Index (GBIF Parsers 0.67-SNAPSHOT API)

A B C D E F G H I J K L M N O P Q R S T U V W Y Z

A

AbstractGbifUser - Class in org.gbif.api.model.common: An abstract GBIF user account.
AbstractGbifUser() - Constructor for class org.gbif.api.model.common.AbstractGbifUser
acceptFormatter(TemporalCoverageFormatterVisitor) - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
acceptFormatter(TemporalCoverageFormatterVisitor) - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
acceptFormatter(TemporalCoverageFormatterVisitor) - Method in class org.gbif.api.model.registry.eml.temporal.TemporalCoverage: Accept a TemporalCoverageFormatterVisitor for formatting purpose.
acceptFormatter(TemporalCoverageFormatterVisitor) - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
accessionStatus(AccessionStatus) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
AccessionStatus - Enum in org.gbif.api.vocabulary.collections: Describe how a collection is added or joined to an institution.
active(boolean) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
active(boolean) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
add(T) - Method in class org.gbif.utils.collection.CompactHashSet: Adds the specified element to this set if it is not already present.
addAddress(String) - Method in class org.gbif.api.model.registry.Contact
addBasisOfRecordFilter(BasisOfRecord) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addCatalogNumberFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addChecklistFilter(UUID) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addClassKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addCollectionKeyFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addComment(UUID, Comment) - Method in interface org.gbif.api.service.registry.CommentService: Add a new Comment to a target entity.
addConstituent(UUID, UUID) - Method in interface org.gbif.api.service.registry.NetworkService: Adds an existing dataset to the list of constituents of a network.
addContact(Contact) - Method in class org.gbif.api.model.registry.eml.Project: Add contact to Contact List.
addContact(UUID, Contact) - Method in interface org.gbif.api.service.registry.ContactService: Add a new Contact to a target entity.
addContactPerson(UUID, Contact) - Method in interface org.gbif.api.service.collections.ContactService: Adds a Contact contact to an entity.
addContinentFilter(Continent) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addContinentFilter(Continent) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest: Filters dataset by a continent of the geospatial coverage.
addCoordinateUncertaintyInMetersFilter(double) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addCountryFilter(Country) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addCountryFilter(Country) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest: Filters dataset by a country of the geospatial coverage.
addCoverages(TaxonomicCoverage) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
addCuratorialUnitComposite(CuratorialUnitComposite) - Method in class org.gbif.api.model.registry.eml.Collection: Adds a CuratorialUnitComposite to the Collection's list of CuratorialUnitComposit.
addDatasetKeyFilter(UUID) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addDecadeFilter(int) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest: Filters datasets by their temporal coverage broken down to decades.
addDecimalLatitudeFilter(double) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addDecimalLongitudeFilter(double) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addDescription(int, Language, String) - Method in class org.gbif.api.model.checklistbank.TableOfContents
addDeviation(String) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
addElevationFilter(double) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addEmail(String) - Method in class org.gbif.api.model.registry.Contact
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Dataset
addEndpoint(Endpoint) - Method in interface org.gbif.api.model.registry.Endpointable
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Installation
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Network
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Node
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Organization
addEndpoint(UUID, Endpoint) - Method in interface org.gbif.api.service.registry.EndpointService: Add a new Endpoint to a target entity.
addEstablishmentMeansFilter(EstablishmentMeans) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addEventDateFilter(IsoDateInterval) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addExecution(PipelineExecution) - Method in class org.gbif.api.model.pipelines.PipelineProcess
addExtinctFilter(boolean) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addFacetPage(P, int, int) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest: Sets the paging setting of facet parameter.
addFacets(P...) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
addFamilyKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addGadmGidFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addGadmLevel0GidFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addGadmLevel1GidFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addGadmLevel2GidFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addGadmLevel3GidFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addGenusKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addGeometryFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addHabitatFilter(Habitat) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addHasCoordinateFilter(boolean) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addHigherTaxonFilter(int) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addHomepage(URI) - Method in class org.gbif.api.model.registry.Contact
addHostingOrgFilter(UUID) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
addIdentifiedByFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addIdentifiedByIdsFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addIdentifier(UUID, Identifier) - Method in interface org.gbif.api.service.registry.IdentifierService: Add a new Identifier to a target entity.
addInstitutionCodeFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addInstitutionKeyFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addIssue(NameUsageIssue) - Method in class org.gbif.api.model.checklistbank.NameUsage
addIssue(OccurrenceIssue) - Method in class org.gbif.api.model.occurrence.Occurrence
addIssue(OccurrenceIssue) - Method in class org.gbif.common.parsers.core.OccurrenceParseResult
addIssueFilter(NameUsageIssue) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addIssueFilter(OccurrenceIssue) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addKeyword(String) - Method in class org.gbif.api.model.registry.eml.KeywordCollection: Add keyword to keywords Set.
addKeywordFilter(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest: Filters datasets by a keyword given in EML or as simple, public tags.
addKeywordFilter(Tag) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest: Filters dataset by a tag.
addKingdomKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addLastInterpretedFilter(Date) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addMachineTag(MachineTag) - Method in class org.gbif.api.model.collections.Collection
addMachineTag(MachineTag) - Method in class org.gbif.api.model.collections.Institution
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Dataset
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Endpoint
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Installation
addMachineTag(MachineTag) - Method in interface org.gbif.api.model.registry.MachineTaggable
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Network
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Node
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Organization
addMachineTag(UUID, MachineTag) - Method in interface org.gbif.api.service.registry.MachineTagService: Add a new MachineTag to a target entity.
addMachineTag(UUID, TagName, String) - Method in interface org.gbif.api.service.registry.MachineTagService: Add a new MachineTag to a target entity.
addMachineTag(UUID, String, String, String) - Method in interface org.gbif.api.service.registry.MachineTagService: Add a new MachineTag to a target entity.
addMasterSourceMetadata(UUID, MasterSourceMetadata) - Method in interface org.gbif.api.service.collections.CollectionEntityService: Adds MasterSourceMetadata to an entity.
addMediaTypeFilter(MediaType) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addMethodStep(String) - Method in class org.gbif.api.model.registry.eml.SamplingDescription
addMetricInfo(PipelineStep.MetricInfo) - Method in class org.gbif.api.model.pipelines.PipelineStep
addMonthFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addOccurrenceIDFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addOccurrenceMapping(UUID, OccurrenceMapping) - Method in interface org.gbif.api.service.collections.OccurrenceMappingService: Add a new OccurrenceMapping to a target entity.
addOccurrenceStatusFilter(OccurrenceStatus) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addOffset(long) - Method in class org.gbif.api.model.common.paging.PageableBase: Adds to existing offset, setting offset to zero if it would be negative.
addOrderKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addOriginFilter(Origin) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addParameter(P, Iterable<String>) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified parameter.
addParameter(P, String...) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified parameter.
addParameter(P, String) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified parameter.
addParameter(P, long) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified long parameter.
addParameter(P, int) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified int parameter.
addParameter(P, double) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified double parameter.
addParameter(P, boolean) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified boolean parameter.
addParameter(P, Enum<?>) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified parameter.
addParameter(P, Date) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified date parameter as an ISO date.
addParameter(P, IsoDateInterval) - Method in class org.gbif.api.model.common.search.SearchRequest: Adds the specified date parameter as an ISO date interval.
addPhone(String) - Method in class org.gbif.api.model.registry.Contact
addPhylumKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addPipelineExecution(long, PipelineExecution) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Adds/persists the information of a pipeline execution.
addPoint(Point) - Method in class org.gbif.api.model.registry.eml.geospatial.Polygon
addPosition(String) - Method in class org.gbif.api.model.registry.Contact
addProjectIdentifier(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
addPublishingCountryFilter(Country) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addPublishingCountryFilter(Country) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest: Filters dataset by the owning organizations country.
addPublishingOrgFilter(UUID) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
addRankFilter(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addReason(Match.Reason) - Method in class org.gbif.api.model.collections.lookup.Match
addRecordedByFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addRecordedByIdsFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addRecordNumberFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
Address - Class in org.gbif.api.model.collections: The particulars of the place where a institution of collection is situated.
Address() - Constructor for class org.gbif.api.model.collections.Address
Address - Interface in org.gbif.api.model.registry: A package visible providing the commonality for addresses, including the constraint validations.
addRole(UserRole) - Method in class org.gbif.api.model.common.AbstractGbifUser
addRole(UserRole) - Method in class org.gbif.api.model.common.User: Deprecated.
addSpatialIssueFilter(boolean) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addSpeciesKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addStep(PipelineStep) - Method in class org.gbif.api.model.pipelines.PipelineExecution
addStep(StepType) - Method in class org.gbif.api.model.pipelines.RunPipelineResponse.Builder
addStepFailed(StepType) - Method in class org.gbif.api.model.pipelines.RunPipelineResponse.Builder
addSubGenusKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addSubTypeFilter(DatasetSubtype) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
addTag(UUID, String) - Method in interface org.gbif.api.service.registry.TagService: Add a new Tag to a target entity.
addTag(UUID, Tag) - Method in interface org.gbif.api.service.registry.TagService: Add a new Tag to a target entity.
addTaxonKey(int) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
addTaxonKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addTaxonomicStatusFilter(TaxonomicStatus) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addTaxonomicStatusFilter(NomenclaturalStatus) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addThreatStatusFilter(ThreatStatus) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
addTypeFilter(DatasetType) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
addTypeStatusFilter(TypeStatus) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
addUserId(String) - Method in class org.gbif.api.model.registry.Contact
addUserId(String, String) - Method in class org.gbif.api.model.registry.Contact: Adds a new user id that is assembled from a directory name and a local id within it.
addYear(int) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
addYearFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
AgentIdentifier - Class in org.gbif.api.model.occurrence
AgentIdentifier() - Constructor for class org.gbif.api.model.occurrence.AgentIdentifier
AgentIdentifier(AgentIdentifierType, String) - Constructor for class org.gbif.api.model.occurrence.AgentIdentifier
AgentIdentifier(String) - Constructor for class org.gbif.api.model.occurrence.AgentIdentifier
AgentIdentifierType - Enum in org.gbif.api.vocabulary: Enumeration for user identifiers like ORCID, WIKIDATA and etc
all() - Method in interface org.gbif.api.model.pipelines.InterpretationType
all() - Method in enum org.gbif.api.model.pipelines.InterpretationType.RecordType
allowAbsentIndentifiers(UUID, int) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Mark failed identifier stage as finished and continue interpretation process for datasets were identifier stage failed because of a threshold limit
allowAbsentIndentifiers(UUID) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Mark latest failed identifier stage as finished and continue interpretation process for datasets were identifier stage failed because of a threshold limit
AlternativeCode - Class in org.gbif.api.model.collections: Models a GrSciColl alternative code.
AlternativeCode() - Constructor for class org.gbif.api.model.collections.AlternativeCode
AlternativeCode(String, String) - Constructor for class org.gbif.api.model.collections.AlternativeCode
alternativeCode(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
alternativeCode(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
AlternativeMatches - Class in org.gbif.api.model.collections.lookup: Holds the alternative results of the collections lookup.
AlternativeMatches() - Constructor for class org.gbif.api.model.collections.lookup.AlternativeMatches
AnnotationUtils - Class in org.gbif.api.util: Utility method to work with annotations.
AnnotationUtils - Class in org.gbif.utils: Utility method to work with annotations.
append(Response<R>) - Method in class org.gbif.api.model.common.messaging.ResponseChain: Adds a response to the list of related response.
append2DigitsYearDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>, Year) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateParserListBuilder
append2DigitsYearDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>, String, String, Year) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateParserListBuilder
appendDateTimeFormatter(DateTimeFormatter, DateComponentOrdering, TemporalQuery<?>, int) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder
appendDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder
appendDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>, Year) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder
appendDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>, String, String) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder
appendDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>, String, String, Year) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder
appendDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateParserListBuilder
appendDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>, ZoneId) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateParserListBuilder
appendDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>[]) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateParserListBuilder
appendDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>, String, String) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateParserListBuilder
appendDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>[], String, String) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateParserListBuilder
applyChangeSuggestion(int) - Method in interface org.gbif.api.service.collections.ChangeSuggestionService
ApplySuggestionResult - Class in org.gbif.api.model.collections.suggestions: Result returned by the API when a ChangeSuggestion is applied.
ApplySuggestionResult() - Constructor for class org.gbif.api.model.collections.suggestions.ApplySuggestionResult
AppPrincipal - Class in org.gbif.api.model.common: Similar to GbifUserPrincipal but represents an application instead of a user.
AppPrincipal(String, String) - Constructor for class org.gbif.api.model.common.AppPrincipal: AppPrincipal constructor.
AppRole - Enum in org.gbif.api.vocabulary: Role(s) that can be assigned to authenticated application.
arrayMerge(T[]...) - Static method in class org.gbif.utils.collection.ArrayUtils
arrayMerge(byte[]...) - Static method in class org.gbif.utils.collection.ArrayUtils
ArrayUtils - Class in org.gbif.utils.collection
ascii(String) - Static method in class org.gbif.api.util.UnicodeUtils: Replaces all diacretics with their ascii counterpart.
ASCIIParser - Class in org.gbif.common.parsers.core: This class converts alphabetic, numeric, and symbolic Unicode characters which are not in the first 127 ASCII characters (the "Basic Latin" Unicode block) into their ASCII equivalents, if one exists.
at(Dimension<Country>, Country) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder: Adds an country type dimension to the address.
at(Dimension<Language>, Language) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder: Adds an language type dimension to the address.
at(Dimension<? extends Enum<?>>, Enum<?>) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder: Adds an enumerated type dimension to the address.
at(Dimension<Boolean>, boolean) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder: Adds a boolen typed dimension to the address.
at(Dimension<Double>, double) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder: Adds a double typed dimension to the address.
at(Dimension<Float>, float) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder: Adds a float typed dimension to the address.
at(Dimension<Integer>, int) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder: Adds an integer typed dimension to the address.
at(Dimension<String>, String) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder: Adds an String typed dimension to the address.
at(Dimension<UUID>, UUID) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder: Adds a UUID typed dimension to the address.
AtomizedLocalDate - Class in org.gbif.common.parsers.date: AtomizedLocalDate is a simple immutable class to hold local date data from a TemporalAccessor.
AtomizedLocalDateTime - Class in org.gbif.common.parsers.date: Still experimental, the class should probably require to have a LocalDate otherwise the output of getResolution can not be comparable with AtomizedLocalDate AtomizedLocalDateTime is a simple immutable class to hold local date and time data from a TemporalAccessor.
authenticate(String, String) - Method in interface org.gbif.api.service.common.IdentityAccessService: Authenticates a user.
authenticate(String, String) - Method in interface org.gbif.api.service.common.UserService: Deprecated.

Authenticates a user.
authorityUrl(String) - Static method in class org.gbif.utils.rs.RsGbifOrg
authorshipComplete() - Method in class org.gbif.api.model.checklistbank.ParsedName
availableExtensionResources() - Static method in enum org.gbif.api.vocabulary.Extension
availableExtensions() - Static method in enum org.gbif.api.vocabulary.Extension

B

BaseChangeSuggestion<T extends CollectionEntity> - Class in org.gbif.api.model.collections.suggestions
BaseChangeSuggestion() - Constructor for class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
BaseEntityMatched - Class in org.gbif.api.model.collections.lookup
BaseEntityMatched() - Constructor for class org.gbif.api.model.collections.lookup.BaseEntityMatched
BasePager<T> - Class in org.gbif.api.util.iterables: Iterator over registry entities from paging responses that filters out deleted entities.
BasePager(int) - Constructor for class org.gbif.api.util.iterables.BasePager
BASIS_OF_RECORD - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
BasisOfRecord - Enum in org.gbif.api.vocabulary: A simple enumeration of all DarwinCore values of BasisOfRecord legal for occurrences.
BasisOfRecordJsonDeserializer() - Constructor for class org.gbif.api.jackson.BasisOfRecordSerde.BasisOfRecordJsonDeserializer
BasisOfRecordJsonSerializer() - Constructor for class org.gbif.api.jackson.BasisOfRecordSerde.BasisOfRecordJsonSerializer
BasisOfRecordParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/basisOfRecord.txt.
BasisOfRecordSerde - Class in org.gbif.api.jackson: Serializer for BasisOfRecord.
BasisOfRecordSerde() - Constructor for class org.gbif.api.jackson.BasisOfRecordSerde
BasisOfRecordSerde.BasisOfRecordJsonDeserializer - Class in org.gbif.api.jackson: Jackson JsonDeserializer for BasisOfRecord.
BasisOfRecordSerde.BasisOfRecordJsonSerializer - Class in org.gbif.api.jackson: Jackson JsonSerializer for BasisOfRecord.
Batch - Class in org.gbif.api.model.collections: A batch that can contain either institutions or collections to create or update them in bulk.
Batch() - Constructor for class org.gbif.api.model.collections.Batch
Batch.State - Enum in org.gbif.api.model.collections
BatchService - Interface in org.gbif.api.service.collections: Defines the service to work with batches.
BatchView - Class in org.gbif.api.model.collections.view
BatchView(Batch) - Constructor for class org.gbif.api.model.collections.view.BatchView
bestResolution(TemporalAccessor, TemporalAccessor) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: The idea of "best resolution" TemporalAccessor is to get the TemporalAccessor that offers more resolution than the other, but they must NOT contradict.
BigDecimalUtils - Class in org.gbif.utils.number: Utility class to work with BigDecimal.
BlacklistedNames - Class in org.gbif.common.parsers.utils: Set of bad names in UPPERCASE.
BomSafeInputStreamWrapper - Class in org.gbif.utils.file: Deprecated.
use org.apache.commons.io.input.BOMInputStream instead
BomSafeInputStreamWrapper(InputStream) - Constructor for class org.gbif.utils.file.BomSafeInputStreamWrapper: Deprecated.
BooleanParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/boolean.txt.
BoundingBox - Class in org.gbif.api.model.registry.eml.geospatial: Geographic coverage geometry in the form of 4 sided bounding box.
BoundingBox() - Constructor for class org.gbif.api.model.registry.eml.geospatial.BoundingBox
BoundingBox(double, double, double, double) - Constructor for class org.gbif.api.model.registry.eml.geospatial.BoundingBox
build() - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
build() - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
build() - Method in class org.gbif.api.model.common.messaging.Request.Builder
build() - Method in class org.gbif.api.model.common.messaging.Response.Builder
build() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
build() - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
build() - Method in class org.gbif.api.model.metrics.RecordError.Builder: Deprecated.
build() - Method in class org.gbif.api.model.pipelines.RunPipelineResponse.Builder
build() - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder
build() - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateParserListBuilder
build(File, String, boolean) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory: Build a CSVReader with specific delimiter and presence or not of a header line.
build(File, String, String, Character, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory: Build a CSVReader with specific encoding, delimiter, quotes character and number of header row(s).
build(File, String, String, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory: Build a CSVReader with specific encoding, delimiter and number of header row(s) but default quote character (quotation marks)
build(InputStream, String, String, Character, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory: Build a CSVReader with specific encoding, delimiter quotes and number of header row(s)
build(File, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory: Build a CSVReader and try to detect the encoding, delimiter and quotes.
build(File) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory: Assumes 1 header row
builder() - Static method in class org.gbif.api.model.collections.request.CollectionSearchRequest
Builder() - Constructor for class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
builder() - Static method in class org.gbif.api.model.collections.request.InstitutionSearchRequest
Builder() - Constructor for class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
Builder() - Constructor for class org.gbif.api.model.common.messaging.Request.Builder
Builder() - Constructor for class org.gbif.api.model.common.messaging.Response.Builder
builder() - Static method in class org.gbif.api.model.crawler.DatasetProcessStatus
Builder() - Constructor for class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
builder() - Static method in class org.gbif.api.model.metrics.RecordError: Deprecated.
Builder() - Constructor for class org.gbif.api.model.metrics.RecordError.Builder: Deprecated.
builder() - Static method in class org.gbif.api.model.pipelines.RunPipelineResponse
builder(RunPipelineResponse) - Static method in class org.gbif.api.model.pipelines.RunPipelineResponse
Builder() - Constructor for class org.gbif.api.model.pipelines.RunPipelineResponse.Builder
buildName(boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Method in class org.gbif.api.model.checklistbank.ParsedName: build a name controlling all available flags for name parts to be included in the resulting name.
buildQuery(Predicate) - Method in interface org.gbif.api.query.QueryVisitor
buildTabReader(InputStream, String, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
buildUtf8TabReader(InputStream) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
byNubUsageId(int) - Static method in enum org.gbif.api.vocabulary.Kingdom: Deprecated.
please use byNubUsageId(int) instead
byNubUsageKey(int) - Static method in enum org.gbif.api.vocabulary.Kingdom: Looks up a kingdom by its nub usage key.
byteArrayToInt(byte[]) - Static method in class org.gbif.utils.collection.ArrayUtils
bytes(long) - Static method in class org.gbif.utils.HumanSize

