

I

IdentifiableMapper - Interface in org.gbif.registry.persistence.mapper
IdentifierMapper - Interface in org.gbif.registry.persistence.mapper
init(FilterConfig) - Method in class org.gbif.registry.ws.filter.StaticContentFilter
insertMetadata(UUID, HttpServletRequest, SecurityContext) - Method in class org.gbif.registry.ws.resources.DatasetResource
insertMetadata(UUID, InputStream) - Method in class org.gbif.registry.ws.resources.DatasetResource: We need to implement this interface method here, but there is no way to retrieve the actual user as we cannot access any http request.
InstallationMapper - Interface in org.gbif.registry.persistence.mapper
InstallationResource - Class in org.gbif.registry.ws.resources: A MyBATIS implementation of the service.
InstallationResource(InstallationMapper, ContactMapper, EndpointMapper, IdentifierMapper, MachineTagMapper, TagMapper, CommentMapper, DatasetMapper, OrganizationMapper, MetasyncHistoryMapper, EventBus, EditorAuthorizationService) - Constructor for class org.gbif.registry.ws.resources.InstallationResource
installations(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.NodeResource
installations(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.OrganizationResource
InternalRegistryServiceMyBatisModule(Properties) - Constructor for class org.gbif.registry.persistence.guice.RegistryMyBatisModule.InternalRegistryServiceMyBatisModule
inventory() - Method in class org.gbif.registry.ws.resources.EnumerationResource: An inventory of the enumerations supported.
invoke(MethodInvocation) - Method in class org.gbif.registry.ws.guice.StringTrimInterceptor
IPT_KEY_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
IptEntityResponse - Class in org.gbif.registry.ws.model: Class used to generate responses for legacy IPT web service API.
IptEntityResponse() - Constructor for class org.gbif.registry.ws.model.IptEntityResponse: No argument, default constructor needed by JAXB.
IptEntityResponse(String) - Constructor for class org.gbif.registry.ws.model.IptEntityResponse
IptResource - Class in org.gbif.registry.ws.resources.legacy: Handle all legacy web service requests coming from IPT installations, previously handled by the GBRDS.
IptResource(InstallationService, OrganizationService, DatasetService) - Constructor for class org.gbif.registry.ws.resources.legacy.IptResource
isAuthorizedToModifyInstallation(UUID) - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization: Determine if HTTP request is authorized to modify Installation.
isAuthorizedToModifyOrganization() - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization: Determine if HTTP request is authorized to modify Organization.
isAuthorizedToModifyOrganization(UUID) - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization
isAuthorizedToModifyOrganizationsDataset(UUID) - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization: Determine if HTTP request is authorized to modify a Dataset belonging to an Organization.
isDeleted() - Method in class org.gbif.registry.oaipmh.OaipmhItem
isGbif(DOI) - Method in interface org.gbif.registry.doi.DoiGenerator: Tests a DOI to see if it was issued by GBIF.
isGbif(DOI) - Method in class org.gbif.registry.doi.DoiGeneratorMQ
isSecure() - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization
isUserAuthorizedInContext(SecurityContext, String) - Static method in class org.gbif.registry.ws.util.DownloadSecurityUtils: Checks if the user has the ADMIN_ROLE or is the same user in the current context.
isUserInRole(String) - Method in class org.gbif.registry.ws.security.LegacyRequestAuthorization
isValid(LegacyInstallation, OrganizationService) - Static method in class org.gbif.registry.ws.util.LegacyResourceUtils: Check installation is valid before persisting.
isValid(LegacyDataset, OrganizationService, InstallationService) - Static method in class org.gbif.registry.ws.util.LegacyResourceUtils: Check dataset is valid before persisting.
isValid(LegacyEndpoint, DatasetService) - Static method in class org.gbif.registry.ws.util.LegacyResourceUtils: Check endpoint is valid before persisting.
isValidOnUpdate(LegacyInstallation, InstallationService, OrganizationService) - Static method in class org.gbif.registry.ws.util.LegacyResourceUtils: Check installation is valid before updating.
isValidOnUpdate(LegacyDataset, DatasetService, OrganizationService, InstallationService) - Static method in class org.gbif.registry.ws.util.LegacyResourceUtils: Check dataset is valid before updating.

K

KEY_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
keyExistsForUser(String, UUID) - Method in interface org.gbif.registry.persistence.mapper.UserRightsMapper