C

cancel(String) - Method in interface org.gbif.api.service.occurrence.DownloadRequestService: Cancels running download.
canonicalName() - Method in class org.gbif.api.model.checklistbank.ParsedName: The canonical name sensu strictu with nothing else but 3 name parts at max (genus, species, infraspecific).
canonicalName(String, Rank) - Static method in class org.gbif.common.parsers.utils.ClassificationUtils: Parses a canonical name at a specific Rank.
canonicalName(String) - Static method in class org.gbif.common.parsers.utils.ClassificationUtils: Parses a scientific name and creates the canonical name including a potential hybrid and rank marker plus the cultivar and strain names if existing.
canonicalNameComplete() - Method in class org.gbif.api.model.checklistbank.ParsedName: The code-compliant, canonical name with rank and hybrid marker, authorship and cultivar or strain name included.
canonicalNameWithMarker() - Method in class org.gbif.api.model.checklistbank.ParsedName: The code-compliant, canonical name with three name parts at max (genus, species, infraspecific), a rank marker for infraspecific names and cultivar or strain epithets.
canonicalSpeciesName() - Method in class org.gbif.api.model.checklistbank.ParsedName
catalogNumber(String) - Method in class org.gbif.api.model.metrics.RecordError.Builder: Deprecated.
CellIdUtils - Class in org.gbif.common.parsers.geospatial: Utilities for dealing with CellId.
ChallengeCode - Class in org.gbif.api.model: Encapsulate a challenge code.
ChallengeCode() - Constructor for class org.gbif.api.model.ChallengeCode
Change - Class in org.gbif.api.model.collections.suggestions
Change() - Constructor for class org.gbif.api.model.collections.suggestions.Change
ChangeSuggestion<T extends CollectionEntity> - Interface in org.gbif.api.model.collections.suggestions
ChangeSuggestionService<T extends CollectionEntity,R extends ChangeSuggestion<T>> - Interface in org.gbif.api.service.collections: Defines the service to suggest changes in GRSciColl entities.
CharsetDetection - Class in org.gbif.utils.file: Utility class to guess the encoding of a given file or byte array.
checkArgument(boolean) - Static method in class org.gbif.api.util.PreconditionUtils: Ensures the truth of an expression involving one or more parameters to the calling method.
checkArgument(boolean, Object) - Static method in class org.gbif.api.util.PreconditionUtils: Ensures the truth of an expression involving one or more parameters to the calling method.
checkArgument(boolean) - Static method in class org.gbif.utils.PreconditionUtils: Ensures the truth of an expression involving one or more parameters to the calling method.
checkArgument(boolean, Object) - Static method in class org.gbif.utils.PreconditionUtils: Ensures the truth of an expression involving one or more parameters to the calling method.
CHECKLIST_DATASET_SUBTYPES - Static variable in enum org.gbif.api.vocabulary.DatasetSubtype: A set of all DatasetSubtype that belong to DatasetType CHECKLIST.
checkState(boolean) - Static method in class org.gbif.utils.PreconditionUtils: Ensures the truth of an expression involving the state of the calling instance, but not involving any parameters to the calling method.
checkState(boolean, Object) - Static method in class org.gbif.utils.PreconditionUtils: Ensures the truth of an expression involving the state of the calling instance, but not involving any parameters to the calling method.
Citation - Class in org.gbif.api.model.registry: A citation can have one or both of a textual component and an identifier which can be of any form, but expected to be resolvable in some way such as an LSID, DOI or similar.
Citation() - Constructor for class org.gbif.api.model.registry.Citation
Citation(String, String, boolean) - Constructor for class org.gbif.api.model.registry.Citation
CitationContact - Class in org.gbif.api.model.registry: A contact used to generate a dataset citation.
CitationContact() - Constructor for class org.gbif.api.model.registry.CitationContact
CitationContact(Integer, String, String, String, Set<ContactType>, Set<String>) - Constructor for class org.gbif.api.model.registry.CitationContact
CitationData() - Constructor for class org.gbif.api.util.CitationGenerator.CitationData
CitationGenerator - Class in org.gbif.api.util: Helper class tha generates a Citation String from Dataset and Organization objects.
CitationGenerator.CitationData - Class in org.gbif.api.util
CitesAppendix - Enum in org.gbif.api.vocabulary: Vocabulary for the 3 CITES (Convention on International Trade in Endangered Species of Wild Fauna and Flora) Appendix numbers.
CitesAppendixParser - Class in org.gbif.common.parsers
city(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
city(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
ClassificationUtils - Class in org.gbif.api.util
ClassificationUtils - Class in org.gbif.common.parsers.utils: Utilities to work on classifications.
classpath2Filepath(String) - Static method in class org.gbif.utils.file.FileUtils
classpathStream(String) - Static method in class org.gbif.utils.file.FileUtils
classpathStream(String) - Method in class org.gbif.utils.file.InputStreamUtils
clean(String) - Static method in class org.gbif.common.parsers.utils.ClassificationUtils: Cleans up a taxon as far as possible by removing erroneous chars etc.
cleanAuthor(String) - Static method in class org.gbif.common.parsers.utils.ClassificationUtils: Clean some noise from the author.
clear() - Method in class org.gbif.utils.collection.CompactHashSet: Removes all of the elements from this set.
ClosableIterator<T> - Interface in org.gbif.utils.file: An iterator that needs to be explicitly closed when it is not used anymore.
ClosableReportingIterator<T> - Interface in org.gbif.utils.file: Interface that extends the ClosableIterator providing a means to check if there is an error, log what it is, store the actual Exception, and skip over it to continue reading.
close() - Method in class org.gbif.utils.file.csv.CSVReader
closed(T, T) - Static method in class org.gbif.api.util.Range: Factory method.
coalesce(T...) - Static method in class org.gbif.utils.ObjectUtils: Returns the first of the given parameters that is not null.
coalesce(Iterable<T>) - Static method in class org.gbif.utils.ObjectUtils
code(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
code(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
COL_DATASET_KEY - Static variable in class org.gbif.api.model.Constants: The dataset key for the Catalogue of Life.
Collection - Class in org.gbif.api.model.collections: A group of specimens or other natural history objects.
Collection() - Constructor for class org.gbif.api.model.collections.Collection
Collection - Class in org.gbif.api.model.registry.eml: Collection data for the Dataset.
Collection() - Constructor for class org.gbif.api.model.registry.eml.Collection
Collection(String, String, String, PreservationMethodType, List<CuratorialUnitComposite>) - Constructor for class org.gbif.api.model.registry.eml.Collection
CollectionChangeSuggestion - Class in org.gbif.api.model.collections.suggestions
CollectionChangeSuggestion() - Constructor for class org.gbif.api.model.collections.suggestions.CollectionChangeSuggestion
collectionCode(String) - Method in class org.gbif.api.model.metrics.RecordError.Builder: Deprecated.
CollectionContentType - Enum in org.gbif.api.vocabulary.collections: Types of a (sub) group of elements contained in collection..
CollectionEntity - Interface in org.gbif.api.model.collections: Entity .
CollectionEntityService<T extends CollectionEntity> - Interface in org.gbif.api.service.collections
CollectionEntityType - Enum in org.gbif.api.model.collections
CollectionImportParams - Class in org.gbif.api.model.collections: Contains the parameters to create a collection from a dataset.
CollectionImportParams() - Constructor for class org.gbif.api.model.collections.CollectionImportParams
CollectionMatched - Class in org.gbif.api.model.collections.lookup
CollectionMatched() - Constructor for class org.gbif.api.model.collections.lookup.CollectionMatched
collections(CollectionSearchRequest, CollectionService, Integer) - Static method in class org.gbif.api.util.iterables.Iterables: Iterable for CollectionService.list(CollectionSearchRequest).
CollectionSearchRequest - Class in org.gbif.api.model.collections.request
CollectionSearchRequest() - Constructor for class org.gbif.api.model.collections.request.CollectionSearchRequest
CollectionSearchRequest.Builder - Class in org.gbif.api.model.collections.request
CollectionService - Interface in org.gbif.api.service.collections: API Service to work with collections.
CollectionsPager - Class in org.gbif.api.util.iterables: Iterates over results of CollectionService.list(CollectionSearchRequest).
CollectionsPager(CollectionService, CollectionSearchRequest, int) - Constructor for class org.gbif.api.util.iterables.CollectionsPager
CollectionsSearchResponse - Class in org.gbif.api.model.collections.search: Models the response for the Collections search.
CollectionsSearchResponse() - Constructor for class org.gbif.api.model.collections.search.CollectionsSearchResponse
CollectionsSearchResponse.Match - Class in org.gbif.api.model.collections.search
CollectionsSortField - Enum in org.gbif.api.vocabulary
CollectionView - Class in org.gbif.api.model.collections.view
CollectionView() - Constructor for class org.gbif.api.model.collections.view.CollectionView
CollectionView(Collection) - Constructor for class org.gbif.api.model.collections.view.CollectionView
columnsToSet(InputStream, int...) - Static method in class org.gbif.utils.file.FileUtils
columnsToSet(InputStream, Set<String>, int...) - Static method in class org.gbif.utils.file.FileUtils: Reads a file and returns a unique set of multiple columns from lines which are no comments (starting with #) and trims whitespace.
Comment - Class in org.gbif.api.model.registry
Comment() - Constructor for class org.gbif.api.model.registry.Comment
Commentable - Interface in org.gbif.api.model.registry: Generic comment interface for entities.
CommentService - Interface in org.gbif.api.service.registry: Service provides a set of operations on Comment.
CommonParameters - Class in org.gbif.api.documentation
CommonParameters() - Constructor for class org.gbif.api.documentation.CommonParameters
CommonParameters.HighlightParameter - Annotation Type in org.gbif.api.documentation: The usual (search) limit and offset parameters
CommonParameters.QParameter - Annotation Type in org.gbif.api.documentation: A normal full-text search parameter.
CompactHashSet<T> - Class in org.gbif.utils.collection: A HashSet implementation taken from Ontopia which is both faster and more compact than java.util.HashSet
INTERNAL: Implements the Set interface more compactly than java.util.HashSet by using a closed hashtable.
CompactHashSet() - Constructor for class org.gbif.utils.collection.CompactHashSet: Constructs a new, empty set.
CompactHashSet(Collection) - Constructor for class org.gbif.utils.collection.CompactHashSet: Constructs a new set containing the elements in the specified collection.
CompactHashSet(int) - Constructor for class org.gbif.utils.collection.CompactHashSet: Constructs a new, empty set.
compare(Endpoint, Endpoint) - Method in class org.gbif.api.util.comparators.EndpointCreatedComparator
compare(Endpoint, Endpoint) - Method in class org.gbif.api.util.comparators.EndpointPriorityComparator
compare(String, String) - Method in class org.gbif.utils.text.LineComparator
compare(String, String) - Method in class org.gbif.utils.text.StringComparator
compare(String, String) - Method in class org.gbif.utils.text.StringLengthComparator
compareTo(DistanceUnit.Distance) - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.Distance
COMPLETE_LOCAL_DATE_RESOLUTION - Static variable in class org.gbif.common.parsers.date.AtomizedLocalDate
CompoundPredicate - Class in org.gbif.api.model.predicate: A compound predicate is a Predicate that itself contains other Predicates.
CompressionUtil - Class in org.gbif.utils.file
CompressionUtil.UnsupportedCompressionType - Exception in org.gbif.utils.file
computeCompleteName() - Method in class org.gbif.api.model.registry.Contact: Compute and returns the complete name in the form: FirstName LastName.
ConfirmationKeyParameter - Class in org.gbif.api.model.registry: Confirmation key is a UUID used to confirm an entity.
ConfirmationKeyParameter() - Constructor for class org.gbif.api.model.registry.ConfirmationKeyParameter
ConfirmationKeyParameter(UUID) - Constructor for class org.gbif.api.model.registry.ConfirmationKeyParameter
confirmEndorsement(UUID, UUID) - Method in interface org.gbif.api.service.registry.OrganizationService: Confirm the endorsement of a new Organization by providing a confirmationKey.
confirmEndorsement(UUID) - Method in interface org.gbif.api.service.registry.OrganizationService: Confirm the endorsement of a new Organization without a confirmationKey.
ConjunctionPredicate - Class in org.gbif.api.model.predicate: This predicate is "AND"-ing its subpredicates together.
ConjunctionPredicate(Collection<Predicate>) - Constructor for class org.gbif.api.model.predicate.ConjunctionPredicate
Constants - Class in org.gbif.api.model: Common variables used by API.
constituentDatasets(UUID, DatasetService) - Static method in class org.gbif.api.util.iterables.Iterables
Contact - Class in org.gbif.api.model.collections: Contact associated to a GRSciColl Collection or Institution.
Contact() - Constructor for class org.gbif.api.model.collections.Contact
Contact - Class in org.gbif.api.model.registry
Contact() - Constructor for class org.gbif.api.model.registry.Contact
Contactable - Interface in org.gbif.api.model.collections: Entity that can have a list of contacts and addresses.
Contactable - Interface in org.gbif.api.model.registry: Generic contact interface for entities.
ContactAdapter - Class in org.gbif.api.util: Adapt the Dataset Contact list for what metadata documents generally want.
ContactAdapter(List<Contact>) - Constructor for class org.gbif.api.util.ContactAdapter
ContactService - Interface in org.gbif.api.service.collections: API Service for the contacts in the collections service.
ContactService - Interface in org.gbif.api.service.registry: Service provides a set of operations on Contact.
ContactType - Enum in org.gbif.api.vocabulary: Enumeration for all contact types.
contains(T) - Method in class org.gbif.api.util.Range: Returns true if value is within the bounds of this range.
contains(String) - Static method in class org.gbif.common.parsers.utils.BlacklistedNames
contains(Object) - Method in class org.gbif.utils.collection.CompactHashSet: Returns true if this set contains the specified element.
containsCollectionParams() - Method in class org.gbif.api.model.collections.lookup.LookupParams
containsDiscardedPart() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearDayOfYear: The NormalizedYearDayOfYEar contains at least one discarded part.
containsDiscardedPart() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearMonthDay: The NormalizedYearMonthDay contains at least one discarded part.
containsDiscardedTokens() - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateTokens: Checks if some DateToken were discarded during the tokenization.
containsInstitutionParams() - Method in class org.gbif.api.model.collections.lookup.LookupParams
content(T) - Method in class org.gbif.api.model.common.messaging.Request.Builder
content(T) - Method in class org.gbif.api.model.common.messaging.Response.Builder
contentTypes(List<CollectionContentType>) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
context(Map<String, String>) - Method in class org.gbif.api.model.common.messaging.Request.Builder
contextParam(Map.Entry<String, String>) - Method in class org.gbif.api.model.common.messaging.Request.Builder
contextParam(String, String) - Method in class org.gbif.api.model.common.messaging.Request.Builder
Continent - Enum in org.gbif.api.vocabulary: Enumeration for all continents based on the 7 continent model found on Wikipedia and the World Geographical Scheme for Recording Plant Distributions (WGSRPD).
ContinentParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/continents.txt.
convert(double, DistanceUnit, DistanceUnit) - Static method in enum org.gbif.api.model.occurrence.geo.DistanceUnit: Converts the given distance from the given DistanceUnit, to the given DistanceUnit
convertToCollection(UUID, UUID) - Method in interface org.gbif.api.service.collections.InstitutionService: Converts an institution into a collection.
ConvertToCollectionParams - Class in org.gbif.api.model.collections.merge
ConvertToCollectionParams() - Constructor for class org.gbif.api.model.collections.merge.ConvertToCollectionParams
CoordinateParseUtils - Class in org.gbif.common.parsers.geospatial: Utilities for assisting in the parsing of latitude and longitude strings into Decimals.
copy(File, String, boolean, String...) - Static method in class org.gbif.utils.file.ResourcesUtil: Copies classpath resources to real files.
copyLinneanClassification(LinneanClassification, LinneanClassification) - Static method in class org.gbif.api.util.ClassificationUtils: Copies all linnean classification based higher taxon names from one instance to another.
copyLinneanClassificationKeys(LinneanClassificationKeys, LinneanClassificationKeys) - Static method in class org.gbif.api.util.ClassificationUtils: Copies all linnean classification based higher taxon keys from one instance to another.
copyPagingValues(Pageable) - Method in class org.gbif.api.model.common.paging.PageableBase: Utility method to copy paging values.
copyStreams(InputStream, OutputStream) - Static method in class org.gbif.utils.file.FileUtils
copyStreamToFile(InputStream, File) - Static method in class org.gbif.utils.file.FileUtils
copyTo(Response<?>) - Method in class org.gbif.api.model.common.messaging.Response
Count() - Constructor for class org.gbif.api.model.common.search.Facet.Count: Null/empty constructor.
Count(String, Long) - Constructor for class org.gbif.api.model.common.search.Facet.Count: Full constructor.
count(Set<Download.Status>, String) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Counts downloads based on the given parameters.
countByUser(String, Set<Download.Status>, LocalDateTime) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Counts the downloads created by a user.
countriesForPublishingCountry(Country) - Method in interface org.gbif.api.service.occurrence.OccurrenceCountryIndexService: Lists all countries occurrences are falling into that have been published by a given country.
country(List<Country>) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
country(List<Country>) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
COUNTRY - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
Country - Enum in org.gbif.api.vocabulary: An enumeration for all current ISO 3166-1 Alpha-2 and Alpha-3 country codes.
Country.IsoDeserializer - Class in org.gbif.api.vocabulary: Deserializes the value from a 2-letter ISO format.
Country.IsoSerializer - Class in org.gbif.api.vocabulary: Serializes the value in a 2-letter ISO format.
Country.TitleDeserializer - Class in org.gbif.api.vocabulary: Deserializes the value from an English country title exactly as given by the enumeration.
Country.TitleSerializer - Class in org.gbif.api.vocabulary: Serializes the value as the English country title.
CountryOccurrenceDownloadUsage - Class in org.gbif.api.model.registry: Represents the information about the usage of one country in an occurrence download.
CountryOccurrenceDownloadUsage() - Constructor for class org.gbif.api.model.registry.CountryOccurrenceDownloadUsage
CountryParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/countryName.txt.
CountryUsageSortField - Enum in org.gbif.api.vocabulary: Fields to sort by the country usages in an occurrence download.
crawlContext(String) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
CrawlJob - Class in org.gbif.api.model.crawler: This class represents a job to be worked on by a crawler.
CrawlJob(UUID, EndpointType, URI, int, Map<String, String>) - Constructor for class org.gbif.api.model.crawler.CrawlJob: Creates a new crawl job.
CrawlJob(UUID, Integer, EndpointType, URI) - Constructor for class org.gbif.api.model.crawler.CrawlJob: Constructor with mandatory fields.
crawlJob(CrawlJob) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
create(T) - Method in interface org.gbif.api.service.collections.CrudService: Creates a new entity.
create(W) - Method in interface org.gbif.api.service.common.CrudService: Persists a new entity.
create(DownloadRequest, String) - Method in interface org.gbif.api.service.occurrence.DownloadRequestService: Creates a download request.
create(T) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Creates a new entity.
create(Download) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Persists the occurrence download object.
create(List<DateComponentOrdering>) - Static method in class org.gbif.common.parsers.date.MultiinputTemporalParser
create() - Static method in class org.gbif.common.parsers.date.MultiinputTemporalParser
createChangeSuggestion(R) - Method in interface org.gbif.api.service.collections.ChangeSuggestionService
createDatasetProcessStatus(DatasetProcessStatus) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService: Persists the DatasetProcessStatus object.
createFromDataset(UUID, String) - Method in interface org.gbif.api.service.collections.CollectionService: Creates a Collection from a Dataset.
createFromOrganization(UUID, String) - Method in interface org.gbif.api.service.collections.InstitutionService: Creates a Institution from a Organization.
createMetasync(MetasyncHistory) - Method in interface org.gbif.api.service.registry.MetasyncHistoryService: Persists the MetasyncHistory object.
createParentDirs(File) - Static method in class org.gbif.utils.file.FileUtils: Creates any necessary but nonexistent parent directories of the specified file.
createPipelineProcess(PipelineProcessParameters) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Creates/persists a pipelines process of dataset for an attempt identifier.
createTempDir() - Static method in class org.gbif.utils.file.FileUtils
createTempDir(String, String) - Static method in class org.gbif.utils.file.FileUtils
createUsages(String, Map<UUID, Long>) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Persists usages of datasets in an occurrence download.
CrudService<T extends CollectionEntity> - Interface in org.gbif.api.service.collections: Base CRUD service for CollectionEntity entities.
CrudService<T,W,K> - Interface in org.gbif.api.service.common: A generic CRUD service interface for any writable entity.
CSVMetadata() - Constructor for class org.gbif.utils.file.csv.CSVReaderFactory.CSVMetadata
CSVReader - Class in org.gbif.utils.file.csv
CSVReader(File, String, String, Character, Integer) - Constructor for class org.gbif.utils.file.csv.CSVReader
CSVReader(InputStream, String, String, Character, Integer) - Constructor for class org.gbif.utils.file.csv.CSVReader
CSVReader(InputStream, String, String, Character, Integer, int) - Constructor for class org.gbif.utils.file.csv.CSVReader
CSVReaderFactory - Class in org.gbif.utils.file.csv
CSVReaderFactory() - Constructor for class org.gbif.utils.file.csv.CSVReaderFactory
CSVReaderFactory.CSVMetadata - Class in org.gbif.utils.file.csv: Data about the CSV file
CubeService - Interface in org.gbif.api.service.metrics: The cube API service, for reading addressable counts from a basic cube.
CuratorialUnit - Class in org.gbif.api.model.registry.eml.curatorial: The base class of all curatorial units.
CuratorialUnitComposite - Class in org.gbif.api.model.registry.eml.curatorial: Composite class, combining fields from CuratorialUnitCount and CuratorialUnitRange for simpler parsing of curatorial units, since both count and range types share the same root element.
CuratorialUnitComposite() - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
CuratorialUnitComposite(int, int, int, int, String) - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
CuratorialUnitCount - Class in org.gbif.api.model.registry.eml.curatorial: Used for acuratorial unit count with uncertainty.
CuratorialUnitCount() - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
CuratorialUnitCount(CuratorialUnitType, String, int, int) - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
CuratorialUnitRange - Class in org.gbif.api.model.registry.eml.curatorial: Used to indicate that the curatorial unit falls within a range of values.
CuratorialUnitRange() - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
CuratorialUnitRange(CuratorialUnitType, String, int, int) - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
CuratorialUnitType - Enum in org.gbif.api.model.registry.eml.curatorial: Allows for typed units.
currLineNumber() - Method in class org.gbif.utils.file.csv.CSVReader
CUSTOM_CODES - Static variable in enum org.gbif.api.vocabulary.Country: A set of all 2- and 3-letter codes that are reserved by ISO for custom application specific usages.
CustomizedTextDateParser - Class in org.gbif.common.parsers.date: Wrap a set of DateTimeFormatters to parse method.
CustomizedTextDateParser() - Constructor for class org.gbif.common.parsers.date.CustomizedTextDateParser