L

LegacyAuthorizationFilter - Class in org.gbif.registry.ws.security: A filter that will intercept legacy web service requests to /registry/* and perform authentication setting a security context on the request.
LegacyAuthorizationFilter(InstallationService, OrganizationService, DatasetService) - Constructor for class org.gbif.registry.ws.security.LegacyAuthorizationFilter
LegacyDataset - Class in org.gbif.registry.ws.model: Class used to create or update a Dataset for legacy (GBRDS/IPT) API.
LegacyDataset() - Constructor for class org.gbif.registry.ws.model.LegacyDataset: Default constructor.
LegacyDatasetResource - Class in org.gbif.registry.ws.resources.legacy: Handle all legacy web service Dataset requests (excluding IPT requests), previously handled by the GBRDS.
LegacyDatasetResource(OrganizationService, DatasetService, IptResource, InstallationService) - Constructor for class org.gbif.registry.ws.resources.legacy.LegacyDatasetResource
LegacyDatasetResponse - Class in org.gbif.registry.ws.model: Class used to generate responses for legacy (GBRDS/IPT) API.
LegacyDatasetResponse(Dataset, Contact) - Constructor for class org.gbif.registry.ws.model.LegacyDatasetResponse
LegacyDatasetResponse() - Constructor for class org.gbif.registry.ws.model.LegacyDatasetResponse: No argument, default constructor needed by JAXB.
LegacyEndpoint - Class in org.gbif.registry.ws.model: Class used to create or update an Endpoint for legacy (GBRDS/IPT) API.
LegacyEndpoint() - Constructor for class org.gbif.registry.ws.model.LegacyEndpoint
LegacyEndpointResource - Class in org.gbif.registry.ws.resources.legacy: Handle all legacy web service Endpoint requests (excluding IPT requests), previously handled by the GBRDS.
LegacyEndpointResource(DatasetService) - Constructor for class org.gbif.registry.ws.resources.legacy.LegacyEndpointResource
LegacyEndpointResponse - Class in org.gbif.registry.ws.model: Class used to generate responses for legacy (GBRDS/IPT) API.
LegacyEndpointResponse(Endpoint, UUID) - Constructor for class org.gbif.registry.ws.model.LegacyEndpointResponse
LegacyEndpointResponse() - Constructor for class org.gbif.registry.ws.model.LegacyEndpointResponse: No argument, default constructor needed by JAXB.
LegacyInstallation - Class in org.gbif.registry.ws.model: Class used to create or update an Installation for legacy (GBRDS/IPT) API.
LegacyInstallation() - Constructor for class org.gbif.registry.ws.model.LegacyInstallation: Default constructor.
LegacyOrganizationBriefResponse - Class in org.gbif.registry.ws.model: Class used to generate response for legacy (GBRDS/IPT) API.
LegacyOrganizationBriefResponse(Organization) - Constructor for class org.gbif.registry.ws.model.LegacyOrganizationBriefResponse
LegacyOrganizationBriefResponse() - Constructor for class org.gbif.registry.ws.model.LegacyOrganizationBriefResponse: No argument, default constructor needed by JAXB.
LegacyOrganizationResource - Class in org.gbif.registry.ws.resources.legacy: Handle all legacy web service Organization requests, previously handled by the GBRDS.
LegacyOrganizationResource(OrganizationService, NodeService, OrganizationMapper, boolean, String, int, String, String, String) - Constructor for class org.gbif.registry.ws.resources.legacy.LegacyOrganizationResource
LegacyOrganizationResponse - Class in org.gbif.registry.ws.model: Class used to generate response for legacy (GBRDS/IPT) API.
LegacyOrganizationResponse(Organization, Contact, Node) - Constructor for class org.gbif.registry.ws.model.LegacyOrganizationResponse
LegacyOrganizationResponse() - Constructor for class org.gbif.registry.ws.model.LegacyOrganizationResponse: No argument, default constructor needed by JAXB.
LegacyRequestAuthorization - Class in org.gbif.registry.ws.security: Class providing temporary authorization for legacy web service requests (GBRDS/IPT).
LegacyRequestAuthorization(HttpContext, OrganizationService, DatasetService, InstallationService) - Constructor for class org.gbif.registry.ws.security.LegacyRequestAuthorization
LegacyResourceConstants - Class in org.gbif.registry.ws.util: Class containing constant values used across legacy resources, in answering legacy web service requests (GBRDS/IPT).
LegacyResourceUtils - Class in org.gbif.registry.ws.util: Class containing utility methods used across legacy resources, in answering legacy web service requests (GBRDS/IPT).
LegacyResourceUtils() - Constructor for class org.gbif.registry.ws.util.LegacyResourceUtils
list(Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetProcessStatusMapper
list(UUID, MetadataType) - Method in interface org.gbif.registry.persistence.mapper.MetadataMapper: Return all metadata entries for a given dataset key ordered by priority and creation date, i.e.
list(Pageable) - Method in interface org.gbif.registry.persistence.mapper.MetasyncHistoryMapper
list(Pageable) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
list(Pageable) - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
list(NetworkEntityMapper<T>, Pageable) - Static method in class org.gbif.registry.persistence.WithMyBatis
list(Pageable) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
list(Country, DatasetType, IdentifierType, String, String, Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource: All network entities support simple (!) search with "&q=".
list(Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
list(String, IdentifierType, String, Pageable) - Method in class org.gbif.registry.ws.resources.InstallationResource: All network entities support simple (!) search with "&q=".
list(String, IdentifierType, String, Pageable) - Method in class org.gbif.registry.ws.resources.NetworkResource: All network entities support simple (!) search with "&q=".
list(String, IdentifierType, String, Pageable) - Method in class org.gbif.registry.ws.resources.NodeResource: All network entities support simple (!) search with "&q=".
list(Pageable) - Method in class org.gbif.registry.ws.resources.NodeResource
list(Pageable, Set<Download.Status>) - Method in class org.gbif.registry.ws.resources.OccurrenceDownloadResource: Lists all the downloads.
list(Country, IdentifierType, String, String, Pageable) - Method in class org.gbif.registry.ws.resources.OrganizationResource: All network entities support simple (!) search with "&q=".
listAborted(Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetProcessStatusMapper
listAbortedDatasetProcesses(Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listActiveCountries() - Method in interface org.gbif.registry.persistence.mapper.NodeMapper
listActiveCountries() - Method in class org.gbif.registry.ws.resources.NodeResource
listByCountry(Country, DatasetType, Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listByCountry(Country, Pageable) - Method in class org.gbif.registry.ws.resources.OrganizationResource
listByDataset(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetOccurrenceDownloadMapper
listByDataset(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetProcessStatusMapper
listByDataset(UUID) - Method in interface org.gbif.registry.persistence.mapper.NetworkMapper
listByDataset(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.DatasetOccurrenceDownloadUsageResource
listByDownload(String, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetOccurrenceDownloadMapper
listByIdentifier(IdentifierType, String, Pageable) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
listByIdentifier(NetworkEntityMapper<T>, IdentifierType, String, Pageable) - Static method in class org.gbif.registry.persistence.WithMyBatis
listByIdentifier(IdentifierType, String, Pageable) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
listByIdentifier(String, Pageable) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
listByInstallation(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.MetasyncHistoryMapper
listByStatus(Pageable, Set<Download.Status>) - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
listByType(DatasetType, Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listByUser(String, Pageable, Set<Download.Status>) - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
listByUser(String, Pageable, Set<Download.Status>) - Method in class org.gbif.registry.ws.resources.OccurrenceDownloadResource
listComments(UUID) - Method in interface org.gbif.registry.persistence.mapper.CommentableMapper
listComments(CommentableMapper, UUID) - Static method in class org.gbif.registry.persistence.WithMyBatis
listComments(UUID) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
listConstituents(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Obtains a list of all the constituent datasets that are part of this parent dataset.
listConstituents(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listConstituents(Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listConstituents(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.NetworkResource
listContacts(UUID) - Method in interface org.gbif.registry.persistence.mapper.ContactableMapper
listContacts(ContactableMapper, UUID) - Static method in class org.gbif.registry.persistence.WithMyBatis
listContacts(UUID) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
listContacts(UUID) - Method in class org.gbif.registry.ws.resources.NodeResource
listCountries() - Method in class org.gbif.registry.ws.resources.EnumerationResource
listDatasetProcessStatus(Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listDatasetProcessStatus(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listDatasetsByInstallation(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Obtains a list of all the datasets hosted by the given installation.
listDatasetsEndorsedBy(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Obtains a list of all the datasets published by an organization that is endorsed by the given node.
listDatasetsHostedBy(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Obtains a list of all the datasets hosted by, but not published by, the given organization.
listDatasetsInNetwork(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Obtains a list of all the constituent datasets that are part of this network.
listDatasetsPublishedBy(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Obtains a list of all the datasets published by the given organization.
listDatasetsWithNoEndpoint(Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listDatasetUsages(String, Pageable) - Method in class org.gbif.registry.ws.resources.OccurrenceDownloadResource
listDeleted(Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listDeleted(Pageable) - Method in class org.gbif.registry.ws.resources.InstallationResource
listDeleted(Pageable) - Method in class org.gbif.registry.ws.resources.OrganizationResource
listDistinctCountries(Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Get the list of distinct countries of organizations that serves at least one dataset(not flagged as deleted).
listDistinctInstallations(Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Get the list of installations that serves at least one dataset (not flagged as deleted).
listDuplicates(Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
listEndpoints(UUID) - Method in interface org.gbif.registry.persistence.mapper.EndpointableMapper
listEndpoints(EndpointableMapper, UUID) - Static method in class org.gbif.registry.persistence.WithMyBatis
listEndpoints(UUID) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
listIdentifiers(UUID) - Method in interface org.gbif.registry.persistence.mapper.IdentifiableMapper
listIdentifiers(IdentifiableMapper, UUID) - Static method in class org.gbif.registry.persistence.WithMyBatis
listIdentifiers(UUID) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
listInstallationsByOrganization(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.InstallationMapper
listInstallationsEndorsedBy(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.InstallationMapper
listLegacyOrganizationsBrief() - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper
listMachineTags(UUID) - Method in interface org.gbif.registry.persistence.mapper.MachineTaggableMapper
listMachineTags(MachineTaggableMapper, UUID) - Static method in class org.gbif.registry.persistence.WithMyBatis
listMachineTags(UUID) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
listMetadata(UUID, MetadataType) - Method in class org.gbif.registry.ws.resources.DatasetResource
listMetasync(Pageable) - Method in class org.gbif.registry.ws.resources.InstallationResource
listMetasync(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.InstallationResource
listNetworks(UUID) - Method in class org.gbif.registry.ws.resources.DatasetResource
listNodeCountries() - Method in interface org.gbif.registry.persistence.mapper.NodeMapper
listNodeCountries() - Method in class org.gbif.registry.ws.resources.NodeResource
listNonPublishing(Pageable) - Method in class org.gbif.registry.ws.resources.InstallationResource
listNonPublishing(Pageable) - Method in class org.gbif.registry.ws.resources.OrganizationResource
listPendingEndorsement(Pageable) - Method in class org.gbif.registry.ws.resources.OrganizationResource
listTags(UUID) - Method in interface org.gbif.registry.persistence.mapper.TaggableMapper
listTags(TaggableMapper, UUID, String) - Static method in class org.gbif.registry.persistence.WithMyBatis
listTags(UUID, String) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
listWithFilter(Country, DatasetType, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Obtains a list of all the datasets filter optionally by a given country and optionally by a type.
listWithFilter(Country, DatasetType, UUID, Date, Date, Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper: Obtains a list of all datasets using the provided filter(s)
LOGO_URL_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants

M

MachineTaggableMapper - Interface in org.gbif.registry.persistence.mapper
MachineTagMapper - Interface in org.gbif.registry.persistence.mapper
MessageSendingEventListener - Class in org.gbif.registry.events: A Guava event bus listener that propagates messages to the postal service.
MessageSendingEventListener(MessagePublisher, EventBus, Integer) - Constructor for class org.gbif.registry.events.MessageSendingEventListener
MESSAGING_ENABLED_PROPERTY - Static variable in class org.gbif.registry.events.EventModule
MetadataMapper - Interface in org.gbif.registry.persistence.mapper
MetasyncHistoryMapper - Interface in org.gbif.registry.persistence.mapper: Mapper that perform operations on MetasyncHistory instances.

N

NAME_LANGUAGE_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
NAME_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
namespaceExistsForUser(String, String) - Method in interface org.gbif.registry.persistence.mapper.UserRightsMapper
NetworkEntityMapper<T extends org.gbif.api.model.registry.NetworkEntity> - Interface in org.gbif.registry.persistence.mapper: Mappers that perform operations on network entities.
NetworkMapper - Interface in org.gbif.registry.persistence.mapper
NetworkResource - Class in org.gbif.registry.ws.resources: A MyBATIS implementation of the service.
NetworkResource(NetworkMapper, ContactMapper, EndpointMapper, IdentifierMapper, MachineTagMapper, TagMapper, CommentMapper, DatasetMapper, EventBus, EditorAuthorizationService) - Constructor for class org.gbif.registry.ws.resources.NetworkResource
newDatasetDOI() - Method in interface org.gbif.registry.doi.DoiGenerator: Generates a new unique GBIF dataset DOI.
newDatasetDOI() - Method in class org.gbif.registry.doi.DoiGeneratorMQ
newDownloadDOI() - Method in interface org.gbif.registry.doi.DoiGenerator: Generates a new unique GBIF download DOI.
newDownloadDOI() - Method in class org.gbif.registry.doi.DoiGeneratorMQ
newInstance(UUID, Class, Class) - Static method in class org.gbif.registry.events.ChangedComponentEvent
newInstance(T, Class<T>) - Static method in class org.gbif.registry.events.CreateEvent
newInstance(T, Class<T>) - Static method in class org.gbif.registry.events.DeleteEvent
newInstance(T, T, Class<T>) - Static method in class org.gbif.registry.events.UpdateEvent
newMethodInterceptingModule() - Static method in class org.gbif.registry.ws.guice.StringTrimInterceptor: Sets up method level interception for those methods annotated with Trim.
NODE_CONTACT_EMAIL - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
NODE_KEY_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
NODE_NAME_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
NodeMapper - Interface in org.gbif.registry.persistence.mapper: For simplicity we keep ContactableMapper part of the BaseNetworkEntityMapper, but this NodeMapper does not implement those mapper methods but will throw exceptions instead ! For a Node all contacts are managed in the GBIF Filemaker IMS which we only access for reads and cannot manipulate though our Java API.
NodeResource - Class in org.gbif.registry.ws.resources
NodeResource(NodeMapper, IdentifierMapper, CommentMapper, ContactMapper, EndpointMapper, MachineTagMapper, TagMapper, OrganizationMapper, DatasetMapper, InstallationMapper, EventBus, Augmenter, EditorAuthorizationService) - Constructor for class org.gbif.registry.ws.resources.NodeResource
nonPublishing(Pageable) - Method in interface org.gbif.registry.persistence.mapper.InstallationMapper
nonPublishing(Pageable) - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper

O

oaipmh(String, String, String, String, String, String, String) - Method in class org.gbif.registry.oaipmh.OaipmhEndpoint
OAIPMH_ADMIN_EMAIL_PROPERTY - Static variable in class org.gbif.registry.oaipmh.guice.OaipmhModule
OAIPMH_BASE_URL_PROPERTY - Static variable in class org.gbif.registry.oaipmh.guice.OaipmhModule
OaipmhEndpoint - Class in org.gbif.registry.oaipmh: An OAI-PMH endpoint, using the XOAI library.
OaipmhEndpoint(RepositoryConfiguration, ItemRepository, SetRepository) - Constructor for class org.gbif.registry.oaipmh.OaipmhEndpoint
OaipmhItem - Class in org.gbif.registry.oaipmh
OaipmhItem(Dataset, List<Set>) - Constructor for class org.gbif.registry.oaipmh.OaipmhItem: Creates a new OaipmhItem instance with no metadata content.
OaipmhItem(Dataset, String, List<Set>) - Constructor for class org.gbif.registry.oaipmh.OaipmhItem
OaipmhItemRepository - Class in org.gbif.registry.oaipmh: Implementation of a XOAI ItemRepository for Dataset.
OaipmhItemRepository(DatasetResource, DatasetMapper, OrganizationMapper, CubeService) - Constructor for class org.gbif.registry.oaipmh.OaipmhItemRepository
OaipmhModule - Class in org.gbif.registry.oaipmh.guice: A Guice module that binds implementations of XOAI related classes.
OaipmhModule(Properties) - Constructor for class org.gbif.registry.oaipmh.guice.OaipmhModule
OaipmhModule(RepositoryConfiguration) - Constructor for class org.gbif.registry.oaipmh.guice.OaipmhModule
OaipmhSetRepository - Class in org.gbif.registry.oaipmh: Implementation of a XOAI SetRepository for country, installation, dataset_type sets.
OaipmhSetRepository(DatasetMapper) - Constructor for class org.gbif.registry.oaipmh.OaipmhSetRepository
OCCURRENCE_SERVICE_TYPE_1 - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
OCCURRENCE_SERVICE_TYPE_2 - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
OccurrenceDownloadMapper - Interface in org.gbif.registry.persistence.mapper: Mapper that perform operations on occurrence downloads.
OccurrenceDownloadResource - Class in org.gbif.registry.ws.resources: Occurrence download resource/web service.
OccurrenceDownloadResource(OccurrenceDownloadMapper, DatasetOccurrenceDownloadMapper, DoiGenerator, UserService, TitleLookup) - Constructor for class org.gbif.registry.ws.resources.OccurrenceDownloadResource
OccurrenceDownloadStatusTypeHandler - Class in org.gbif.registry.persistence.mapper.handler
OccurrenceDownloadStatusTypeHandler() - Constructor for class org.gbif.registry.persistence.mapper.handler.OccurrenceDownloadStatusTypeHandler
org.gbif.registry.directory - package org.gbif.registry.directory
org.gbif.registry.doi - package org.gbif.registry.doi
org.gbif.registry.events - package org.gbif.registry.events
org.gbif.registry.oaipmh - package org.gbif.registry.oaipmh
org.gbif.registry.oaipmh.guice - package org.gbif.registry.oaipmh.guice
org.gbif.registry.persistence - package org.gbif.registry.persistence
org.gbif.registry.persistence.guice - package org.gbif.registry.persistence.guice
org.gbif.registry.persistence.mapper - package org.gbif.registry.persistence.mapper
org.gbif.registry.persistence.mapper.handler - package org.gbif.registry.persistence.mapper.handler
org.gbif.registry.search - package org.gbif.registry.search
org.gbif.registry.search.guice - package org.gbif.registry.search.guice
org.gbif.registry.search.util - package org.gbif.registry.search.util
org.gbif.registry.ws.filter - package org.gbif.registry.ws.filter
org.gbif.registry.ws.guice - package org.gbif.registry.ws.guice
org.gbif.registry.ws.model - package org.gbif.registry.ws.model
org.gbif.registry.ws.provider - package org.gbif.registry.ws.provider
org.gbif.registry.ws.resources - package org.gbif.registry.ws.resources
org.gbif.registry.ws.resources.legacy - package org.gbif.registry.ws.resources.legacy
org.gbif.registry.ws.security - package org.gbif.registry.ws.security
org.gbif.registry.ws.util - package org.gbif.registry.ws.util
ORGANIZATION_KEY_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
OrganizationMapper - Interface in org.gbif.registry.persistence.mapper
OrganizationResource - Class in org.gbif.registry.ws.resources: A MyBATIS implementation of the service.
OrganizationResource(OrganizationMapper, ContactMapper, EndpointMapper, MachineTagMapper, TagMapper, IdentifierMapper, CommentMapper, DatasetMapper, InstallationMapper, EventBus, EditorAuthorizationService) - Constructor for class org.gbif.registry.ws.resources.OrganizationResource
organizationsAsGeoJSON(InstallationType) - Method in class org.gbif.registry.ws.resources.InstallationResource: This is a REST only (e.g.
organizationsByCountry(Country, Pageable) - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper: At higher levels this appears on the OrganizationService.
organizationsEndorsedBy(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper: At higher levels this appears on the NodeService, but it makes a cleaner MyBatis implementation on this mapper.