D

DataDescription - Class in org.gbif.api.model.registry.eml: Describes the format of externally available data on a URL.
DataDescription() - Constructor for class org.gbif.api.model.registry.eml.DataDescription
DataDescription(String, String, URI, String, String) - Constructor for class org.gbif.api.model.registry.eml.DataDescription
Dataset - Class in org.gbif.api.model.registry: A GBIF dataset which provides occurrence data, checklist data, sampling event data or metadata.
Dataset() - Constructor for class org.gbif.api.model.registry.Dataset
DATASET_KEY - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
DatasetConstituentPager - Class in org.gbif.api.util.iterables: Iterates over all dataset constituents of a given super dataset.
DatasetConstituentPager(DatasetService, UUID, int) - Constructor for class org.gbif.api.util.iterables.DatasetConstituentPager
datasetKey(UUID) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
DatasetKey - Class in org.gbif.api.util: A typed dataset key for both registered and external datasets.
DatasetKey(UUID) - Constructor for class org.gbif.api.util.DatasetKey: Constructor for a registered dataset key.
DatasetKey(UUID, String) - Constructor for class org.gbif.api.util.DatasetKey: Constructor for an external dataset key.
DatasetMetrics - Class in org.gbif.api.model.checklistbank: Simple metrics about a single, processed checklist dataset in time.
DatasetMetrics() - Constructor for class org.gbif.api.model.checklistbank.DatasetMetrics
DatasetMetricsService - Interface in org.gbif.api.service.checklistbank
DatasetMixin - Interface in org.gbif.api.ws.mixin
DatasetOccurrenceDownloadUsage - Class in org.gbif.api.model.registry: Represents the information about the usage of one dataset in an occurrence download.
DatasetOccurrenceDownloadUsage() - Constructor for class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
datasetOccurrenceDownloadUsages(OccurrenceDownloadService, String, Integer) - Static method in class org.gbif.api.util.iterables.Iterables: Iterable for OccurrenceDownloadService.listDatasetUsages(String, Pageable).
DatasetOccurrenceDownloadUsageService - Interface in org.gbif.api.service.registry: Interface to access and persists information about occurrence download events.
DatasetOccurrenceDownloadUsagesPager - Class in org.gbif.api.util.iterables: Iterates over results of OccurrenceDownloadService.listDatasetUsages(String, Pageable).
DatasetOccurrenceDownloadUsagesPager(OccurrenceDownloadService, String, int) - Constructor for class org.gbif.api.util.iterables.DatasetOccurrenceDownloadUsagesPager
DatasetPager - Class in org.gbif.api.util.iterables: Pages through all datasets filtering by type only.
DatasetPager(DatasetService, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.DatasetPager
DatasetProcessService - Interface in org.gbif.api.service.crawler: This service exposes information regarding current crawling process and is not intended to provide historical information.
DatasetProcessStatus - Class in org.gbif.api.model.crawler: Information about a dataset that is currently being processed.
DatasetProcessStatus() - Constructor for class org.gbif.api.model.crawler.DatasetProcessStatus
DatasetProcessStatus(DatasetProcessStatus.Builder) - Constructor for class org.gbif.api.model.crawler.DatasetProcessStatus: Builds a new object from the builder validating it in the process.
DatasetProcessStatus.Builder - Class in org.gbif.api.model.crawler
DatasetProcessStatusService - Interface in org.gbif.api.service.registry: Interface to access and persist information about dataset processing statuses.
DatasetRequestSearchParams - Class in org.gbif.api.model.registry.search: Parameters to list datasets.
DatasetRequestSearchParams() - Constructor for class org.gbif.api.model.registry.search.DatasetRequestSearchParams
datasets(UUID, DatasetType, DatasetService, OrganizationService, InstallationService, NetworkService, NodeService) - Static method in class org.gbif.api.util.iterables.Iterables
datasets(UUID, DatasetType, DatasetService, OrganizationService, InstallationService, NetworkService, NodeService, int) - Static method in class org.gbif.api.util.iterables.Iterables: Returns a dataset iterable by testing the given registry key first to see whether it is a dataset, organization or installation.
datasets(DatasetType, DatasetService) - Static method in class org.gbif.api.util.iterables.Iterables
DatasetSearchParameter - Enum in org.gbif.api.model.registry.search: Each value in the enum represents a possible facet for the Dataset search.
DatasetSearchRequest - Class in org.gbif.api.model.registry.search: A dataset specific search request with convenience methods to add facet filters.
DatasetSearchRequest() - Constructor for class org.gbif.api.model.registry.search.DatasetSearchRequest
DatasetSearchRequest(Pageable) - Constructor for class org.gbif.api.model.registry.search.DatasetSearchRequest
DatasetSearchRequest(long, int) - Constructor for class org.gbif.api.model.registry.search.DatasetSearchRequest
DatasetSearchResult - Class in org.gbif.api.model.registry.search: The dataset search model object for faceted and full text search.
DatasetSearchResult() - Constructor for class org.gbif.api.model.registry.search.DatasetSearchResult
datasetSearchResults(DatasetSearchRequest, DatasetSearchService, Integer) - Static method in class org.gbif.api.util.iterables.Iterables: Iterates over dataset search results.
DatasetSearchResultsPager - Class in org.gbif.api.util.iterables: Pages through all datasets search results.
DatasetSearchResultsPager(DatasetSearchService, DatasetSearchRequest, int) - Constructor for class org.gbif.api.util.iterables.DatasetSearchResultsPager
DatasetSearchService - Interface in org.gbif.api.service.registry: Interface that provides search and suggest operations over Datasets.
DatasetService - Interface in org.gbif.api.service.registry
datasetsIterable(Function<PagingRequest, PagingResponse<Dataset>>) - Static method in class org.gbif.api.util.iterables.Iterables
DatasetSubtype - Enum in org.gbif.api.vocabulary: Enumeration for all possible dataset subtypes.
DatasetSuggestRequest - Class in org.gbif.api.model.registry.search: A dataset specific suggest request.
DatasetSuggestRequest() - Constructor for class org.gbif.api.model.registry.search.DatasetSuggestRequest
DatasetSuggestResult - Class in org.gbif.api.model.registry.search: The dataset search model object for suggest searches of datasets.
DatasetSuggestResult() - Constructor for class org.gbif.api.model.registry.search.DatasetSuggestResult
DatasetType - Enum in org.gbif.api.vocabulary: Enumeration for all possible dataset types.
DatasetUsageSortField - Enum in org.gbif.api.vocabulary: Fields to sort by the dataset usages in an occurrence download.
DateComponentOrdering - Enum in org.gbif.common.parsers.date: Date component orderings are given to the parser to help to select the right set of DateTimeFormatters
DateParsers - Class in org.gbif.common.parsers.date: Factories for date parsing related instances.
DateParsers() - Constructor for class org.gbif.common.parsers.date.DateParsers
DatePartsNormalizer - Class in org.gbif.common.parsers.date: DatePartsNormalizer contract is to take String representing Year, Month and Day and return the corresponding Integer as DatePartsNormalizer.NormalizedYearMonthDay if possible.
DatePartsNormalizer.NormalizedYearDayOfYear - Class in org.gbif.common.parsers.date: Hold result of the normalization process.
DatePartsNormalizer.NormalizedYearMonthDay - Class in org.gbif.common.parsers.date: Hold result of the normalization process.
DateRange - Class in org.gbif.api.model.registry.eml.temporal: A period of time.
DateRange() - Constructor for class org.gbif.api.model.registry.eml.temporal.DateRange
DateRange(Date, Date) - Constructor for class org.gbif.api.model.registry.eml.temporal.DateRange
DateSerde - Class in org.gbif.api.jackson: Jackson JsonSerializer classes for Dates with specified formats.
DateSerde() - Constructor for class org.gbif.api.jackson.DateSerde
DateSerde.FlexibleDateJsonDeserializer - Class in org.gbif.api.jackson: Jackson JsonDeserializer for Dates formatted above, falling back to the Jackson way.
DateSerde.NoTimezoneDateJsonSerializer - Class in org.gbif.api.jackson: Jackson JsonSerializer for Date.
DateTimeMultiParser - Class in org.gbif.common.parsers.date: Supports multiple DateTimeParser that are considered ambiguous.
DateTimeMultiParser.MultipleParseResult - Class in org.gbif.common.parsers.date: Nested class representing the result of a multi-parse.
DateTimeParser - Class in org.gbif.common.parsers.date: Adds some flexibility around DateTimeFormatter with the DateTimeSeparatorNormalizer and simple optimization the support of DateComponentOrdering.
DateTimeParserBuilder - Class in org.gbif.common.parsers.date: The DateTimeParserBuilder can build objects directly (build(..) methods) or return an instance of itself to create more complex object.
DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder - Class in org.gbif.common.parsers.date: More specific builder Builder used to build a DateTimeMultiParser.
DateTimeParserBuilder.ThreeTenDateParserListBuilder - Class in org.gbif.common.parsers.date: Builder used to build a List of DateTimeParser.
DateTokens() - Constructor for class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateTokens
DatumParser - Class in org.gbif.common.parsers.geospatial: Parser for geodetic datum strings into EPSG integer codes.
dDiscarded() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearDayOfYear
dDiscarded() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearMonthDay
declaredCount(Long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
decodeUtf8Garbage(String) - Static method in class org.gbif.utils.text.StringUtils: Tries to decode a UTF8 string only if common UTF8 character combinations are found which are unlikely to be correctly encoded text.
decompose(String) - Static method in class org.gbif.api.util.UnicodeUtils: Replaces all digraphs and ligatures with their underlying 2 latin letters.
decompressFile(File) - Static method in class org.gbif.utils.file.CompressionUtil: Tries to decompress a file into a newly created temporary directory, trying gzip or zip regardless of the filename or its suffix.
decompressFile(File, File) - Static method in class org.gbif.utils.file.CompressionUtil: Defaults keeping subDirectories to false.
decompressFile(File, File, boolean) - Static method in class org.gbif.utils.file.CompressionUtil: Tries to decompress a file using TAR+gzip, TAR or Zip regardless of the filename or its suffix.
DEFAULT - Static variable in enum org.gbif.api.model.occurrence.geo.DistanceUnit
DEFAULT_PARAM_LIMIT - Static variable in class org.gbif.api.model.common.paging.PagingConstants: Default number of records to return.
DEFAULT_PARAM_OFFSET - Static variable in class org.gbif.api.model.common.paging.PagingConstants: Default start index in a result list of elements.
DEFAULT_SUGGEST_LIMIT - Static variable in class org.gbif.api.model.common.search.SearchConstants: Default limit value for auto-suggest services.
defaultNumericalDateParser() - Static method in class org.gbif.common.parsers.date.DateParsers: Get a new instance of the default implementation of TemporalParser that handles numerical dates.
defaultTemporalParser() - Static method in class org.gbif.common.parsers.date.DateParsers: Return a pre-configured TemporalParser instance.
delete(UUID) - Method in interface org.gbif.api.service.collections.CrudService: Deletes an entity by key.
delete(K) - Method in interface org.gbif.api.service.common.CrudService: Deletes the entity.
delete(UUID) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Deletes an entity by the provided key.
deleteComment(UUID, int) - Method in interface org.gbif.api.service.registry.CommentService: Delete an existing Comment from a target entity by comment key.
deleteContact(UUID, int) - Method in interface org.gbif.api.service.registry.ContactService: Delete an existing Contact from a target entity by contact key.
deleteDirectoryRecursively(File) - Static method in class org.gbif.utils.file.FileUtils: Delete directory recursively, including all its files, sub-folders, and sub-folder's files.
deleteEndpoint(UUID, int) - Method in interface org.gbif.api.service.registry.EndpointService: Delete an existing Endpoint from a target entity by endpoint key.
deleteIdentifier(UUID, int) - Method in interface org.gbif.api.service.registry.IdentifierService: Delete an existing Identifier from a target entity by identifier key.
deleteMachineTag(UUID, int) - Method in interface org.gbif.api.service.registry.MachineTagService: Delete an existing MachineTag from a tagged entity by tag key.
deleteMachineTags(UUID, TagNamespace) - Method in interface org.gbif.api.service.registry.MachineTagService: Delete machine tags from a tagged entity by tag namespace.
deleteMachineTags(UUID, String) - Method in interface org.gbif.api.service.registry.MachineTagService: Delete machine tags from a tagged entity by tag namespace.
deleteMachineTags(UUID, TagName) - Method in interface org.gbif.api.service.registry.MachineTagService: Delete machine tags from a tagged entity by tag name.
deleteMachineTags(UUID, String, String) - Method in interface org.gbif.api.service.registry.MachineTagService: Delete machine tags from a tagged entity by namespace and tag name.
deleteMasterSourceMetadata(UUID) - Method in interface org.gbif.api.service.collections.CollectionEntityService: Removes the MasterSourceMetadata from an entity.
deleteMetadata(int) - Method in interface org.gbif.api.service.registry.DatasetService: Removes a metadata entry and its document by its key.
deleteOccurrenceMapping(UUID, int) - Method in interface org.gbif.api.service.collections.OccurrenceMappingService: Delete an existing OccurrenceMapping from a target entity by OccurrenceMapping key.
deleteTag(UUID, int) - Method in interface org.gbif.api.service.registry.TagService: Delete an existing Tag from a tagged entity by tag key.
deleteWhitespace(String) - Static method in class org.gbif.utils.text.StringUtils: Removes all whitespace characters from the String.
delimiter - Variable in class org.gbif.utils.file.csv.CSVReader
DelimiterUtils - Class in org.gbif.common.parsers.utils: Contains methods which can delimit raw string into raw array, example: "10-10-2010" to {"10", "10", "2010"} and etc.
DelimiterUtils() - Constructor for class org.gbif.common.parsers.utils.DelimiterUtils
Description - Class in org.gbif.api.model.checklistbank: Description Model Object represents a taxon description.
Description() - Constructor for class org.gbif.api.model.checklistbank.Description
DescriptionService - Interface in org.gbif.api.service.checklistbank: Service interface for Description Interface methods.
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.BasisOfRecordSerde.BasisOfRecordJsonDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.DateSerde.FlexibleDateJsonDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.DownloadRequestSerde
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.EmptyToNullUriDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.ExtensionDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.IsoDateIntervalSerde.IsoDateIntervalDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.LicenseSerde.LicenseJsonDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.LocalDateTimeSerDe.LocalDateTimeDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.MapEntrySerde.MapEntryJsonDeserializer: Deprecated.
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.RankSerde.RankJsonDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.TermMapListDeserializer: Deprecated.
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.model.common.DOI.DoiDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.vocabulary.Country.IsoDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.vocabulary.Country.TitleDeserializer
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.vocabulary.Language.LenientDeserializer
deserializeKey(String, DeserializationContext) - Method in class org.gbif.api.jackson.ExtensionKeyDeserializer
deserializeKey(String, DeserializationContext) - Method in class org.gbif.api.vocabulary.Language.LenientKeyDeserializer
detectEncoding(File) - Static method in class org.gbif.utils.file.CharsetDetection
detectEncoding(File, int) - Static method in class org.gbif.utils.file.CharsetDetection
detectEncoding() - Method in class org.gbif.utils.file.CharsetDetection: Guess the encoding of the provided buffer.
detectType(MediaObject) - Method in class org.gbif.common.parsers.MediaParser
Diagnostics() - Constructor for class org.gbif.api.v2.NameUsageMatch2.Diagnostics
DictionaryBackedParser<V> - Class in org.gbif.common.parsers.core: A simple parser that will initialise with source data, and will use that as a lookup to replace values.
DictionaryBackedParser(boolean) - Constructor for class org.gbif.common.parsers.core.DictionaryBackedParser
dictionaryUrl(String) - Static method in class org.gbif.utils.rs.RsGbifOrg
Dimension<T> - Class in org.gbif.api.model.metrics.cube: A typed dimension to a cube, which is constructed with a unique key.
Dimension(String, Class<T>) - Constructor for class org.gbif.api.model.metrics.cube.Dimension: Force the provision of the key in construction, which should be unique for the cube.
Dimension() - Constructor for class org.gbif.api.model.metrics.cube.Dimension: Prefer use of the constructor taking the parameters over this method.
DIMENSIONS - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
DirectExecutor - Class in org.gbif.utils.concurrent: Executor that runs tasks syncroneously and immediately.
DirectExecutor() - Constructor for class org.gbif.utils.concurrent.DirectExecutor
discardChangeSuggestion(int) - Method in interface org.gbif.api.service.collections.ChangeSuggestionService
Discipline - Enum in org.gbif.api.vocabulary.collections: Academic or research discipline to which an institution is dedicated.
disciplines(List<Discipline>) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
DisjunctionPredicate - Class in org.gbif.api.model.predicate: This predicate is "OR"-ing its subpredicates together.
DisjunctionPredicate(Collection<Predicate>) - Constructor for class org.gbif.api.model.predicate.DisjunctionPredicate
displayOnNHCPortal(boolean) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
displayOnNHCPortal(boolean) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
Distance(double, DistanceUnit) - Constructor for class org.gbif.api.model.occurrence.geo.DistanceUnit.Distance
DistanceUnit - Enum in org.gbif.api.model.occurrence.geo: The DistanceUnit enumerates several units for measuring distances.
DistanceUnit.Distance - Class in org.gbif.api.model.occurrence.geo
DistanceUnit.GeoDistance - Class in org.gbif.api.model.occurrence.geo
Distribution - Class in org.gbif.api.model.checklistbank: Distribution Model Object represents a species distribution.
Distribution() - Constructor for class org.gbif.api.model.checklistbank.Distribution
DistributionService - Interface in org.gbif.api.service.checklistbank: Service interface for Distribution Interface methods.
DistributionStatus - Enum in org.gbif.api.vocabulary: A statement about the presence or absence of a Taxon at a Location.
DistributionStatusParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/distribution_status.tsv.
DMY_FORMATS - Static variable in enum org.gbif.common.parsers.date.DateComponentOrdering: Day-Month-Year formats
DOI - Class in org.gbif.api.model.common: Class representing a single Digital Object Identifier (DOI) breaking it down to a prefix and suffix.
DOI() - Constructor for class org.gbif.api.model.common.DOI: Do not use this constructor.
DOI(String) - Constructor for class org.gbif.api.model.common.DOI: Parses a simple DOI string of various forms incl URN, URL or plain DOI names.
DOI(String, String) - Constructor for class org.gbif.api.model.common.DOI: Parses a simple DOI string of various forms incl URN, URL or plain DOI names.
DOI.DoiDeserializer - Class in org.gbif.api.model.common
DOI.DoiSerializer - Class in org.gbif.api.model.common
DoiData - Class in org.gbif.api.model.common: Data about a DOI with a target URI and a status enumeration.
DoiData(DoiStatus, URI) - Constructor for class org.gbif.api.model.common.DoiData
DoiData(String, URI) - Constructor for class org.gbif.api.model.common.DoiData
DoiData(DoiStatus) - Constructor for class org.gbif.api.model.common.DoiData
DoiDeserializer() - Constructor for class org.gbif.api.model.common.DOI.DoiDeserializer
DoiSerializer() - Constructor for class org.gbif.api.model.common.DOI.DoiSerializer
DoiStatus - Enum in org.gbif.api.model.common: This enumeration represents the status of a DOI identifier.
DOMAIN - Static variable in class org.gbif.utils.rs.RsGbifOrg
DoubleAccuracy - Class in org.gbif.common.parsers.geospatial: Simple container class for double based values with an accuracy (e.g.
DoubleAccuracy(Double, Double) - Constructor for class org.gbif.common.parsers.geospatial.DoubleAccuracy
Download - Class in org.gbif.api.model.occurrence
Download() - Constructor for class org.gbif.api.model.occurrence.Download
Download.Status - Enum in org.gbif.api.model.occurrence: Reflects the possibles statuses of a download during its execution.
DownloadFormat - Enum in org.gbif.api.model.occurrence: Download output requested format.
DownloadLauncherService - Interface in org.gbif.api.service.occurrence
DownloadRequest - Class in org.gbif.api.model.occurrence: Represents a request to download occurrence records.
DownloadRequest() - Constructor for class org.gbif.api.model.occurrence.DownloadRequest: Default constructor.
DownloadRequest(String, Collection<String>, Boolean, DownloadFormat, DownloadType, Set<Extension>) - Constructor for class org.gbif.api.model.occurrence.DownloadRequest
DownloadRequestSerde - Class in org.gbif.api.jackson: Download request deserializer.
DownloadRequestSerde() - Constructor for class org.gbif.api.jackson.DownloadRequestSerde
DownloadRequestService - Interface in org.gbif.api.service.occurrence: Provides services to manage download requests and retrieve the download file.
DownloadStatisticPager - Class in org.gbif.api.util.iterables: Iterates over results of OccurrenceDownloadService.getDownloadStatistics(Date, Date, Country, UUID, UUID, Pageable).
DownloadStatisticPager(OccurrenceDownloadService, Date, Date, Country, UUID, UUID, int) - Constructor for class org.gbif.api.util.iterables.DownloadStatisticPager
DownloadStatistics - Class in org.gbif.api.model.occurrence: Monthly dataset download statistics.
DownloadStatistics() - Constructor for class org.gbif.api.model.occurrence.DownloadStatistics
DownloadStatistics(UUID, Long, Long, LocalDate) - Constructor for class org.gbif.api.model.occurrence.DownloadStatistics
downloadStatistics(OccurrenceDownloadService, Date, Date, Country, UUID, UUID, Integer) - Static method in class org.gbif.api.util.iterables.Iterables: Iterable for OccurrenceDownloadService.getDownloadStatistics(Date, Date, Country, UUID, UUID, Pageable).
DownloadType - Enum in org.gbif.api.model.occurrence: Defines the type of citable data download.
dump() - Method in class org.gbif.utils.collection.CompactHashSet: INTERNAL: Used for debugging only.
Duplicate - Class in org.gbif.api.model.collections.duplicates: Models a duplicate in GRSciColl.
Duplicate() - Constructor for class org.gbif.api.model.collections.duplicates.Duplicate
DuplicatesRequest - Class in org.gbif.api.model.collections.duplicates: Request to be used for the GRSciColl API duplicates services.
DuplicatesRequest() - Constructor for class org.gbif.api.model.collections.duplicates.DuplicatesRequest
DuplicatesResult - Class in org.gbif.api.model.collections.duplicates: Result to be used for the GRSciColl API duplicates services.
DuplicatesResult() - Constructor for class org.gbif.api.model.collections.duplicates.DuplicatesResult
DWC_RANKS - Static variable in enum org.gbif.api.vocabulary.Rank: An ordered list of all ranks that appear in Darwin Core with their own term.
DwcaValidationReport - Class in org.gbif.api.model.crawler: A report of the validity of a DwC-A.
DwcaValidationReport(UUID, OccurrenceValidationReport, GenericValidationReport, String) - Constructor for class org.gbif.api.model.crawler.DwcaValidationReport
DwcaValidationReport(UUID, OccurrenceValidationReport) - Constructor for class org.gbif.api.model.crawler.DwcaValidationReport
DwcaValidationReport(UUID, GenericValidationReport) - Constructor for class org.gbif.api.model.crawler.DwcaValidationReport
DwcaValidationReport(UUID, String) - Constructor for class org.gbif.api.model.crawler.DwcaValidationReport