P

parseSetName(String) - Static method in class org.gbif.registry.oaipmh.OaipmhSetRepository: Parse a given setName into a SetIdentification object.
pendingEndorsements(UUID, Pageable) - Method in interface org.gbif.registry.persistence.mapper.OrganizationMapper: At higher levels this appears on the NodeService, but it makes a cleaner MyBatis implementation on this mapper.
pendingEndorsements(Pageable) - Method in class org.gbif.registry.ws.resources.NodeResource
pendingEndorsements(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.NodeResource
PredicateTypeHandler - Class in org.gbif.registry.persistence.mapper.handler: Serializes/deserializes Predicate objects into/from a JSON string.
PredicateTypeHandler() - Constructor for class org.gbif.registry.persistence.mapper.handler.PredicateTypeHandler
prepare() - Method in class org.gbif.registry.ws.model.LegacyDataset: Prepares the dataset for being persisted, ensuring the primary contact, endpoints, and type have been constructed from the injected HTTP parameters.
prepare() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Prepares the installation for being persisting, ensuring the primary contact and endpoint have been constructed from the injected HTTP parameters.
PRIMARY_CONTACT_ADDRESS_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
PRIMARY_CONTACT_DESCRIPTION_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
PRIMARY_CONTACT_EMAIL_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
PRIMARY_CONTACT_NAME_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
PRIMARY_CONTACT_PHONE_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
PRIMARY_CONTACT_TYPE_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
publishedDatasets(UUID, Pageable) - Method in class org.gbif.registry.ws.resources.OrganizationResource

Q

queuedUpdates() - Method in class org.gbif.registry.search.DatasetIndexUpdateListener: Allows an external process to observe if there are pending actions in the queue.