E

earliestDate(String) - Method in enum org.gbif.api.util.IsoDateParsingUtils.IsoDateFormat: Returns the earliest date of a possible closed range, e.g.
EBIRD_DATASET_KEY - Static variable in class org.gbif.api.model.Constants: The dataset key for the EOD - eBird Observation Dataset.
Edge(T) - Constructor for class org.gbif.api.model.pipelines.PipelinesWorkflow.Graph.Edge
email - Variable in class org.gbif.utils.text.EmailUtils.EmailWithName
EmailConstraintValidator - Class in org.gbif.api.util.validators.email: ConstraintValidator that validates emails.
EmailConstraintValidator() - Constructor for class org.gbif.api.util.validators.email.EmailConstraintValidator
EmailUtils - Class in org.gbif.utils.text
EmailUtils.EmailWithName - Class in org.gbif.utils.text
EmailWithName() - Constructor for class org.gbif.utils.text.EmailUtils.EmailWithName
emptyLowerCase(String) - Static method in class org.gbif.utils.text.StringUtils: Returns an empty string or the trimmed lower case version of any input, but never NULL.
EmptyToNull - Annotation Type in org.gbif.api.annotation: Indicates that the field is suitable to convert empty strings into null.
EmptyToNullUriDeserializer - Class in org.gbif.api.jackson
EmptyToNullUriDeserializer() - Constructor for class org.gbif.api.jackson.EmptyToNullUriDeserializer
encloses(Range<T>) - Method in class org.gbif.api.util.Range: Returns true if the bounds of other do not extend outside the bounds of this range.
encoding - Variable in class org.gbif.utils.file.csv.CSVReader
ENDORSED_BY_PARAM - Static variable in class org.gbif.api.model.registry.search.InstallationRequestSearchParams
endorsedDatasets(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NodeService: Provides paging service to list datasets published, i.e.
endorsedDatasets(UUID, DatasetType, NodeService) - Static method in class org.gbif.api.util.iterables.Iterables
endorsedOrganizations(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NodeService: Provides access to the organizations endorsed by a single node.
endorsedOrganizations(UUID, NodeService) - Static method in class org.gbif.api.util.iterables.Iterables
EndorsementStatus - Enum in org.gbif.api.model.registry
Endpoint - Class in org.gbif.api.model.registry
Endpoint() - Constructor for class org.gbif.api.model.registry.Endpoint
Endpointable - Interface in org.gbif.api.model.registry: Generic endpoint interface for entities.
EndpointCreatedComparator - Class in org.gbif.api.util.comparators: An ordering that uses the created date of an endpoint for ordering.
EndpointPriorityComparator - Class in org.gbif.api.util.comparators: Compares two Endpoints.
EndpointPriorityComparator() - Constructor for class org.gbif.api.util.comparators.EndpointPriorityComparator
EndpointService - Interface in org.gbif.api.service.registry: Service provides a set of operations on Endpoint.
EndpointType - Enum in org.gbif.api.vocabulary: Enumeration for all endpoint types.
EntityMatched - Interface in org.gbif.api.model.collections.lookup
EntityWithLogoMixin - Interface in org.gbif.api.ws.mixin
EnumParser<T extends Enum<T>> - Class in org.gbif.common.parsers.core: Generic parser for enumerations making use of our vocabulary util to lookup an enum value from a string.
equals(Object) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
equals(Object) - Method in class org.gbif.api.model.checklistbank.Description
equals(Object) - Method in class org.gbif.api.model.checklistbank.Distribution
equals(Object) - Method in class org.gbif.api.model.checklistbank.NameUsage
equals(Object) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
equals(Object) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
equals(Object) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
equals(Object) - Method in class org.gbif.api.model.checklistbank.ParsedName
equals(Object) - Method in class org.gbif.api.model.checklistbank.Reference
equals(Object) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
equals(Object) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
equals(Object) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
equals(Object) - Method in class org.gbif.api.model.checklistbank.TableOfContents
equals(Object) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
equals(Object) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
equals(Object) - Method in class org.gbif.api.model.checklistbank.VernacularName
equals(Object) - Method in class org.gbif.api.model.collections.Address
equals(Object) - Method in class org.gbif.api.model.collections.AlternativeCode
equals(Object) - Method in class org.gbif.api.model.collections.CollectionImportParams
equals(Object) - Method in class org.gbif.api.model.collections.Contact
equals(Object) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
equals(Object) - Method in class org.gbif.api.model.collections.InstitutionImportParams
equals(Object) - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
equals(Object) - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
equals(Object) - Method in class org.gbif.api.model.collections.lookup.LookupParams
equals(Object) - Method in class org.gbif.api.model.collections.lookup.Match
equals(Object) - Method in class org.gbif.api.model.collections.MasterSourceMetadata
equals(Object) - Method in class org.gbif.api.model.collections.OccurrenceMapping
equals(Object) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
equals(Object) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse.Match
equals(Object) - Method in class org.gbif.api.model.collections.SourceableField
equals(Object) - Method in class org.gbif.api.model.collections.SourceableField.Source
equals(Object) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
equals(Object) - Method in class org.gbif.api.model.collections.suggestions.Change
equals(Object) - Method in class org.gbif.api.model.collections.suggestions.InstitutionChangeSuggestion
equals(Object) - Method in class org.gbif.api.model.collections.UserId
equals(Object) - Method in class org.gbif.api.model.common.AbstractGbifUser
equals(Object) - Method in class org.gbif.api.model.common.DOI
equals(Object) - Method in class org.gbif.api.model.common.DoiData
equals(Object) - Method in class org.gbif.api.model.common.GbifUser
equals(Object) - Method in class org.gbif.api.model.common.Identifier
equals(Object) - Method in class org.gbif.api.model.common.InterpretedField: Deprecated.
equals(Object) - Method in class org.gbif.api.model.common.MediaObject
equals(Object) - Method in class org.gbif.api.model.common.paging.PageableBase
equals(Object) - Method in class org.gbif.api.model.common.paging.PagingResponse
equals(Object) - Method in class org.gbif.api.model.common.search.Facet.Count
equals(Object) - Method in class org.gbif.api.model.common.search.Facet
equals(Object) - Method in class org.gbif.api.model.common.search.SearchResponse
equals(Object) - Method in class org.gbif.api.model.common.search.SpellCheckResponse
equals(Object) - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
equals(Object) - Method in class org.gbif.api.model.common.User: Deprecated.
equals(Object) - Method in class org.gbif.api.model.crawler.CrawlJob
equals(Object) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
equals(Object) - Method in class org.gbif.api.model.crawler.DwcaValidationReport
equals(Object) - Method in class org.gbif.api.model.crawler.GenericValidationReport
equals(Object) - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
equals(Object) - Method in class org.gbif.api.model.metrics.cube.Dimension
equals(Object) - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
equals(Object) - Method in class org.gbif.api.model.occurrence.AgentIdentifier
equals(Object) - Method in class org.gbif.api.model.occurrence.DownloadRequest
equals(Object) - Method in class org.gbif.api.model.occurrence.DownloadStatistics
equals(Object) - Method in class org.gbif.api.model.occurrence.Gadm
equals(Object) - Method in class org.gbif.api.model.occurrence.GadmFeature
equals(Object) - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.Distance
equals(Object) - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
equals(Object) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
equals(Object) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
equals(Object) - Method in class org.gbif.api.model.occurrence.PredicateDownloadRequest
equals(Object) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
equals(Object) - Method in class org.gbif.api.model.pipelines.IngestionProcess
equals(Object) - Method in class org.gbif.api.model.pipelines.PipelineExecution
equals(Object) - Method in class org.gbif.api.model.pipelines.PipelineProcess
equals(Object) - Method in class org.gbif.api.model.pipelines.PipelineStep
equals(Object) - Method in class org.gbif.api.model.pipelines.PipelineStep.MetricInfo
equals(Object) - Method in class org.gbif.api.model.pipelines.RunPipelineResponse
equals(Object) - Method in class org.gbif.api.model.pipelines.WorkflowStep
equals(Object) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
equals(Object) - Method in class org.gbif.api.model.predicate.CompoundPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.ConjunctionPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.DisjunctionPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.EqualsPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.FullTextSearchPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.GeoDistancePredicate
equals(Object) - Method in class org.gbif.api.model.predicate.GreaterThanOrEqualsPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.GreaterThanPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.InPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.IsNotNullPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.IsNullPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.NotPredicate
equals(Object) - Method in class org.gbif.api.model.predicate.SimplePredicate
equals(Object) - Method in class org.gbif.api.model.predicate.WithinPredicate
equals(Object) - Method in class org.gbif.api.model.registry.Citation
equals(Object) - Method in class org.gbif.api.model.registry.CitationContact
equals(Object) - Method in class org.gbif.api.model.registry.Comment
equals(Object) - Method in class org.gbif.api.model.registry.Contact
equals(Object) - Method in class org.gbif.api.model.registry.Dataset
equals(Object) - Method in class org.gbif.api.model.registry.eml.Collection
equals(Object) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
equals(Object) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
equals(Object) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
equals(Object) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
equals(Object) - Method in class org.gbif.api.model.registry.eml.DataDescription
equals(Object) - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
equals(Object) - Method in class org.gbif.api.model.registry.eml.KeywordCollection
equals(Object) - Method in class org.gbif.api.model.registry.eml.Project
equals(Object) - Method in class org.gbif.api.model.registry.eml.SamplingDescription
equals(Object) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
equals(Object) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
equals(Object) - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
equals(Object) - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
equals(Object) - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
equals(Object) - Method in class org.gbif.api.model.registry.Endpoint
equals(Object) - Method in class org.gbif.api.model.registry.Grid
equals(Object) - Method in class org.gbif.api.model.registry.Identifier
equals(Object) - Method in class org.gbif.api.model.registry.Installation
equals(Object) - Method in class org.gbif.api.model.registry.MachineTag
equals(Object) - Method in class org.gbif.api.model.registry.Metadata
equals(Object) - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
equals(Object) - Method in class org.gbif.api.model.registry.Network
equals(Object) - Method in class org.gbif.api.model.registry.Node
equals(Object) - Method in class org.gbif.api.model.registry.Organization
equals(Object) - Method in class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
equals(Object) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
equals(Object) - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
equals(Object) - Method in class org.gbif.api.model.registry.search.KeyTitleResult
equals(Object) - Method in class org.gbif.api.model.registry.Tag
equals(Object) - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
equals(Object) - Method in class org.gbif.api.v2.NameUsageMatch2
equals(Object) - Method in class org.gbif.api.v2.NameUsageMatch2.Nomenclature
equals(Object) - Method in class org.gbif.api.v2.RankedName
equals(Object) - Method in class org.gbif.common.parsers.core.KeyValue
equals(Object) - Method in class org.gbif.common.parsers.date.AtomizedLocalDate
equals(Object) - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
equals(Object) - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateToken
equals(Object) - Method in class org.gbif.common.parsers.geospatial.DoubleAccuracy
equals(Object) - Method in class org.gbif.common.parsers.geospatial.LatLng
equals(Object) - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
EqualsPredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate: This predicate checks if its key is equal to its value.
EqualsPredicate(S, String, Boolean) - Constructor for class org.gbif.api.model.predicate.EqualsPredicate
error() - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
error(Throwable) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
error() - Static method in class org.gbif.common.parsers.core.ParseResult
error(Throwable) - Static method in class org.gbif.common.parsers.core.ParseResult
errorType(ProcessingErrorType) - Method in class org.gbif.api.model.metrics.RecordError.Builder: Deprecated.
escapeFilename(String) - Static method in class org.gbif.utils.file.FileUtils: Escapes a filename so it is a valid filename on all systems, replacing /.
EstablishmentMeans - Enum in org.gbif.api.vocabulary: Deprecated.
EstablishmentMeansParser - Class in org.gbif.common.parsers: Deprecated.
replaced by the vocabulary server https://github.com/gbif/vocabulary.
Event - Class in org.gbif.api.model.event: Event class based on https://dwc.tdwg.org/terms/#event.
Event() - Constructor for class org.gbif.api.model.event.Event
Event.ParentLineage - Class in org.gbif.api.model.event
Event.VocabularyConcept - Class in org.gbif.api.model.event
exact(T, Match.Reason...) - Static method in class org.gbif.api.model.collections.lookup.Match
exact(T, Set<Match.Reason>) - Static method in class org.gbif.api.model.collections.lookup.Match
execute(Runnable) - Method in class org.gbif.utils.concurrent.DirectExecutor
EXECUTING_STATUSES - Static variable in enum org.gbif.api.model.occurrence.Download.Status: Statuses that represent a download that that hasn't finished.
ExecutorUtils - Class in org.gbif.utils.concurrent
ExecutorUtils() - Constructor for class org.gbif.utils.concurrent.ExecutorUtils
exists(UUID) - Method in interface org.gbif.api.service.collections.CrudService: Checks if there is an entity with the key received.
Experimental - Annotation Type in org.gbif.api.annotation: Experimental features are available but are not as robustly supported as other features.
explicitMapping(T, Match.Reason...) - Static method in class org.gbif.api.model.collections.lookup.Match
explicitMapping(T, Set<Match.Reason>) - Static method in class org.gbif.api.model.collections.lookup.Match
ExportFormat - Enum in org.gbif.api.model.common.export: Supported export formats.
ExtendedPrincipal - Interface in org.gbif.api.model.common: Simply an extension of Principal to add the possibility to check roles.
Extension - Enum in org.gbif.api.vocabulary: Enumeration of dwc extensions for both Occurrence and Taxon that are indexed by GBIF.
ExtensionDeserializer - Class in org.gbif.api.jackson
ExtensionDeserializer() - Constructor for class org.gbif.api.jackson.ExtensionDeserializer
ExtensionKeyDeserializer - Class in org.gbif.api.jackson: Deserializer for Extension in key values.
ExtensionKeyDeserializer() - Constructor for class org.gbif.api.jackson.ExtensionKeyDeserializer
ExtensionKeySerializer - Class in org.gbif.api.jackson
ExtensionKeySerializer() - Constructor for class org.gbif.api.jackson.ExtensionKeySerializer
ExtensionSerializer - Class in org.gbif.api.jackson
ExtensionSerializer() - Constructor for class org.gbif.api.jackson.ExtensionSerializer
extractCsvMetadata(File, String) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory: Replaced by TabularFileMetadataExtractor Extract metadata from a CSV file.
extractTabularFileMetadata(Path) - Static method in class org.gbif.utils.file.tabular.TabularFileMetadataExtractor: Extract metadata from a tabular file using a sample (defined by TabularFileMetadataExtractor.MAX_SAMPLE_SIZE) of the file.