R

readDataset(UUID) - Method in class org.gbif.registry.ws.resources.legacy.LegacyDatasetResource: Read GBRDS Dataset, handling incoming request with path /resource/{key}.
registerDataset(DOI, DataCiteMetadata, UUID) - Method in interface org.gbif.registry.doi.DoiGenerator: Schedules a DOI metadata update with DataCite and registers the DOI if needed.
registerDataset(DOI, DataCiteMetadata, UUID) - Method in class org.gbif.registry.doi.DoiGeneratorMQ
registerDataset(LegacyDataset, SecurityContext) - Method in class org.gbif.registry.ws.resources.legacy.IptResource: Register IPT dataset, handling incoming request with path /ipt/resource.
registerDataset(LegacyDataset, SecurityContext) - Method in class org.gbif.registry.ws.resources.legacy.LegacyDatasetResource: Register GBRDS dataset, handling incoming request with path /resource.
registerDownload(DOI, DataCiteMetadata, String) - Method in interface org.gbif.registry.doi.DoiGenerator: Schedules a DOI metadata update with DataCite and registers the DOI if needed.
registerDownload(DOI, DataCiteMetadata, String) - Method in class org.gbif.registry.doi.DoiGeneratorMQ
registerEndpoint(LegacyEndpoint, SecurityContext) - Method in class org.gbif.registry.ws.resources.legacy.LegacyEndpointResource: Register Dataset Endpoint, handling incoming request with path /resource/service.
registerIpt(LegacyInstallation, SecurityContext) - Method in class org.gbif.registry.ws.resources.legacy.IptResource: Register IPT installation, handling incoming request with path /ipt/register.
RegistryMyBatisModule - Class in org.gbif.registry.persistence.guice: Sets up the persistence layer using the properties supplied.
RegistryMyBatisModule(Properties) - Constructor for class org.gbif.registry.persistence.guice.RegistryMyBatisModule
RegistryMyBatisModule.InternalRegistryServiceMyBatisModule - Class in org.gbif.registry.persistence.guice: Sets up the MyBatis structure.
RegistrySearchModule - Class in org.gbif.registry.search.guice: A guice module that sets up implementation of the search services and gives SOLR providers for search.
RegistrySearchModule(Properties) - Constructor for class org.gbif.registry.search.guice.RegistrySearchModule
RegistryWsServletListener - Class in org.gbif.registry.ws.guice: The Registry WS module.
RegistryWsServletListener() - Constructor for class org.gbif.registry.ws.guice.RegistryWsServletListener
RegistryWsServletListener(Properties) - Constructor for class org.gbif.registry.ws.guice.RegistryWsServletListener
removeConstituent(UUID, UUID) - Method in class org.gbif.registry.ws.resources.NetworkResource
requestFilters - Static variable in class org.gbif.registry.ws.guice.RegistryWsServletListener
resolveType() - Method in class org.gbif.registry.ws.model.LegacyDataset: Return the DatasetType from the Dataset's endpoints, defaulting to type METADATA if type OCCURRENCE, CHECKLIST or SAMPLING_EVENT could not be resolved.
RESOURCE_KEY_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
responseFilters - Static variable in class org.gbif.registry.ws.guice.RegistryWsServletListener
retrievePassword(UUID) - Method in class org.gbif.registry.ws.resources.OrganizationResource: This is an HTTP only method to retrieve the password for an organization.
retrieveSets(int, int) - Method in class org.gbif.registry.oaipmh.OaipmhSetRepository

S

SAMPLING_EVENT_SERVICE_TYPE - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
search(String, Pageable) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
search(NetworkEntityMapper<T>, String, Pageable) - Static method in class org.gbif.registry.persistence.WithMyBatis: The simple search option of the list.
search(String, Pageable) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: The simple search is not mapped to a URL, but called from the root path (e.g.
search(DatasetSearchRequest) - Method in class org.gbif.registry.ws.resources.DatasetResource
search(String, Pageable) - Method in class org.gbif.registry.ws.resources.DatasetResource
SecurityModule - Class in org.gbif.registry.ws.guice: Security module for the registry that extends the common GBIF authentication module with an instance of the EditorAuthorizationService.
SecurityModule(Properties) - Constructor for class org.gbif.registry.ws.guice.SecurityModule
sendCreatedEvent(CreateEvent<T>) - Method in class org.gbif.registry.events.MessageSendingEventListener
sendDeletedEvent(DeleteEvent<T>) - Method in class org.gbif.registry.events.MessageSendingEventListener
sendUpdatedEvent(UpdateEvent<T>) - Method in class org.gbif.registry.events.MessageSendingEventListener
SERVICE_TYPES_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
SERVICE_URLS_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
setAccessPointURL(String) - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
setArchiveEndpoint(Endpoint) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the endpoint of type ARCHIVE.
setCountryCoverage(List<Integer>) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setData(byte[]) - Method in class org.gbif.registry.persistence.mapper.handler.ByteArrayWrapper
setDatasetDescription(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the dataset description.
setDatasetHomepageUrl(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set homepage URL.
setDatasetKey(String) - Method in class org.gbif.registry.ws.model.LegacyEndpoint: Set the endpoint's dataset key.
setDatasetLogoUrl(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set logo URL.
setDatasetName(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the title of the dataset.
setDatasetNameLanguage(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the language of the name of the dataset as the dataset langauge.
setDecades(List<Integer>) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setDescription(String) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setDescription(String) - Method in class org.gbif.registry.search.SolrAnnotatedSuggestDataset
setDescription(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setDescription(String) - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
setDescription(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setDescriptionLanguage(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setDescriptionLanguage(String) - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
setDescriptionLanguage(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setDoi(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the Dataset DOI.
setEmlEndpoint(Endpoint) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the endpoint of type EML.
setEndpointDescription(String) - Method in class org.gbif.registry.ws.model.LegacyEndpoint: Set the endpoint description.
setEndpointType(String) - Method in class org.gbif.registry.ws.model.LegacyEndpoint: Set endpoint type.
setEndpointType(String) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set the endpoint type.
setEndpointUrl(String) - Method in class org.gbif.registry.ws.model.LegacyEndpoint: Set the endpoint URL.
setEndpointUrl(String) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set the endpoint URL.
setError(String) - Method in class org.gbif.registry.ws.model.ErrorResponse
setFeedEndpoint(Endpoint) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set the endpoint of type FEED.
setFullText(String) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setHomepageURL(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setHomepageURL(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setHostingOrganizationKey(String) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setHostingOrganizationKey(String) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set the hosting organization key.
setHostingOrganizationTitle(String) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setIptDescription(String) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set the description.
setIptKey(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the IPT key.
setIptName(String) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set the title.
setKey(String) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setKey(String) - Method in class org.gbif.registry.search.SolrAnnotatedSuggestDataset
setKey(String) - Method in class org.gbif.registry.ws.model.IptEntityResponse
setKey(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setKey(String) - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
setKey(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationBriefResponse
setKey(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setKeywords(List<String>) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setName(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setName(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationBriefResponse
setName(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setNameLanguage(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setNameLanguage(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setNodeContactEmail(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setNodeKey(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setNodeName(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setOrganisationKey(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setOrganisationKey(String) - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
setOrganizationKey(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the publishing organization key, a mandatory field.
setOrganizationKey(UUID) - Method in class org.gbif.registry.ws.model.LegacyEndpoint: Set the publishing organization key of the dataset to which the endpoint is associated.
setParameter(PreparedStatement, int, DOI, JdbcType) - Method in class org.gbif.registry.persistence.mapper.handler.DOITypeHandler
setParameter(PreparedStatement, int, Download.Status, JdbcType) - Method in class org.gbif.registry.persistence.mapper.handler.OccurrenceDownloadStatusTypeHandler
setParameter(PreparedStatement, int, Predicate, JdbcType) - Method in class org.gbif.registry.persistence.mapper.handler.PredicateTypeHandler
setPrimaryContact(Contact) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the primary contact.
setPrimaryContact(Contact) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set the primary contact.
setPrimaryContactAddress(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set primary contact address.
setPrimaryContactAddress(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setPrimaryContactAddress(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setPrimaryContactDescription(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set primary contact description.
setPrimaryContactDescription(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setPrimaryContactDescription(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setPrimaryContactEmail(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set primary contact email and check if it is a valid email address.
setPrimaryContactEmail(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setPrimaryContactEmail(String) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set primary contact email and check if it is a valid email address.
setPrimaryContactEmail(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setPrimaryContactName(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set primary contact name.
setPrimaryContactName(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setPrimaryContactName(String) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set primary contact name.
setPrimaryContactName(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setPrimaryContactPhone(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set primary contact phone.
setPrimaryContactPhone(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setPrimaryContactPhone(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setPrimaryContactType(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set primary contact type.
setPrimaryContactType(String) - Method in class org.gbif.registry.ws.model.LegacyDatasetResponse
setPrimaryContactType(String) - Method in class org.gbif.registry.ws.model.LegacyInstallation: Set primary contact type.
setPrimaryContactType(String) - Method in class org.gbif.registry.ws.model.LegacyOrganizationResponse
setPublishingCountry(Integer) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setPublishingOrganizationKey(String) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setPublishingOrganizationTitle(String) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setResourceKey(String) - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
setServiceTypes(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the serviceTypes, a concatenated list of service types.
setServiceUrls(String) - Method in class org.gbif.registry.ws.model.LegacyDataset: Set the serviceUrls, a concatenated list of service URLs.
setSubtype(Integer) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setSubtype(Integer) - Method in class org.gbif.registry.search.SolrAnnotatedSuggestDataset
setTitle(String) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setTitle(String) - Method in class org.gbif.registry.search.SolrAnnotatedSuggestDataset
setType(Integer) - Method in class org.gbif.registry.search.SolrAnnotatedDataset
setType(Integer) - Method in class org.gbif.registry.search.SolrAnnotatedSuggestDataset
setType(String) - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
setTypeDescription(String) - Method in class org.gbif.registry.ws.model.LegacyEndpointResponse
setWsPassword(String) - Method in class org.gbif.registry.ws.model.LegacyInstallation
SolrAnnotatedDataset - Class in org.gbif.registry.search: Annotated version of the dataset search result providing the required mapping to the SOLR schema and translation between String to UUID as SOLR does not support UUID well.
SolrAnnotatedDataset() - Constructor for class org.gbif.registry.search.SolrAnnotatedDataset
SolrAnnotatedSuggestDataset - Class in org.gbif.registry.search: This class contains the annotations required by SuggestService and the Solr result/object mapping.
SolrAnnotatedSuggestDataset() - Constructor for class org.gbif.registry.search.SolrAnnotatedSuggestDataset
startDocument() - Method in class org.gbif.registry.search.FullTextSaxHandler
startElement(String, String, String, Attributes) - Method in class org.gbif.registry.search.FullTextSaxHandler
StaticContentFilter - Class in org.gbif.registry.ws.filter: A filter that will look for the /web/* content and then stop all subsequent filters from firing.
StaticContentFilter() - Constructor for class org.gbif.registry.ws.filter.StaticContentFilter
StringTrimInterceptor - Class in org.gbif.registry.ws.guice: An interceptor that will trim all possible strings of a bean.
StringTrimInterceptor() - Constructor for class org.gbif.registry.ws.guice.StringTrimInterceptor
SubclassValidationModule - Class in org.gbif.registry.ws.guice
SubclassValidationModule() - Constructor for class org.gbif.registry.ws.guice.SubclassValidationModule
subdatasets(Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
suggest(DatasetSuggestRequest) - Method in class org.gbif.registry.ws.resources.DatasetResource
supportSets() - Method in class org.gbif.registry.oaipmh.OaipmhSetRepository
synchronize(UUID) - Method in class org.gbif.registry.ws.resources.InstallationResource: This is a REST only (e.g.