F

Facet<T extends SearchParameter> - Class in org.gbif.api.model.common.search: Represents a clustering of search results into categories.
Facet() - Constructor for class org.gbif.api.model.common.search.Facet: Null/Empty constructor.
Facet(T) - Constructor for class org.gbif.api.model.common.search.Facet: Minimal constructor.
Facet(T, List<Facet.Count>) - Constructor for class org.gbif.api.model.common.search.Facet: Full constructor.
Facet.Count - Class in org.gbif.api.model.common.search: Nested class that represents the count of each category.
FacetedSearchRequest - Class in org.gbif.api.model.common.search: Generic request class for search operations requesting facets.
FacetedSearchRequest() - Constructor for class org.gbif.api.model.common.search.FacetedSearchRequest
FacetedSearchRequest(Pageable) - Constructor for class org.gbif.api.model.common.search.FacetedSearchRequest
FacetedSearchRequest(SearchRequest) - Constructor for class org.gbif.api.model.common.search.FacetedSearchRequest
FacetedSearchRequest(long, int) - Constructor for class org.gbif.api.model.common.search.FacetedSearchRequest
FacetedSearchRequest.FacetParameters - Annotation Type in org.gbif.api.model.common.search: Annotation to document the facet query parameters.
fail() - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
fail(OccurrenceIssue) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
fail(OccurrenceIssue...) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
fail(Collection<OccurrenceIssue>) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
fail(T, Collection<OccurrenceIssue>) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult: This creates a ParseResult indicating a parse failure but it also has a payload.
fail(T, OccurrenceIssue...) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
fail(T, OccurrenceIssue) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult: This creates a ParseResult indicating a parse failure but it also has a payload.
fail() - Static method in class org.gbif.common.parsers.core.ParseResult
FileBasedDictionaryParser<T> - Class in org.gbif.common.parsers.core: A very simple Dictionary backed by a tab delimited file.
FileBasedDictionaryParser(boolean) - Constructor for class org.gbif.common.parsers.core.FileBasedDictionaryParser
FILENAME_AUTHORS - Static variable in class org.gbif.utils.rs.RsGbifOrg
FILENAME_BLACKLIST - Static variable in class org.gbif.utils.rs.RsGbifOrg
FILENAME_EPITHETA - Static variable in class org.gbif.utils.rs.RsGbifOrg
FILENAME_EPITHETA_AMIGOUS - Static variable in class org.gbif.utils.rs.RsGbifOrg
FILENAME_GENERA - Static variable in class org.gbif.utils.rs.RsGbifOrg
FILENAME_GENERA_AMIGOUS - Static variable in class org.gbif.utils.rs.RsGbifOrg
FILENAME_SUPRAGENERIC - Static variable in class org.gbif.utils.rs.RsGbifOrg
FileSplitter - Class in org.gbif.utils.file: A utility to split files into chucks.
FileUtils - Class in org.gbif.utils.file: Collection of file utils.
FileUtils() - Constructor for class org.gbif.utils.file.FileUtils
filter(List<T>, String, String, String) - Static method in class org.gbif.api.util.MachineTagUtils: Returns a copy of the original list of machine taggable entities, that have the machine tag.
filterProperties(Properties, String) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Filters and translates Properties with a prefix.
findByMasterSource(Source, String) - Method in interface org.gbif.api.service.collections.CollectionEntityService: Finds the collection entity whose master data metadata matches with the parameters received.
FINISH_STATUSES - Static variable in enum org.gbif.api.model.occurrence.Download.Status: Statuses that represent a download that that has finished.
finishedCrawling(Date) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
finishReason(FinishReason) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
FinishReason - Enum in org.gbif.api.model.crawler: This enum lists the reasons why a crawl is finished.
firstTag(MachineTaggable, TagName) - Static method in class org.gbif.api.util.MachineTagUtils
firstTag(MachineTaggable, String, String) - Static method in class org.gbif.api.util.MachineTagUtils
firstTag(MachineTaggable, TagName, Function<MachineTag, T>) - Static method in class org.gbif.api.util.MachineTagUtils
firstTag(MachineTaggable, String, String, Function<MachineTag, T>) - Static method in class org.gbif.api.util.MachineTagUtils
FlexibleDateJsonDeserializer() - Constructor for class org.gbif.api.jackson.DateSerde.FlexibleDateJsonDeserializer
foldToAscii(String) - Static method in class org.gbif.utils.text.StringUtils: Removes accents & diacretics and converts ligatures into several chars
format(DateRange) - Method in interface org.gbif.api.util.formatter.TemporalCoverageFormatterVisitor
format(SingleDate) - Method in interface org.gbif.api.util.formatter.TemporalCoverageFormatterVisitor
format(VerbatimTimePeriod) - Method in interface org.gbif.api.util.formatter.TemporalCoverageFormatterVisitor
FORMAT_PATTERN - Static variable in class org.gbif.api.util.validators.identifierschemes.ResearcherIdValidator
formatContactName(Contact) - Static method in class org.gbif.api.util.ContactAdapter: Format the name of the contact as "FirstName LastName".
formats - Variable in class org.gbif.common.parsers.date.DateTimeMultiParser.MultipleParseResult
fragmentsEmitted(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
fragmentsProcessed(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
fragmentsReceived(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
fromCoreTerm(DwcTerm) - Static method in enum org.gbif.api.model.occurrence.DownloadType
fromDouble(Double, boolean) - Static method in class org.gbif.utils.number.BigDecimalUtils: Convert a double to a BigDecimal.
fromGbif(Rank) - Static method in class org.gbif.nameparser.NameParserGbifV1
fromIsoCode(String) - Static method in enum org.gbif.api.vocabulary.Country
fromIsoCode(String) - Static method in enum org.gbif.api.vocabulary.Language
fromLicenseUrl(String) - Static method in enum org.gbif.api.vocabulary.License: Lookup a License by either its a) legal code URL or b) human readable summary URL, with HTTP or HTTPS.
fromOccurrence(Occurrence) - Static method in class org.gbif.api.model.event.Event
fromResponse(Response<?>) - Method in class org.gbif.api.model.common.messaging.Response.Builder: Creates an builder using/copying a response object.
fromRowType(String) - Static method in enum org.gbif.api.vocabulary.Extension
fromString(String) - Static method in enum org.gbif.api.model.common.DoiStatus
fromString(String) - Static method in class org.gbif.api.util.DatasetKey: Parses a datasetKey which can be either a compound external key or a simple UUID for registered datasets.
fromString(String) - Static method in class org.gbif.api.util.IsoDateInterval: Parses a well-formatted IsoDateInterval from the text representation.
fromString(String, String) - Static method in class org.gbif.api.util.IsoDateInterval: Parses a well-formatted IsoDateInterval from the text representation.
fromString(String) - Static method in enum org.gbif.api.vocabulary.ContactType
fromString(String) - Static method in enum org.gbif.api.vocabulary.Continent
fromString(String) - Static method in enum org.gbif.api.vocabulary.DatasetSubtype
fromString(String) - Static method in enum org.gbif.api.vocabulary.DatasetType
fromString(String) - Static method in enum org.gbif.api.vocabulary.EndpointType
fromString(String) - Static method in enum org.gbif.api.vocabulary.GbifRegion
fromString(String) - Static method in enum org.gbif.api.vocabulary.IdentifierType
fromString(String) - Static method in enum org.gbif.api.vocabulary.InstallationType
fromString(String) - Static method in enum org.gbif.api.vocabulary.License: Get an License from its name as String.
fromString(String) - Static method in enum org.gbif.api.vocabulary.MaintenanceUpdateFrequency
fromString(String) - Static method in enum org.gbif.api.vocabulary.MetadataType
fromString(String) - Static method in enum org.gbif.api.vocabulary.NamePart: Case insensitive lookup of a NamePart by its name that does not throw an exception but returns null for a not found NamePart.
fromString(String) - Static method in enum org.gbif.api.vocabulary.NameType: Case insensitive lookup of a name type by its name that does not throw an exception but returns null for not found name types.
fromString(String) - Static method in enum org.gbif.api.vocabulary.NodeType
fromString(String) - Static method in enum org.gbif.api.vocabulary.NomenclaturalStatus: Deprecated.
use NomStatusParser instead
fromString(String) - Static method in enum org.gbif.api.vocabulary.Origin: Case-insensitive lookup of an Origin by its name that does not throw an exception but returns null for not found origins.
fromString(String) - Static method in enum org.gbif.api.vocabulary.ParticipationStatus
fromTemporalAccessor(TemporalAccessor) - Static method in class org.gbif.common.parsers.date.AtomizedLocalDate: Build a new instance of AtomizedLocalDate based on a TemporalAccessor.
fromTemporalAccessor(TemporalAccessor) - Static method in class org.gbif.common.parsers.date.AtomizedLocalDateTime: Build a new instance of AtomizedLocalDateTime based on a TemporalAccessor.
fullName() - Method in class org.gbif.api.model.checklistbank.ParsedName
FullTextSearchPredicate - Class in org.gbif.api.model.predicate: This predicate checks performs a full text search based on a query parameter.
FullTextSearchPredicate(String) - Constructor for class org.gbif.api.model.predicate.FullTextSearchPredicate
fuzzy(T, Match.Reason...) - Static method in class org.gbif.api.model.collections.lookup.Match
fuzzy(T, Set<Match.Reason>) - Static method in class org.gbif.api.model.collections.lookup.Match
fuzzyName(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
fuzzyName(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder

G

Gadm - Class in org.gbif.api.model.occurrence: GADM level.
Gadm() - Constructor for class org.gbif.api.model.occurrence.Gadm
GadmFeature - Class in org.gbif.api.model.occurrence: A GADM region feature.
GadmFeature() - Constructor for class org.gbif.api.model.occurrence.GadmFeature
GadmFeature(String, String) - Constructor for class org.gbif.api.model.occurrence.GadmFeature
GadmFeature(String) - Constructor for class org.gbif.api.model.occurrence.GadmFeature
GBIF_PREFIX - Static variable in class org.gbif.api.model.common.DOI: The DOI prefix registered with DataCite to be used by GBIF-issued production DOIs.
gbifNameType(ParsedName) - Static method in class org.gbif.nameparser.NameParserGbifV1
gbifRegion(List<GbifRegion>) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
gbifRegion(List<GbifRegion>) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
GbifRegion - Enum in org.gbif.api.vocabulary: An enumeration for all GBIF Regions.
GbifUser - Class in org.gbif.api.model.common: A GBIF user account registered in the user Identity database (previously Drupal).
GbifUser() - Constructor for class org.gbif.api.model.common.GbifUser
GbifUser(GbifUser) - Constructor for class org.gbif.api.model.common.GbifUser
GbifUserPrincipal - Class in org.gbif.api.model.common: A wrapper class for a GBIF User that exposes the unique account name as the principal name.
GbifUserPrincipal(GbifUser) - Constructor for class org.gbif.api.model.common.GbifUserPrincipal
generateAuthorsName(List<CitationContact>) - Static method in class org.gbif.api.util.CitationGenerator: Given a list of authors, generates a List of String representing the authors name.
generateCitation(Dataset, Organization) - Static method in class org.gbif.api.util.CitationGenerator
generateCitation(Dataset, String) - Static method in class org.gbif.api.util.CitationGenerator: Generate a citation for a Dataset and its Organization.
Generated - Annotation Type in org.gbif.api.annotation: Annotation that marks a method as a 'generated' one.
generatePublisherProvidedCitation(Dataset) - Static method in class org.gbif.api.util.CitationGenerator: Generate a citation for a Dataset using the publisher's provided citation.
GenericValidationReport - Class in org.gbif.api.model.crawler: A container class used to capture the information necessary for a generic validation report.
GenericValidationReport(int, boolean, List<String>, List<Integer>) - Constructor for class org.gbif.api.model.crawler.GenericValidationReport
GEO_DATUM - Static variable in class org.gbif.api.model.event.Event
GEO_DATUM - Static variable in class org.gbif.api.model.occurrence.Occurrence
GeoDistance(double, double, DistanceUnit.Distance) - Constructor for class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
GeoDistancePredicate - Class in org.gbif.api.model.predicate: This predicate checks if an occurrence location falls within a distance of a location.
GeoDistancePredicate(String, String, String) - Constructor for class org.gbif.api.model.predicate.GeoDistancePredicate: Builds a new geodistance predicate that matches records within a given distance of a geopoint..
GeoDistancePredicate(DistanceUnit.GeoDistance) - Constructor for class org.gbif.api.model.predicate.GeoDistancePredicate
Geometry - Interface in org.gbif.api.model.registry.eml.geospatial: General interface for all geometries such as polygons or bounding boxes.
GEOSPATIAL_RULES - Static variable in enum org.gbif.api.vocabulary.OccurrenceIssue: All issues that indicate problems with the coordinates and thus should not be shown on maps.
GeospatialCoverage - Class in org.gbif.api.model.registry.eml.geospatial
GeospatialCoverage() - Constructor for class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
GeospatialCoverage(String, BoundingBox) - Constructor for class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
get(UUID) - Method in interface org.gbif.api.service.checklistbank.DatasetMetricsService
get(int) - Method in interface org.gbif.api.service.checklistbank.DescriptionService: Retrieve a description by its key.
get(int, Locale) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Attempt to find a name usage matching the passed key.
get(int) - Method in interface org.gbif.api.service.checklistbank.ParsedNameService: Retrieves a parsed name by its name key.
get(int) - Method in interface org.gbif.api.service.collections.BatchService: Returns a Batch by its key.
get(UUID) - Method in interface org.gbif.api.service.collections.CrudService: Retrieves an entity by its key.
get(K) - Method in interface org.gbif.api.service.common.CrudService: Get an entity by its unique key.
get(String) - Method in interface org.gbif.api.service.common.IdentityAccessService: Get a GbifUser by identifier (username or email).
get(String) - Method in interface org.gbif.api.service.common.UserService: Deprecated.

Retrieves a user by its case insensitive username.
get(ReadBuilder) - Method in interface org.gbif.api.service.metrics.CubeService: Using the supplied ReadBuilder to obtain the address, looks up the cube value.
get(Long) - Method in interface org.gbif.api.service.occurrence.OccurrenceService: Attempt to find an occurrence matching the passed key.
get(UUID, String) - Method in interface org.gbif.api.service.occurrence.OccurrenceService: Attempt to find an occurrence matching the passed dataset key and occurrenceId.
get(UUID) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Gets an entity by the provided key.
get(String) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves a occurrence download by its unique key or DOI.
getAbbreviatedLabel() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus: The abbreviated status name, often used in botany.
getAbbreviatedName() - Method in class org.gbif.api.model.registry.CitationContact: Abbreviated name used for the citation.
getAbbreviation() - Method in class org.gbif.api.model.registry.Dataset: TODO: Document what this is TODO: are both alias & abbreviation needed?
getAbbreviation() - Method in class org.gbif.api.model.registry.Node
getAbbreviation() - Method in class org.gbif.api.model.registry.Organization
getAbstract() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getAbstract() - Method in class org.gbif.api.model.registry.eml.Project
getAccepted() - Method in class org.gbif.api.model.checklistbank.NameUsage
getAccepted() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getAcceptedKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getAcceptedKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getAcceptedScientificName() - Method in class org.gbif.api.model.occurrence.Occurrence: The accepted scientific name for the acceptedTaxonKey from the GBIF backbone.
getAcceptedTaxonKey() - Method in class org.gbif.api.model.occurrence.Occurrence: The accepted taxon key from the GBIF backbone.
getAcceptedUsage() - Method in class org.gbif.api.v2.NameUsageMatch2
getAcceptedUsageKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch: The key of the accepted name usage in case the matched usage was a synonym.
getAccessionStatus() - Method in class org.gbif.api.model.collections.Collection: Defines how a collection as been added or joined.
getAccessionStatus() - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
getAccordingTo() - Method in class org.gbif.api.model.checklistbank.NameUsage: The taxon concept reference is usually a reference to some publication or author and year.
getAccordingTo() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getAccordingTo() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
getAccuracy() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
getAccuracy() - Method in class org.gbif.common.parsers.geospatial.DoubleAccuracy
getAcronym() - Method in enum org.gbif.api.vocabulary.NomenclaturalCode
getActive() - Method in class org.gbif.api.model.collections.request.SearchRequest
getAdded() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getAdditionalInfo() - Method in class org.gbif.api.model.registry.Dataset
getAdditionalNames() - Method in class org.gbif.api.model.collections.Institution: Alternative names of institution.
getAddress() - Method in class org.gbif.api.model.collections.Address: Textual direction of this address.
getAddress() - Method in class org.gbif.api.model.collections.Collection: Address where this collection is situated.
getAddress() - Method in class org.gbif.api.model.collections.Contact
getAddress() - Method in interface org.gbif.api.model.collections.Contactable: Physical or associated address.
getAddress() - Method in class org.gbif.api.model.collections.Institution
getAddress() - Method in interface org.gbif.api.model.registry.Address: deliveryPoint in EML
getAddress() - Method in class org.gbif.api.model.registry.Contact
getAddress() - Method in class org.gbif.api.model.registry.Network
getAddress() - Method in class org.gbif.api.model.registry.Node
getAddress() - Method in class org.gbif.api.model.registry.Organization
getAdministrativeContact() - Method in class org.gbif.api.util.ContactAdapter: Get the AdministrativeContact Contact.
getAgeInDays() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: Maximum observed age of an organism given as number of days.
getAlias() - Method in class org.gbif.api.model.registry.Dataset: TODO: Document what this is
getAllInterpretation() - Static method in enum org.gbif.api.model.pipelines.InterpretationType.RecordType
getAllInterpretationAsString() - Static method in enum org.gbif.api.model.pipelines.InterpretationType.RecordType
getAllNodes() - Method in class org.gbif.api.model.pipelines.PipelinesWorkflow.Graph
getAllNodesFor(Set<T>) - Method in class org.gbif.api.model.pipelines.PipelinesWorkflow.Graph
getAllParsers() - Method in class org.gbif.common.parsers.date.DateTimeMultiParser: Get the list of all parsers: the preferred (if specified in the constructor) + otherParsers.
getAllSteps() - Method in class org.gbif.api.model.pipelines.WorkflowStep
getAllTables() - Static method in enum org.gbif.api.model.pipelines.InterpretationType.RecordType
getAllType(ContactType) - Method in class org.gbif.api.util.ContactAdapter: Get all Contact for the provided type.
getAllValidatorInterpretationAsString() - Static method in enum org.gbif.api.model.pipelines.InterpretationType.RecordType
getAlternativeCode() - Method in class org.gbif.api.model.collections.request.SearchRequest
getAlternativeCodes() - Method in class org.gbif.api.model.collections.Collection: Alternative codes for a collection.
getAlternativeCodes() - Method in interface org.gbif.api.model.collections.CollectionEntity: Alternative codes of the entity
getAlternativeCodes() - Method in class org.gbif.api.model.collections.Institution: Alternative codes for an institution.
getAlternativeMatches() - Method in class org.gbif.api.model.collections.lookup.LookupResult
getAlternativePayloads() - Method in class org.gbif.common.parsers.core.ParseResult
getAlternatives() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getAlternatives() - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
getAlternatives() - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
getApiUrl() - Method in class org.gbif.api.model.collections.Collection: Machine consumable endpoint of information about a collection.
getApiUrl() - Method in class org.gbif.api.model.collections.Institution: Machine-consumable endpoint of an institution and probably its collections.
getAppendixCites() - Method in class org.gbif.api.model.checklistbank.Distribution: The CITES (Convention on International Trade in Endangered Species of Wild Fauna and Flora) Appendix number under which the taxon is listed.
getApplied() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getApplied() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getAppliedBy() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getAppliedBy() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getArea() - Method in class org.gbif.api.model.checklistbank.VernacularName: The area for the vernacular name.
getAssociatedParties() - Method in class org.gbif.api.util.ContactAdapter: Get the list of AssociatedParties.
getAssociatedSequences() - Method in class org.gbif.api.model.occurrence.Occurrence: A list (concatenated and separated) of identifiers (publication, global unique identifier, URI) of genetic sequence information associated with the material entity.
getAttempt() - Method in class org.gbif.api.model.crawler.CrawlJob
getAttempt() - Method in class org.gbif.api.model.pipelines.IngestionProcess
getAttempt() - Method in class org.gbif.api.model.pipelines.PipelineProcess
getAttempt() - Method in class org.gbif.api.model.pipelines.ws.PipelineProcessParameters
getAttempt() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
getAudience() - Method in class org.gbif.api.model.common.MediaObject
getAuthor() - Method in class org.gbif.api.model.checklistbank.Reference: Deprecated.
getAuthor() - Method in class org.gbif.api.model.collections.suggestions.Change
getAuthorName(Contact) - Static method in class org.gbif.api.util.CitationGenerator: Given a Contact, generates a String for that contact for citation purpose.
getAuthors() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getAuthors(List<Contact>) - Static method in class org.gbif.api.util.CitationGenerator: Extracts an ordered list of unique authors from a list of contacts.
getAuthorship() - Method in class org.gbif.api.model.checklistbank.NameUsage: Returns the authorship information for the scientific name.
getAuthorship() - Method in class org.gbif.api.model.checklistbank.ParsedName: The original author of this name, e.g.
getAuthorship() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getBasionym() - Method in class org.gbif.api.model.checklistbank.NameUsage
getBasionym() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getBasionymKey() - Method in class org.gbif.api.model.checklistbank.NameUsage: Returns the earlier name (basionym) for this scientific name.
getBasionymKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getBasisOfRecord() - Method in class org.gbif.api.model.occurrence.Occurrence
getBasisOfRecordCounts() - Method in interface org.gbif.api.service.occurrence.OccurrenceDistributionIndexService: Returns the occurrence records count by basis of record.
getBed() - Method in class org.gbif.api.model.occurrence.Occurrence
getBibliographicCitations() - Method in class org.gbif.api.model.registry.Dataset
getBoundingBox() - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
getBoundingBoxForCells(List<Integer>) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Creates a bounding box for the list of unordered cell ids.
getBracketAuthorship() - Method in class org.gbif.api.model.checklistbank.ParsedName: The authorship of the original name, i.e.
getBracketYear() - Method in class org.gbif.api.model.checklistbank.ParsedName: The code relevant year of publication of the original name, i.e.
getBracketYearInt() - Method in class org.gbif.api.model.checklistbank.ParsedName
getByCountry(Country) - Method in interface org.gbif.api.service.registry.NodeService: Returns a node for a given country.
getBySession(String) - Method in interface org.gbif.api.service.common.UserService: Deprecated.