T

TaggableMapper - Interface in org.gbif.registry.persistence.mapper
TagMapper - Interface in org.gbif.registry.persistence.mapper
TECHNICAL_CONTACT_TYPE - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
TimeSeriesExtractor - Class in org.gbif.registry.search.util: A utility to extract decades (eg 1980, 1840) or centuries (eg 1400, 1500, 1600) from TemporalCoverages as a list of integers.
TimeSeriesExtractor(int, int, int, int) - Constructor for class org.gbif.registry.search.util.TimeSeriesExtractor
title(UUID) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
toApiDataset() - Method in class org.gbif.registry.ws.model.LegacyDataset: Return a new GBIF API Dataset instance, derived from the LegacyDataset.
toApiInstallation() - Method in class org.gbif.registry.ws.model.LegacyInstallation: Return a new GBIF API Installation instance, derived from the LegacyInstallation.
Trim - Annotation Type in org.gbif.registry.ws.guice: Indicates that the field is suitable for String trimming.
truncateConstituents(DOI, String, URI) - Static method in class org.gbif.registry.ws.util.DataCiteConverter: Removes all constituent relations and description entries from the metadata.
truncateDescription(DOI, String, URI) - Static method in class org.gbif.registry.ws.util.DataCiteConverter
TYPE_DESCRIPTION_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
TYPE_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants

U

update(DatasetProcessStatus) - Method in interface org.gbif.registry.persistence.mapper.DatasetProcessStatusMapper
update(DOI, DoiData, String) - Method in interface org.gbif.registry.persistence.mapper.DoiMapper
update(T) - Method in interface org.gbif.registry.persistence.mapper.NetworkEntityMapper
update(Download) - Method in interface org.gbif.registry.persistence.mapper.OccurrenceDownloadMapper
update(NetworkEntityMapper<T>, T) - Static method in class org.gbif.registry.persistence.WithMyBatis
update(UUID, T, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the path variable for the key matches the entity's key, ensures that the caller is authorized to perform the action and then adds the server controlled field modifiedBy.
update(T) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
update(Dataset) - Method in class org.gbif.registry.ws.resources.DatasetResource
update(Download) - Method in class org.gbif.registry.ws.resources.OccurrenceDownloadResource
updateContact(UUID, Integer, ContactType, boolean) - Method in interface org.gbif.registry.persistence.mapper.ContactableMapper: Updates the contact if it exists, updating the type and is_primary columns.
updateContact(Contact) - Method in interface org.gbif.registry.persistence.mapper.ContactMapper
updateContact(ContactMapper, ContactableMapper, UUID, Contact) - Static method in class org.gbif.registry.persistence.WithMyBatis
updateContact(UUID, int, Contact, SecurityContext) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource: This method ensures that the caller is authorized to perform the action and then adds the server controlled field for modifiedBy.
updateContact(UUID, Contact) - Method in class org.gbif.registry.ws.resources.BaseNetworkEntityResource
updated(UpdateEvent<T>) - Method in class org.gbif.registry.events.VarnishPurgeListener
updated(UpdateEvent<T>) - Method in class org.gbif.registry.search.DatasetIndexUpdateListener
updateDataset(UUID, LegacyDataset, SecurityContext) - Method in class org.gbif.registry.ws.resources.legacy.IptResource: Update IPT Dataset, handling incoming request with path /ipt/resource/{key}.
updateDataset(UUID, LegacyDataset, SecurityContext) - Method in class org.gbif.registry.ws.resources.legacy.LegacyDatasetResource: Update GBRDS Dataset, handling incoming request with path /resource/{key}.
updateDatasetProcessStatus(DatasetProcessStatus) - Method in class org.gbif.registry.ws.resources.DatasetResource
updatedComponent(ChangedComponentEvent) - Method in class org.gbif.registry.search.DatasetIndexUpdateListener
UpdateEvent<T extends org.gbif.api.model.registry.NetworkEntity> - Class in org.gbif.registry.events: This event is fired after a new network entity has been successfully updated.
updateIpt(UUID, LegacyInstallation, SecurityContext) - Method in class org.gbif.registry.ws.resources.legacy.IptResource: Update IPT installation, handling incoming request with path /ipt/update/{key}.
updatePrimaryContacts(UUID, ContactType) - Method in interface org.gbif.registry.persistence.mapper.ContactableMapper: Updates the current primary contact of the given type if it exists and makes it non primary.
updatePrimaryContacts(UUID, ContactType) - Method in interface org.gbif.registry.persistence.mapper.NodeMapper: This method is not supported by the NodeMapper.
UserRightsMapper - Interface in org.gbif.registry.persistence.mapper
UserRoles - Class in org.gbif.registry.ws.security: Simple utils class to expose the API user role enumeration also as static strings required by the JSR 250 annotations.
UserRoles() - Constructor for class org.gbif.registry.ws.security.UserRoles
UUIDHashSet() - Constructor for class org.gbif.registry.events.VarnishPurgeListener.UUIDHashSet

V

validateField(String, int) - Static method in class org.gbif.registry.ws.util.LegacyResourceUtils: Checks if a field consists of the minimum number of characters.
valueOf(String) - Static method in enum org.gbif.registry.doi.DoiType: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.gbif.registry.doi.DoiType: Returns an array containing the constants of this enum type, in the order they are declared.
VarnishPurgeListener - Class in org.gbif.registry.events: A event bus listener that will flush varnish if registry entities like datasets and organizations have been created, modified or deleted.
VarnishPurgeListener(CloseableHttpClient, EventBus, URI, OrganizationService, InstallationService, DatasetService) - Constructor for class org.gbif.registry.events.VarnishPurgeListener
VarnishPurgeListener.UUIDHashSet - Class in org.gbif.registry.events: HashSet with an overriden add method that silently ignores null values being added.
VarnishPurgeModule - Class in org.gbif.registry.events: A Guice module that sets up implementation of the varnish purging via the event bus.
VarnishPurgeModule(Properties) - Constructor for class org.gbif.registry.events.VarnishPurgeModule

W

WithMyBatis - Class in org.gbif.registry.persistence
withNoEndpoint(Pageable) - Method in interface org.gbif.registry.persistence.mapper.DatasetMapper
WS_PAGE_SIZE - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants
WS_PASSWORD_PARAM - Static variable in class org.gbif.registry.ws.util.LegacyResourceConstants

X

xsltTransformer(String) - Method in class org.gbif.registry.oaipmh.OaipmhEndpoint

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