Retrieves a user by a currently open Drupal (login) session.
getCanonicalName() - Method in class org.gbif.api.model.checklistbank.NameUsage
getCanonicalName() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getCanonicalName() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getCanonicalName() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getCanonicalOrScientificName() - Method in class org.gbif.api.model.checklistbank.NameUsage
getCatalogNumber() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getCatalogNumber() - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
getCatalogUrl() - Method in class org.gbif.api.model.collections.Collection: URI that exposes data about the catalog associated to a collection.
getCatalogUrl() - Method in class org.gbif.api.model.collections.Institution: URL to the main catalogue of an institution.
getCellIdFor(double) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Get cell id.
getCellsEnclosedBy(double, double, double, double) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Gets the list of cells that are enclosed within the bounding box.
getCentiCellIdForBoundingBox(double, double, double, double) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Returns the cell id and centi cell id for the supplied bounding box, Returning null if the supplied bounding box doesnt enclose a single cell.
getChanges() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getChanges() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getChangeSuggestion(int) - Method in interface org.gbif.api.service.collections.ChangeSuggestionService
getCharset() - Method in class org.gbif.api.model.registry.eml.DataDescription: The name of the character encoding.
getCheckedRecords() - Method in class org.gbif.api.model.crawler.GenericValidationReport
getCheckedRecords() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
getCitation() - Method in class org.gbif.api.model.checklistbank.Reference: A text string referring to an un-parsed bibliographic citation.
getCitation() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getCitation() - Method in class org.gbif.api.model.registry.Dataset: The exact form of how to cite this dataset.
getCitation(String) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieve citation details of a download by its unique key or DOI.
getCitationType() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getCitesPermitNumber() - Method in class org.gbif.api.model.collections.Institution: CITES (see http://ec.europa.eu/environment/cites/info_permits_en.htm) licence given for this collection.
getCity() - Method in class org.gbif.api.model.collections.Address: City where this address is located.
getCity() - Method in class org.gbif.api.model.collections.Collection
getCity() - Method in class org.gbif.api.model.collections.Contact
getCity() - Method in class org.gbif.api.model.collections.Institution
getCity() - Method in class org.gbif.api.model.collections.request.SearchRequest
getCity() - Method in interface org.gbif.api.model.registry.Address: city in EML
getCity() - Method in class org.gbif.api.model.registry.Contact
getCity() - Method in class org.gbif.api.model.registry.Network
getCity() - Method in class org.gbif.api.model.registry.Node
getCity() - Method in class org.gbif.api.model.registry.Organization
getClassification() - Method in class org.gbif.api.v2.NameUsageMatch2: the classification includes the accepted taxon concept view
getClassKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getClassKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getClassKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getClassKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getClassKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys: Return the class key for this usage.
getClassKey() - Method in class org.gbif.api.model.occurrence.Occurrence
getClasspathFile(String) - Static method in class org.gbif.utils.file.FileUtils
getClazz() - Method in class org.gbif.api.model.checklistbank.NameUsage
getClazz() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getClazz() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getClazz() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getClazz() - Method in interface org.gbif.api.model.common.LinneanClassification: Return the class for this usage.
getClazz() - Method in class org.gbif.api.model.occurrence.Occurrence
getCode() - Method in class org.gbif.api.model.ChallengeCode
getCode() - Method in class org.gbif.api.model.collections.AlternativeCode
getCode() - Method in class org.gbif.api.model.collections.Collection: Collection code: identifies a collection at the owner's location.
getCode() - Method in interface org.gbif.api.model.collections.CollectionEntity: Identifies an entity at the owner's location.
getCode() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
getCode() - Method in class org.gbif.api.model.collections.Institution: Code used to identify the collection.
getCode() - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
getCode() - Method in interface org.gbif.api.model.collections.lookup.EntityMatched
getCode() - Method in class org.gbif.api.model.collections.OccurrenceMapping
getCode() - Method in class org.gbif.api.model.collections.request.SearchRequest
getCode() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getCode() - Method in enum org.gbif.api.model.common.messaging.Response.StatusCode
getCode() - Method in class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
getCode() - Method in enum org.gbif.api.vocabulary.ThreatStatus
getColCoveragePct() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getCollection() - Method in class org.gbif.api.model.collections.view.CollectionView
getCollectionCode() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getCollectionCode() - Method in class org.gbif.api.model.collections.CollectionImportParams
getCollectionCode() - Method in class org.gbif.api.model.collections.lookup.LookupParams
getCollectionCode() - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
getCollectionId() - Method in class org.gbif.api.model.collections.lookup.LookupParams
getCollectionKey() - Method in class org.gbif.api.model.occurrence.Occurrence
getCollectionMatch() - Method in class org.gbif.api.model.collections.lookup.LookupResult
getCollectionMatches() - Method in class org.gbif.api.model.collections.lookup.AlternativeMatches
getCollections() - Method in class org.gbif.api.model.registry.Dataset
getCollectionSummary() - Method in class org.gbif.api.model.collections.Collection
getCollectionView(UUID) - Method in interface org.gbif.api.service.collections.CollectionService: Retrieves a CollectionView by the collection key.
getColMatchingCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getColumnComparator() - Method in class org.gbif.utils.text.LineComparator
getCombinations() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getComments() - Method in class org.gbif.api.model.collections.Collection
getComments() - Method in class org.gbif.api.model.collections.Institution
getComments() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getComments() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getComments() - Method in interface org.gbif.api.model.registry.Commentable
getComments() - Method in class org.gbif.api.model.registry.Dataset
getComments() - Method in class org.gbif.api.model.registry.Installation
getComments() - Method in class org.gbif.api.model.registry.Network
getComments() - Method in class org.gbif.api.model.registry.Node
getComments() - Method in class org.gbif.api.model.registry.Organization
getCommonName() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
getConfidence() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch: The confidence that the lookup was correct.
getConfidence() - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
getConfidence() - Method in class org.gbif.common.parsers.core.ParseResult
getConfirmationKey() - Method in class org.gbif.api.model.registry.ConfirmationKeyParameter
getConstituentKey() - Method in class org.gbif.api.model.checklistbank.NameUsage: Return the optional sub dataset key for this usage.
getConstituentKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getContact() - Method in class org.gbif.api.model.collections.request.SearchRequest
getContactPersons() - Method in class org.gbif.api.model.collections.Collection
getContactPersons() - Method in interface org.gbif.api.model.collections.Contactable: List of associated contacts.
getContactPersons() - Method in class org.gbif.api.model.collections.Institution
getContacts() - Method in interface org.gbif.api.model.registry.Contactable
getContacts() - Method in class org.gbif.api.model.registry.Dataset
getContacts() - Method in class org.gbif.api.model.registry.eml.Project
getContacts() - Method in class org.gbif.api.model.registry.Installation
getContacts() - Method in class org.gbif.api.model.registry.Network
getContacts() - Method in class org.gbif.api.model.registry.Node
getContacts() - Method in class org.gbif.api.model.registry.Organization
getContacts() - Method in class org.gbif.api.util.ContactAdapter: Get the list of Contact of type ContactType.ADMINISTRATIVE_POINT_OF_CONTACT.
getContactsCitation() - Method in class org.gbif.api.model.registry.Dataset: A generated list of contacts used in the citation text when it is generated by the GBIF API.
getContent() - Method in class org.gbif.api.model.common.messaging.Request
getContent() - Method in class org.gbif.api.model.common.messaging.Response
getContent() - Method in class org.gbif.api.model.registry.Comment
getContent() - Method in class org.gbif.api.model.registry.Metadata
getContentTypes() - Method in class org.gbif.api.model.collections.Collection: Content type of the elements found in a collection.
getContentTypes() - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
getContext() - Method in class org.gbif.api.model.common.messaging.Request: Context contains additional request parameters.
getContinent() - Method in class org.gbif.api.model.occurrence.Occurrence
getContinent() - Method in class org.gbif.api.model.registry.Node
getContinent() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult: Currently not populated.
getContributor() - Method in class org.gbif.api.model.checklistbank.Description: An entity responsible for making contributions to the textual information provided for a description.
getContributor() - Method in class org.gbif.api.model.common.MediaObject
getConvertedToCollection() - Method in class org.gbif.api.model.collections.Institution
getCoordinateAccuracy() - Method in class org.gbif.api.model.occurrence.Occurrence: Deprecated.
to be removed in the public v2 of the API (see POR-3061) The uncertainty for latitude in decimal degrees. Note that the longitude degrees have a different accuracy in degrees which changes with latitude and is largest at the poles.
getCoordinatePrecision() - Method in class org.gbif.api.model.occurrence.Occurrence
getCoordinateUncertaintyInMeters() - Method in class org.gbif.api.model.occurrence.Occurrence: The uncertainty radius for lat/lon in meters.
getCoreField(Term) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage: Get the value of a specific field (Term).
getCoreTerm() - Method in enum org.gbif.api.model.occurrence.DownloadType
getCount() - Method in class org.gbif.api.model.common.paging.PagingResponse: Gets the count of total results of search operation.
getCount() - Method in class org.gbif.api.model.common.search.Facet.Count: Number of occurrences of the category(name).
getCount() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
getCount() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
getCountByConstituent() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getCountByIssue() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getCountByIssue(NameUsageIssue) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics: Get the metrics by name usage issue.
getCountByKingdom() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getCountByKingdom(Kingdom) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics: For an occurrence dataset get the number of records that are interpreted to belong to a certain nub kingdom.
getCountByOrigin() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getCountByOrigin(Origin) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics: Get the metrics by name usage origin.
getCountByRank() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getCountByRank(Rank) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics: Get the metrics by taxonomic rank, i.e.
getCountExtRecordsByExtension() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getCountNamesByLanguage() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getCountNamesByLanguage(Language) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics: Number of vernacular names in this checklist dataset by language.
getCountriesOfCoverage() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getCountriesOfResearcher() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getCountry() - Method in class org.gbif.api.model.checklistbank.Distribution
getCountry() - Method in class org.gbif.api.model.checklistbank.VernacularName: The country in which the vernacular name is used.
getCountry() - Method in class org.gbif.api.model.collections.Address: Country where this address is located.
getCountry() - Method in class org.gbif.api.model.collections.Collection
getCountry() - Method in class org.gbif.api.model.collections.Contact
getCountry() - Method in class org.gbif.api.model.collections.Institution
getCountry() - Method in class org.gbif.api.model.collections.lookup.LookupParams
getCountry() - Method in class org.gbif.api.model.collections.request.SearchRequest
getCountry() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getCountry() - Method in class org.gbif.api.model.occurrence.Occurrence
getCountry() - Method in interface org.gbif.api.model.registry.Address: country in EML
getCountry() - Method in class org.gbif.api.model.registry.Contact
getCountry() - Method in class org.gbif.api.model.registry.Network
getCountry() - Method in class org.gbif.api.model.registry.Node
getCountry() - Method in class org.gbif.api.model.registry.Organization
getCountryCoverage() - Method in class org.gbif.api.model.registry.Dataset
getCountryCoverage() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult: Currently not populated.
getCounts() - Method in class org.gbif.api.model.common.search.Facet: List of the different categories/count for this facet.
getCoverages() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
getCrawlContext() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus: Last successful crawl context, this is a JSON string.
getCrawlId() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: Crawling attempt id.
getCrawlInfo() - Method in class org.gbif.api.model.pipelines.IngestionProcess
getCrawlJob() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getCreated() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getCreated() - Method in class org.gbif.api.model.collections.Collection
getCreated() - Method in interface org.gbif.api.model.collections.CollectionEntity: Date when the records as created.
getCreated() - Method in class org.gbif.api.model.collections.Contact
getCreated() - Method in class org.gbif.api.model.collections.Institution
getCreated() - Method in class org.gbif.api.model.collections.MasterSourceMetadata
getCreated() - Method in class org.gbif.api.model.collections.OccurrenceMapping
getCreated() - Method in class org.gbif.api.model.collections.suggestions.Change
getCreated() - Method in class org.gbif.api.model.common.MediaObject: The date and time this media item was taken.
getCreated() - Method in class org.gbif.api.model.occurrence.Download
getCreated() - Method in class org.gbif.api.model.pipelines.PipelineExecution
getCreated() - Method in class org.gbif.api.model.pipelines.PipelineProcess
getCreated() - Method in class org.gbif.api.model.registry.Comment
getCreated() - Method in class org.gbif.api.model.registry.Contact
getCreated() - Method in class org.gbif.api.model.registry.Dataset
getCreated() - Method in class org.gbif.api.model.registry.Endpoint
getCreated() - Method in class org.gbif.api.model.registry.Identifier
getCreated() - Method in class org.gbif.api.model.registry.Installation
getCreated() - Method in class org.gbif.api.model.registry.MachineTag
getCreated() - Method in class org.gbif.api.model.registry.Metadata
getCreated() - Method in class org.gbif.api.model.registry.Network
getCreated() - Method in interface org.gbif.api.model.registry.NetworkEntity
getCreated() - Method in class org.gbif.api.model.registry.Node
getCreated() - Method in class org.gbif.api.model.registry.Organization
getCreated() - Method in class org.gbif.api.model.registry.Tag
getCreatedBy() - Method in class org.gbif.api.model.collections.Collection
getCreatedBy() - Method in interface org.gbif.api.model.collections.CollectionEntity: Creator of the database record.
getCreatedBy() - Method in class org.gbif.api.model.collections.Contact
getCreatedBy() - Method in class org.gbif.api.model.collections.Institution
getCreatedBy() - Method in class org.gbif.api.model.collections.MasterSourceMetadata
getCreatedBy() - Method in class org.gbif.api.model.collections.OccurrenceMapping
getCreatedBy() - Method in class org.gbif.api.model.pipelines.PipelineExecution
getCreatedBy() - Method in class org.gbif.api.model.pipelines.PipelineProcess
getCreatedBy() - Method in class org.gbif.api.model.pipelines.PipelineStep
getCreatedBy() - Method in class org.gbif.api.model.registry.Comment
getCreatedBy() - Method in class org.gbif.api.model.registry.Contact
getCreatedBy() - Method in class org.gbif.api.model.registry.Dataset
getCreatedBy() - Method in class org.gbif.api.model.registry.Endpoint
getCreatedBy() - Method in class org.gbif.api.model.registry.Identifier
getCreatedBy() - Method in class org.gbif.api.model.registry.Installation
getCreatedBy() - Method in class org.gbif.api.model.registry.MachineTag
getCreatedBy() - Method in class org.gbif.api.model.registry.Metadata
getCreatedBy() - Method in class org.gbif.api.model.registry.Network
getCreatedBy() - Method in interface org.gbif.api.model.registry.NetworkEntity
getCreatedBy() - Method in class org.gbif.api.model.registry.Node
getCreatedBy() - Method in class org.gbif.api.model.registry.Organization
getCreatedBy() - Method in class org.gbif.api.model.registry.Tag
getCreator() - Method in class org.gbif.api.model.checklistbank.Description: The author(s) of the textual information provided for a description.
getCreator() - Method in class org.gbif.api.model.common.MediaObject: The person that created the media item.
getCreator() - Method in class org.gbif.api.model.occurrence.DownloadRequest
getCreators() - Method in class org.gbif.api.util.ContactAdapter: Get the list of Contact of type ContactType.ORIGINATOR.
getCultivarEpithet() - Method in class org.gbif.api.model.checklistbank.ParsedName: The cultivar, cultivar group or grex part of a cultivated plant name.
getCuratorialUnits() - Method in class org.gbif.api.model.registry.Dataset
getCuratorialUnits() - Method in class org.gbif.api.model.registry.eml.Collection: The quantitative descriptor (number of specimens, samples or batches).
getData() - Method in class org.gbif.api.model.ChallengeCode
getDataDescriptions() - Method in class org.gbif.api.model.registry.Dataset
getDataLanguage() - Method in class org.gbif.api.model.registry.Dataset
getDatasetCitation() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage: Dataset citation at the moment when the download was created.
getDatasetDOI() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage: Dataset DOI at the moment when the download was created.
getDatasetID() - Method in class org.gbif.api.model.occurrence.Occurrence
getDatasetId() - Method in class org.gbif.api.util.DatasetKey
getDatasetKey() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getDatasetKey() - Method in class org.gbif.api.model.checklistbank.NameUsage: Returns the key of the checklist that "hosts" this name usage.
getDatasetKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getDatasetKey() - Method in class org.gbif.api.model.collections.CollectionImportParams
getDatasetKey() - Method in class org.gbif.api.model.collections.lookup.LookupParams
getDatasetKey() - Method in class org.gbif.api.model.collections.OccurrenceMapping
getDatasetKey() - Method in class org.gbif.api.model.crawler.CrawlJob
getDatasetKey() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus: Key that identifies the Dataset.
getDatasetKey() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
getDatasetKey() - Method in class org.gbif.api.model.occurrence.DownloadStatistics
getDatasetKey() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
getDatasetKey() - Method in class org.gbif.api.model.pipelines.IngestionProcess
getDatasetKey() - Method in class org.gbif.api.model.pipelines.PipelineProcess
getDatasetKey() - Method in class org.gbif.api.model.pipelines.ws.PipelineProcessParameters
getDatasetKey() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
getDatasetKey() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage: Dataset key.
getDatasetKey() - Method in class org.gbif.api.model.registry.Metadata
getDatasetName() - Method in class org.gbif.api.model.occurrence.Occurrence
getDatasetProcessStatus(UUID) - Method in interface org.gbif.api.service.crawler.DatasetProcessService: Returns the processing status for a particular dataset identified by a UUID key.
getDatasetProcessStatus(UUID, int) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService: Retrieves a DatasetProcessStatus by its datasetKey and attempt.
getDatasetsToExclude() - Method in class org.gbif.api.model.pipelines.ws.RunAllParams
getDatasetsToInclude() - Method in class org.gbif.api.model.pipelines.ws.RunAllParams
getDatasetTitle() - Method in class org.gbif.api.model.pipelines.IngestionProcess
getDatasetTitle() - Method in class org.gbif.api.model.pipelines.PipelineProcess
getDatasetTitle() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage: Dataset title at the moment when the download was created.
getDate() - Method in class org.gbif.api.model.checklistbank.Reference: Deprecated.
getDate() - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
getDateIdentified() - Method in class org.gbif.api.model.occurrence.Occurrence
getDateIdentified() - Method in interface org.gbif.api.ws.mixin.OccurrenceMixin
getDateSignedMOU() - Method in class org.gbif.api.model.registry.Node
getDay() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getDay() - Method in class org.gbif.api.model.occurrence.Occurrence: The day of the month of the event date.
getDay() - Method in class org.gbif.common.parsers.date.AtomizedLocalDate
getDay() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
getDay() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearMonthDay
getDayOfYear() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearDayOfYear
getDecades() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getDecimalLatitude() - Method in class org.gbif.api.model.occurrence.Occurrence
getDecimalLongitude() - Method in class org.gbif.api.model.occurrence.Occurrence: The decimalLongitude in decimal degrees always for the WGS84 datum.
getDeclaredCount() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getDefaultSystemCharset() - Static method in class org.gbif.utils.file.CharsetDetection: Retrieve the default charset of the system.
getDegreeOfEstablishment() - Method in class org.gbif.api.model.occurrence.Occurrence
getDeleted() - Method in class org.gbif.api.model.checklistbank.NameUsage: The date this record was deleted.
getDeleted() - Method in class org.gbif.api.model.collections.Collection
getDeleted() - Method in interface org.gbif.api.model.collections.CollectionEntity: Date when the records was (logically) deleted.
getDeleted() - Method in class org.gbif.api.model.collections.Institution
getDeleted() - Method in class org.gbif.api.model.common.AbstractGbifUser
getDeleted() - Method in class org.gbif.api.model.registry.Dataset
getDeleted() - Method in class org.gbif.api.model.registry.Installation
getDeleted() - Method in class org.gbif.api.model.registry.Network
getDeleted() - Method in interface org.gbif.api.model.registry.NetworkEntity
getDeleted() - Method in class org.gbif.api.model.registry.Node
getDeleted() - Method in class org.gbif.api.model.registry.Organization
getDelimiter() - Method in enum org.gbif.api.model.common.export.ExportFormat
getDelimiter() - Method in class org.gbif.utils.file.csv.CSVReaderFactory.CSVMetadata
getDelimiter() - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
getDelimiterChar(List<String>) - Static method in class org.gbif.utils.file.tabular.TabularFileMetadataExtractor: Given a sample of line, this method tries to determine the delimiter char used.
getDepartment() - Method in class org.gbif.api.model.collections.Collection
getDepth() - Method in class org.gbif.api.model.occurrence.Occurrence: Depth in meters below the surface.
getDepthAccuracy() - Method in class org.gbif.api.model.occurrence.Occurrence: Depth accuracy is the uncertainty for the depth in meters.
getDescription() - Method in class org.gbif.api.model.checklistbank.Description: Any descriptive free text matching the category given as dc:type.
getDescription() - Method in class org.gbif.api.model.collections.AlternativeCode
getDescription() - Method in class org.gbif.api.model.collections.Collection: Textual description/summary of the contents of a collection.
getDescription() - Method in interface org.gbif.api.model.collections.CollectionEntity: Textual description/summary of the contents of an entity.
getDescription() - Method in class org.gbif.api.model.collections.Institution: Textual description of institution.
getDescription() - Method in class org.gbif.api.model.common.MediaObject: A longer description for this media item.
getDescription() - Method in class org.gbif.api.model.registry.Contact
getDescription() - Method in class org.gbif.api.model.registry.Dataset
getDescription() - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
getDescription() - Method in class org.gbif.api.model.registry.eml.Project
getDescription() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
getDescription() - Method in class org.gbif.api.model.registry.Endpoint
getDescription() - Method in class org.gbif.api.model.registry.Installation
getDescription() - Method in class org.gbif.api.model.registry.Network
getDescription() - Method in interface org.gbif.api.model.registry.NetworkEntity
getDescription() - Method in class org.gbif.api.model.registry.Node
getDescription() - Method in class org.gbif.api.model.registry.Organization
getDescription() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getDescription() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
getDescription() - Method in enum org.gbif.api.vocabulary.collections.CollectionContentType
getDescription() - Method in enum org.gbif.api.vocabulary.collections.Discipline
getDescription() - Method in enum org.gbif.api.vocabulary.collections.PreservationType
getDescriptions() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getDescriptions() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getDesignDescription() - Method in class org.gbif.api.model.registry.eml.Project
getDetails() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory: Details about the metasync operation.
getDeterminedBy() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
getDeterminedDate() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
getDeviation() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
getDeviation() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
getDiagnostics() - Method in class org.gbif.api.v2.NameUsageMatch2
getDimensions() - Method in class org.gbif.api.model.metrics.cube.Rollup
getDiscarded() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getDiscarded() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getDiscardedBy() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getDiscardedBy() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getDiscardedTokens() - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateTokens
getDisciplines() - Method in class org.gbif.api.model.collections.Institution: Activities to which an institution is dedicated.
getDisciplines() - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest
getDiscovered() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getDisplayOnNHCPortal() - Method in class org.gbif.api.model.collections.Collection
getDisplayOnNHCPortal() - Method in interface org.gbif.api.model.collections.CollectionEntity: Flag to display the entity in the NHC portal.
getDisplayOnNHCPortal() - Method in class org.gbif.api.model.collections.Institution
getDisplayOnNHCPortal() - Method in class org.gbif.api.model.collections.request.SearchRequest
getDistance() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
getDistance() - Method in class org.gbif.api.model.predicate.GeoDistancePredicate
getDistanceFromCentroidInMeters() - Method in class org.gbif.api.model.occurrence.Occurrence: The distance in metres from a known centroid, e.g.
getDistinctNamesCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getDistributions() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getDivision() - Method in class org.gbif.api.model.collections.Collection
getDoi() - Method in class org.gbif.api.model.checklistbank.Reference: The pure DOI for the publication without potential http resolver or URI prefix.
getDoi() - Method in class org.gbif.api.model.collections.Collection: Digital Object Identifier assigned to this collection.
getDoi() - Method in class org.gbif.api.model.literature.search.LiteratureSearchRequest
getDoi() - Method in class org.gbif.api.model.occurrence.Download: Occurrence download Digital Object Identifier.
getDoi() - Method in class org.gbif.api.model.registry.Dataset
getDoi() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getDoiName() - Method in class org.gbif.api.model.common.DOI
getDoiString() - Method in class org.gbif.api.model.common.DOI
getDownload() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
getDownloaded() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getDownloadedRecordsByDataset(Date, Date, Country, UUID, UUID) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves downloaded records monthly stats by country (user and publishing country) and dataset.
getDownloadKey() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage: Occurrence download key.
getDownloadLink() - Method in class org.gbif.api.model.occurrence.Download
getDownloadsByDataset(Date, Date, Country, UUID, UUID) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves downloads monthly stats by country (user and publishing country) and dataset.
getDownloadsBySource(Date, Date, String) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves downloads monthly stats by source.
getDownloadsByUserCountry(Date, Date, Country) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves downloads monthly stats by country (user and publishing country) and dataset.
getDownloadStatistics(Date, Date, Country, UUID, UUID, Pageable) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves downloads monthly stats by country (user and publishing country) and dataset.
getDuplicateIds() - Method in class org.gbif.api.model.crawler.GenericValidationReport
getDuplicateOfDatasetKey() - Method in class org.gbif.api.model.registry.Dataset: If a dataset is registered with GBIF through more than one place we'll mark all but one as a duplicate by pointing it to the canonical dataset.
getDuplicates() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesResult
getEarliestAgeOrLowestStage() - Method in class org.gbif.api.model.occurrence.Occurrence
getEarliestEonOrLowestEonothem() - Method in class org.gbif.api.model.occurrence.Occurrence
getEarliestEpochOrLowestSeries() - Method in class org.gbif.api.model.occurrence.Occurrence
getEarliestEraOrLowestErathem() - Method in class org.gbif.api.model.occurrence.Occurrence
getEarliestPeriodOrLowestSystem() - Method in class org.gbif.api.model.occurrence.Occurrence
getElevation() - Method in class org.gbif.api.model.occurrence.Occurrence: Elevation in meters usually above sea level (altitude).
getElevationAccuracy() - Method in class org.gbif.api.model.occurrence.Occurrence: Elevation accuracy is the uncertainty for the elevation in meters.
getEmail() - Method in class org.gbif.api.model.collections.Collection
getEmail() - Method in interface org.gbif.api.model.collections.CollectionEntity: Emails of the entity
getEmail() - Method in class org.gbif.api.model.collections.Contact
getEmail() - Method in class org.gbif.api.model.collections.Institution
getEmail() - Method in class org.gbif.api.model.common.AbstractGbifUser
getEmail() - Method in class org.gbif.api.model.common.User: Deprecated.
getEmail() - Method in interface org.gbif.api.model.registry.Address: electronicMailAddress in EML
getEmail() - Method in class org.gbif.api.model.registry.Contact
getEmail() - Method in class org.gbif.api.model.registry.Network
getEmail() - Method in class org.gbif.api.model.registry.Node
getEmail() - Method in class org.gbif.api.model.registry.Organization
getEmptyLines() - Method in class org.gbif.utils.file.csv.CSVReader
getEncoding() - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
getEnd() - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
getEndDayOfYear() - Method in class org.gbif.api.model.checklistbank.Distribution: Seasonal temporal subcontext within the eventDate context.
getEndDayOfYear() - Method in class org.gbif.api.model.occurrence.Occurrence: The latest integer day of the year of the event.
getEndorsed() - Method in class org.gbif.api.model.registry.Organization
getEndorsementStatus() - Method in class org.gbif.api.model.registry.Organization
getEndorsingNodeKey() - Method in class org.gbif.api.model.registry.Organization
getEndorsingNodeKey() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getEndpoints() - Method in class org.gbif.api.model.registry.Dataset
getEndpoints() - Method in interface org.gbif.api.model.registry.Endpointable
getEndpoints() - Method in class org.gbif.api.model.registry.Installation
getEndpoints() - Method in class org.gbif.api.model.registry.Network
getEndpoints() - Method in class org.gbif.api.model.registry.Node
getEndpoints() - Method in class org.gbif.api.model.registry.Organization
getEndpointType() - Method in class org.gbif.api.model.crawler.CrawlJob
getEntityCountry() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getEntityCountry() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getEntityCreatedKey() - Method in class org.gbif.api.model.collections.suggestions.ApplySuggestionResult
getEntityKey() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getEntityKey() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getEntityMatched() - Method in class org.gbif.api.model.collections.lookup.Match
getEntityName() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getEntityName() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getEraseAfter() - Method in class org.gbif.api.model.occurrence.Download
getErasureNotification() - Method in class org.gbif.api.model.occurrence.Download
getError() - Method in class org.gbif.common.parsers.core.ParseResult
getErrorMessage() - Method in interface org.gbif.utils.file.ClosableReportingIterator: Return an informative message about the error encountered while iterating over row.
getErrorMessage() - Method in class org.gbif.utils.file.csv.CSVReader
getEstablishedDate() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
getEstablishmentMeans() - Method in class org.gbif.api.model.checklistbank.Distribution: Term describing whether the organism occurs natively, is introduced or cultivated.
getEstablishmentMeans() - Method in class org.gbif.api.model.occurrence.Occurrence
getEventDate() - Method in class org.gbif.api.model.occurrence.Occurrence: The date the occurrence was recorded or collected.
getEventDate() - Method in interface org.gbif.api.ws.mixin.OccurrenceMixin
getEventOccurrenceWorkflow() - Static method in class org.gbif.api.model.pipelines.PipelinesWorkflow
getEventWorkflow() - Static method in class org.gbif.api.model.pipelines.PipelinesWorkflow
getException() - Method in interface org.gbif.utils.file.ClosableReportingIterator: Return the Exception encountered while iterating over row.
getException() - Method in class org.gbif.utils.file.csv.CSVReader
getExcludeKeys() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getExecutionKey() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
getExecutions() - Method in class org.gbif.api.model.pipelines.PipelineProcess
getExtension() - Method in enum org.gbif.api.model.occurrence.DownloadFormat
getExtensionRecordCount(Extension) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics: Number of extension records found in the dataset.
getExtensions() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage: A map of extension records, holding all verbatim extension terms.
getExtensions() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: A map holding all verbatim extension terms.
getEzid() - Method in enum org.gbif.api.model.common.DoiStatus
getFacetLimit() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest: Page size of the facet request.
getFacetMinCount() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest: Min count of facet to return, if the facet count is less than this number the facet won't be included.
getFacetOffset() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest: Offset of the facet request.
getFacetPage(P) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest: Gets the paging configuration of a facet parameter.
getFacetPages() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest: Holds the paging configuration for each requested facet.
getFacets() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest: Gets the list of requested facets by the search operation.
getFacets() - Method in class org.gbif.api.model.common.search.SearchResponse: Gets the resulting facets of a search operation, the list can be empty if no facets were requested.
getFacts() - Method in class org.gbif.api.model.occurrence.Occurrence
getFamily() - Method in class org.gbif.api.model.checklistbank.NameUsage
getFamily() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getFamily() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getFamily() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getFamily() - Method in interface org.gbif.api.model.common.LinneanClassification: Return the family for this usage.
getFamily() - Method in class org.gbif.api.model.occurrence.Occurrence
getFamilyKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getFamilyKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getFamilyKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getFamilyKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getFamilyKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys: Return the family key for this usage.
getFamilyKey() - Method in class org.gbif.api.model.occurrence.Occurrence
getFax() - Method in class org.gbif.api.model.collections.Contact
getField() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse.Match
getField() - Method in class org.gbif.api.model.collections.suggestions.Change
getField() - Method in class org.gbif.api.model.common.search.Facet: The facet field, it's used only for identify the facet in a possible list of facets.
getFieldName() - Method in class org.gbif.api.model.collections.SourceableField
getFields() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage: A map holding all verbatim core terms.
getFileExtension(String) - Static method in class org.gbif.utils.file.FileUtils: Returns the file extension for the given file name, or the empty string if the file has no extension.
getFilteredContacts(ContactType...) - Method in class org.gbif.api.util.ContactAdapter: Filter contacts based on the provided contact types.
getFinished() - Method in class org.gbif.api.model.pipelines.PipelineStep
getFinishedCrawling() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus: Timestamp of when the crawl was finished.
getFinishReason() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus: The reason a crawl is finished.
getFirstDateFormatMatch(String) - Static method in class org.gbif.api.util.IsoDateParsingUtils: Iterates over all the OccurrenceDateFormat's and returns the first one that parses successfully the value.
getFirstName() - Method in class org.gbif.api.model.collections.Contact
getFirstName() - Method in class org.gbif.api.model.common.AbstractGbifUser
getFirstName() - Method in class org.gbif.api.model.common.User: Deprecated.
getFirstName() - Method in class org.gbif.api.model.registry.CitationContact: Contact's first name.
getFirstName() - Method in class org.gbif.api.model.registry.Contact
getFirstPreferredType(ContactType) - Method in class org.gbif.api.util.ContactAdapter: Get the first primary Contact for the provided type.
getFormat() - Method in class org.gbif.api.model.common.MediaObject
getFormat() - Method in class org.gbif.api.model.occurrence.DownloadRequest
getFormat() - Method in class org.gbif.api.model.registry.eml.DataDescription: The name of the format of the data object, e.g., Microsoft Excel.
getFormation() - Method in class org.gbif.api.model.occurrence.Occurrence
getFormats() - Method in class org.gbif.common.parsers.date.DateTimeMultiParser.MultipleParseResult
getFormatVersion() - Method in class org.gbif.api.model.registry.eml.DataDescription: The version of the format of the data object, e.g., 2000 (9.0.2720).
getFoundingDate() - Method in class org.gbif.api.model.collections.Institution: Date when the institution was founded or established.
getFragment(long) - Method in interface org.gbif.api.service.occurrence.OccurrenceService: Returns the "fragment" of raw data (either xml response fragment or json dwca fragment) for the passed in key.
getFragmentsEmitted() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getFragmentsProcessed() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus: Number of fragments that have been processed.
getFragmentsReceived() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getFrom() - Method in class org.gbif.api.util.IsoDateInterval
getFullText() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getFunding() - Method in class org.gbif.api.model.registry.eml.Project
getFuzzyName() - Method in class org.gbif.api.model.collections.request.SearchRequest
getGadm() - Method in class org.gbif.api.model.occurrence.Occurrence
getGbifDownloadKey() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getGbifHigherTaxonKey() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getGbifNetworkKey() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getGbifOccurrenceKey() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getGbifProgramme() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getGbifProjectIdentifier() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getGbifRegion() - Method in class org.gbif.api.model.collections.request.SearchRequest
getGbifRegion() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getGbifRegion() - Method in class org.gbif.api.model.occurrence.Occurrence
getGbifRegion() - Method in class org.gbif.api.model.registry.Node
getGbifRegion() - Method in enum org.gbif.api.vocabulary.Country
getGbifTaxonKey() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getGenerationDate() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesResult
getGenericName() - Method in class org.gbif.api.model.occurrence.Occurrence
getGenericReport() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
getGenus() - Method in class org.gbif.api.model.checklistbank.NameUsage
getGenus() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getGenus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getGenus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getGenus() - Method in interface org.gbif.api.model.common.LinneanClassification: Return the genus for this usage.
getGenus() - Method in class org.gbif.api.model.occurrence.Occurrence
getGenusKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getGenusKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getGenusKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getGenusKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getGenusKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys: Return the genus key for this usage.
getGenusKey() - Method in class org.gbif.api.model.occurrence.Occurrence
getGenusOrAbove() - Method in class org.gbif.api.model.checklistbank.ParsedName: The genus part of a bi/trinomial or the monomial in case of names of higher ranks
getGeodeticDatum() - Method in class org.gbif.api.model.event.Event: The geodetic datum for the interpreted decimal coordinates.
getGeodeticDatum() - Method in class org.gbif.api.model.occurrence.Occurrence: The geodetic datum for the interpreted decimal coordinates.
getGeoDistance() - Method in class org.gbif.api.model.predicate.GeoDistancePredicate
getGeographicCoverageDescription() - Method in class org.gbif.api.model.registry.Dataset
getGeographicCoverages() - Method in class org.gbif.api.model.registry.Dataset
getGeographicDescription() - Method in class org.gbif.api.model.collections.Institution: Geographical coverage of the activities performed by an institution.
getGeography() - Method in class org.gbif.api.model.collections.Collection
getGeometry() - Method in class org.gbif.api.model.predicate.WithinPredicate
getGeoreferencedBy() - Method in class org.gbif.api.model.occurrence.Occurrence
getGid() - Method in class org.gbif.api.model.occurrence.GadmFeature
getGroup() - Method in class org.gbif.api.model.occurrence.Occurrence
getGt() - Method in class org.gbif.api.util.RangeValue
getGte() - Method in class org.gbif.api.util.RangeValue
getHabitat() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: Comma separated list of mayor habitat classification as defined by IUCN in which a species is known to exist: Habitats Vocabulary
getHabitats() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer: Convenience method that analyzes all species profile records and returns the distinct list of known habitats.
getHabitats() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getHeader() - Method in class org.gbif.utils.file.csv.CSVReader: Get the header, or null if none
getHeaderLine() - Method in interface org.gbif.utils.file.tabular.TabularDataFileReader: Get the header line of the tabular data file (if possible).
getHigherClassification(LinneanClassification) - Static method in class org.gbif.api.util.ClassificationUtils: Concatenates all higher Linnean taxa into a single dwc:higherClassification string, skipping null values.
getHigherClassificationMap() - Method in class org.gbif.api.model.checklistbank.NameUsage: An ordered map with entries for all higher Linnean ranks down to the actual direct parent of this usage.
getHigherClassificationMap() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult: An ordered map with entries for all higher Linnean ranks down to the actual direct parent of this usage.
getHigherClassificationMap() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult: An ordered map with entries for all higher Linnean ranks down to the actual direct parent of this usage.
getHigherClassificationMap() - Method in class org.gbif.api.model.occurrence.Occurrence: An ordered map with entries for all higher Linnean ranks excluding the taxonKey itself.
getHigherClassificationMap(T) - Static method in class org.gbif.api.util.ClassificationUtils: An ordered map with entries for all higher Linnean ranks down to species which are not null.
getHigherClassificationMap(T, int, Integer, String) - Static method in class org.gbif.api.util.ClassificationUtils: An ordered map with entries for all higher Linnean ranks down to the actual direct parent of this usage.
getHigherGeography() - Method in class org.gbif.api.model.occurrence.Occurrence
getHigherRank(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsage
getHigherRank(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getHigherRank(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getHigherRank(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getHigherRank(Rank) - Method in interface org.gbif.api.model.common.LinneanClassification: Gets a higher taxon property by passing the rank of it.
getHigherRank(Rank) - Method in class org.gbif.api.model.occurrence.Occurrence
getHigherRank(LinneanClassification, Rank) - Static method in class org.gbif.api.util.ClassificationUtils: Gets a higher taxon property by passing the rank of it.
getHigherRankKey(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsage
getHigherRankKey(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getHigherRankKey(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getHigherRankKey(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getHigherRankKey(Rank) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys: Gets a higher taxon key by passing the rank of it.
getHigherRankKey(Rank) - Method in class org.gbif.api.model.occurrence.Occurrence
getHigherRankKey(LinneanClassificationKeys, Rank) - Static method in class org.gbif.api.util.ClassificationUtils: Gets a higher taxon key by passing the rank of it.
getHighestBiostratigraphicZone() - Method in class org.gbif.api.model.occurrence.Occurrence
getHighlightContext() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
getHighlightContext() - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
getHighlightFields() - Method in class org.gbif.api.model.common.search.SearchRequest: Defines the fields to be highlighted if highlighting is activated.
getHomepage() - Method in class org.gbif.api.model.collections.Collection: URL containing information about a collection.
getHomepage() - Method in class org.gbif.api.model.collections.Institution: URL to the home page of an institution.
getHomepage() - Method in interface org.gbif.api.model.registry.Address: List of homepage websites.
getHomepage() - Method in class org.gbif.api.model.registry.Contact
getHomepage() - Method in class org.gbif.api.model.registry.Dataset
getHomepage() - Method in class org.gbif.api.model.registry.Network
getHomepage() - Method in class org.gbif.api.model.registry.Node
getHomepage() - Method in class org.gbif.api.model.registry.Organization
getHomepage() - Method in interface org.gbif.api.ws.mixin.DatasetMixin
getHostedDatasets(UUID, Pageable) - Method in interface org.gbif.api.service.registry.InstallationService: Provides paging service to list datasets hosted by a specific installation.
getHostingCountry() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getHostingOrganizationKey() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: Organization key of the installation that hosts the occurrence record.
getHostingOrganizationKey() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getHostingOrganizationTitle() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getHour() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
getId() - Method in class org.gbif.api.model.collections.UserId
getId() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getId() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
getId() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
getId() - Method in class org.gbif.api.v2.NameUsageMatch2.Nomenclature
getId() - Method in interface org.gbif.api.vocabulary.InterpretationRemark: Returns the identifier of the InterpretationRemark.
getId() - Method in enum org.gbif.api.vocabulary.NameUsageIssue
getId() - Method in enum org.gbif.api.vocabulary.OccurrenceIssue
getIdentifiedBy() - Method in class org.gbif.api.model.occurrence.Occurrence
getIdentifiedByIds() - Method in class org.gbif.api.model.occurrence.Occurrence
getIdentifier() - Method in class org.gbif.api.model.collections.OccurrenceMapping
getIdentifier() - Method in class org.gbif.api.model.collections.request.SearchRequest
getIdentifier() - Method in class org.gbif.api.model.common.Identifier: Other known identifier used for the same taxon.
getIdentifier() - Method in class org.gbif.api.model.common.MediaObject: The public URL that identifies and locates the media item.
getIdentifier() - Method in class org.gbif.api.model.registry.Citation
getIdentifier() - Method in class org.gbif.api.model.registry.eml.Collection: The URI (LSID or URL) of the collection.
getIdentifier() - Method in class org.gbif.api.model.registry.eml.Project: A unique identifier for the project.
getIdentifier() - Method in class org.gbif.api.model.registry.Identifier
getIdentifierByType(IdentifierType) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getIdentifierLink() - Method in class org.gbif.api.model.common.Identifier: Creates an HTTP link for an identifier if possible by passing it to some known resolvers for the specific id type.
getIdentifierLink() - Method in class org.gbif.api.model.registry.Identifier: Creates a http link for an identifier if possible by passing it to some known resolvers for the specific id type.
getIdentifierLink(String, IdentifierType) - Static method in class org.gbif.api.util.IdentifierUtils: Creates a http link for an identifier if possible by passing it to some known resolvers for the specific id type.
getIdentifiers() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getIdentifiers() - Method in class org.gbif.api.model.collections.Collection: List of alternative identifiers: UUIDs, external system identifiers, LSIDs, etc..
getIdentifiers() - Method in class org.gbif.api.model.collections.Institution
getIdentifiers() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getIdentifiers() - Method in class org.gbif.api.model.occurrence.Occurrence
getIdentifiers() - Method in class org.gbif.api.model.registry.Dataset
getIdentifiers() - Method in interface org.gbif.api.model.registry.Identifiable
getIdentifiers() - Method in class org.gbif.api.model.registry.Installation
getIdentifiers() - Method in class org.gbif.api.model.registry.Network
getIdentifiers() - Method in class org.gbif.api.model.registry.Node
getIdentifiers() - Method in class org.gbif.api.model.registry.Organization
getIdentifierType() - Method in class org.gbif.api.model.collections.request.SearchRequest
getImportantCollectors() - Method in class org.gbif.api.model.collections.Collection
getIncorporatedCollections() - Method in class org.gbif.api.model.collections.Collection
getInCountries() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getIndividualCount() - Method in class org.gbif.api.model.occurrence.Occurrence
getInfraGeneric() - Method in class org.gbif.api.model.checklistbank.ParsedName: The infrageneric part of a name, often given in parentheses between genus and species epithet, e.g.
getInfraSpecificEpithet() - Method in class org.gbif.api.model.checklistbank.ParsedName
getInfraspecificEpithet() - Method in class org.gbif.api.model.occurrence.Occurrence
getIngestion(UUID, int) - Method in interface org.gbif.api.service.pipelines.IngestionHistoryService
getInInstitutions() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getInputStream(File) - Static method in class org.gbif.utils.file.FileUtils
getInputStreamReader(InputStream) - Static method in class org.gbif.utils.file.FileUtils
getInputStreamReader(InputStream, String) - Static method in class org.gbif.utils.file.FileUtils
getInstallationKey() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: Technical installation that publishes this occurrence record.
getInstallationKey() - Method in class org.gbif.api.model.registry.Dataset
getInstallationKey() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory: Key of the synchronized installation.
getInstance() - Static method in class org.gbif.common.parsers.BasisOfRecordParser
getInstance() - Static method in class org.gbif.common.parsers.BooleanParser
getInstance() - Static method in class org.gbif.common.parsers.CitesAppendixParser
getInstance() - Static method in class org.gbif.common.parsers.ContinentParser
getInstance() - Static method in class org.gbif.common.parsers.core.ASCIIParser
getInstance() - Static method in class org.gbif.common.parsers.CountryParser
getInstance(DateComponentOrdering[]) - Static method in class org.gbif.common.parsers.date.CustomizedTextDateParser
getInstance() - Static method in class org.gbif.common.parsers.DistributionStatusParser
getInstance() - Static method in class org.gbif.common.parsers.EstablishmentMeansParser: Deprecated.
getInstance() - Static method in class org.gbif.common.parsers.geospatial.DatumParser
getInstance() - Static method in class org.gbif.common.parsers.HabitatParser
getInstance() - Static method in class org.gbif.common.parsers.KingdomParser
getInstance() - Static method in class org.gbif.common.parsers.LanguageParser
getInstance() - Static method in class org.gbif.common.parsers.LicenseParser
getInstance() - Static method in class org.gbif.common.parsers.LicenseUriParser
getInstance() - Static method in class org.gbif.common.parsers.LifeStageParser: Deprecated.
getInstance() - Static method in class org.gbif.common.parsers.MaintenanceUpdateFrequencyParser
getInstance() - Static method in class org.gbif.common.parsers.MediaParser
getInstance() - Static method in class org.gbif.common.parsers.MediaTypeParser
getInstance() - Static method in class org.gbif.common.parsers.NomCodeParser
getInstance() - Static method in class org.gbif.common.parsers.NomStatusParser
getInstance() - Static method in class org.gbif.common.parsers.OccurrenceStatusParser
getInstance() - Static method in class org.gbif.common.parsers.RankParser
getInstance() - Static method in class org.gbif.common.parsers.SexParser
getInstance() - Static method in class org.gbif.common.parsers.TaxStatusParser
getInstance() - Static method in class org.gbif.common.parsers.ThreatStatusParser
getInstance() - Static method in class org.gbif.common.parsers.TypeStatusParser
getInstance() - Static method in class org.gbif.common.parsers.TypifiedNameParser
getInstitution() - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
getInstitutionalGovernance() - Method in class org.gbif.api.model.collections.Institution: Governance nature of an institution.
getInstitutionalGovernance() - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest
getInstitutionCode() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getInstitutionCode() - Method in class org.gbif.api.model.collections.InstitutionImportParams
getInstitutionCode() - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
getInstitutionCode() - Method in class org.gbif.api.model.collections.lookup.LookupParams
getInstitutionCode() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getInstitutionCode() - Method in class org.gbif.api.model.collections.view.CollectionView
getInstitutionCode() - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
getInstitutionForConvertedCollection() - Method in class org.gbif.api.model.collections.suggestions.InstitutionChangeSuggestion
getInstitutionForNewCollectionKey() - Method in class org.gbif.api.model.collections.merge.ConvertToCollectionParams
getInstitutionId() - Method in class org.gbif.api.model.collections.lookup.LookupParams
getInstitutionKey() - Method in class org.gbif.api.model.collections.Collection: Institution that owns or hosts this collection.
getInstitutionKey() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
getInstitutionKey() - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
getInstitutionKey() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getInstitutionKey() - Method in class org.gbif.api.model.occurrence.Occurrence
getInstitutionKeys() - Method in class org.gbif.api.model.collections.request.SearchRequest
getInstitutionLink() - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
getInstitutionMatch() - Method in class org.gbif.api.model.collections.lookup.LookupResult
getInstitutionMatches() - Method in class org.gbif.api.model.collections.lookup.AlternativeMatches
getInstitutionName() - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
getInstitutionName() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getInstitutionName() - Method in class org.gbif.api.model.collections.view.CollectionView
getInterpreted() - Method in class org.gbif.api.model.common.InterpretedField: Deprecated.
getInterpretedOccurrencesPersistedError() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getInterpretedOccurrencesPersistedSuccessful() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getInvalidationReason() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
getInvalidationReason() - Method in class org.gbif.api.model.crawler.GenericValidationReport
getInvalidationReason() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
getIsInCluster() - Method in class org.gbif.api.model.occurrence.Occurrence
getIso2LetterCode() - Method in enum org.gbif.api.vocabulary.Country
getIso2LetterCode() - Method in enum org.gbif.api.vocabulary.Language
getIso3LetterCode() - Method in enum org.gbif.api.vocabulary.Country
getIso3LetterCode() - Method in enum org.gbif.api.vocabulary.Language
getIsoNumericalCode() - Method in enum org.gbif.api.vocabulary.Country
getIsSequenced() - Method in class org.gbif.api.model.occurrence.Occurrence: Flag occurrence when associatedSequences/extension exists
getIssues() - Method in class org.gbif.api.model.checklistbank.NameUsage
getIssues() - Method in class org.gbif.api.model.occurrence.Occurrence: A set of issues found for this occurrence.
getIssues() - Method in class org.gbif.common.parsers.core.OccurrenceParseResult
getIucnRedListCategory() - Method in class org.gbif.api.model.occurrence.Occurrence: The IUCN Red List Category.
getKey() - Method in class org.gbif.api.model.ChallengeCode
getKey() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getKey() - Method in class org.gbif.api.model.checklistbank.Description: A unique GBIF identifier for any description.
getKey() - Method in class org.gbif.api.model.checklistbank.NameUsage: Return the key that uniquely identifies this name usage.
getKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Return the key that uniquely identifies this name usage.
getKey() - Method in class org.gbif.api.model.checklistbank.ParsedName
getKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult: Taxon key.
getKey() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
getKey() - Method in class org.gbif.api.model.collections.Address: Unique identifier, assigned by the persistence store.
getKey() - Method in class org.gbif.api.model.collections.Collection: GBIF Unique identifier of this collection.
getKey() - Method in interface org.gbif.api.model.collections.CollectionEntity: Unique identifier.
getKey() - Method in class org.gbif.api.model.collections.Contact
getKey() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
getKey() - Method in class org.gbif.api.model.collections.Institution: GBIF unique identifier.
getKey() - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
getKey() - Method in interface org.gbif.api.model.collections.lookup.EntityMatched
getKey() - Method in class org.gbif.api.model.collections.MasterSourceMetadata
getKey() - Method in class org.gbif.api.model.collections.OccurrenceMapping: Unique identifier, assigned by the persistence store.
getKey() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getKey() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getKey() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getKey() - Method in class org.gbif.api.model.common.GbifUser
getKey() - Method in class org.gbif.api.model.common.User: Deprecated.
getKey() - Method in class org.gbif.api.model.metrics.cube.Dimension
getKey() - Method in class org.gbif.api.model.occurrence.Download
getKey() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: The GBIF assigned, persistent key to the occurrence record.
getKey() - Method in class org.gbif.api.model.pipelines.PipelineExecution
getKey() - Method in class org.gbif.api.model.pipelines.PipelineProcess
getKey() - Method in class org.gbif.api.model.pipelines.PipelineStep
getKey() - Method in class org.gbif.api.model.predicate.InPredicate
getKey() - Method in class org.gbif.api.model.predicate.RangePredicate
getKey() - Method in class org.gbif.api.model.predicate.SimplePredicate
getKey() - Method in class org.gbif.api.model.registry.CitationContact: Key associated to this contact.
getKey() - Method in class org.gbif.api.model.registry.Comment
getKey() - Method in class org.gbif.api.model.registry.Contact
getKey() - Method in class org.gbif.api.model.registry.Dataset
getKey() - Method in class org.gbif.api.model.registry.Endpoint
getKey() - Method in class org.gbif.api.model.registry.Grid
getKey() - Method in class org.gbif.api.model.registry.Identifier
getKey() - Method in class org.gbif.api.model.registry.Installation
getKey() - Method in class org.gbif.api.model.registry.MachineTag
getKey() - Method in class org.gbif.api.model.registry.Metadata
getKey() - Method in class org.gbif.api.model.registry.Network
getKey() - Method in interface org.gbif.api.model.registry.NetworkEntity
getKey() - Method in class org.gbif.api.model.registry.Node
getKey() - Method in class org.gbif.api.model.registry.Organization
getKey() - Method in class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
getKey() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getKey() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
getKey() - Method in class org.gbif.api.model.registry.search.KeyTitleResult
getKey() - Method in class org.gbif.api.model.registry.Tag
getKey() - Method in class org.gbif.api.v2.RankedName
getKey() - Method in class org.gbif.common.parsers.core.KeyValue
getKeywordCollections() - Method in class org.gbif.api.model.registry.Dataset
getKeywords() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getKeywords() - Method in class org.gbif.api.model.registry.eml.KeywordCollection
getKeywords() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getKingdom() - Method in class org.gbif.api.model.checklistbank.NameUsage
getKingdom() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getKingdom() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getKingdom() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getKingdom() - Method in interface org.gbif.api.model.common.LinneanClassification: Return the kingdom for this usage.
getKingdom() - Method in class org.gbif.api.model.occurrence.Occurrence
getKingdomCounts() - Method in interface org.gbif.api.service.occurrence.OccurrenceDistributionIndexService: Returns the occurrence records count by kingdom.
getKingdomKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getKingdomKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getKingdomKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getKingdomKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getKingdomKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys: Return the kingdom key for this usage.
getKingdomKey() - Method in class org.gbif.api.model.occurrence.Occurrence
getLabel() - Method in enum org.gbif.api.model.pipelines.StepType
getLanguage() - Method in class org.gbif.api.model.checklistbank.Description: ISO 639-1 language code used for the description.
getLanguage() - Method in class org.gbif.api.model.checklistbank.VernacularName: ISO 639-1 language code used for the vernacular name value.
getLanguage() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getLanguage() - Method in class org.gbif.api.model.registry.Dataset
getLanguage() - Method in class org.gbif.api.model.registry.Network
getLanguage() - Method in class org.gbif.api.model.registry.Organization
getLastCrawled() - Method in class org.gbif.api.model.checklistbank.NameUsage: The date this record was last crawled during clb indexing.
getLastCrawled() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage: The date this record was last crawled during clb indexing.
getLastCrawled() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: The date this record was last crawled/harvested from the endpoint.
getLastInterpreted() - Method in class org.gbif.api.model.checklistbank.NameUsage: The date this record was last interpreted during indexing.
getLastInterpreted() - Method in class org.gbif.api.model.occurrence.Occurrence: The date this occurrence last went through the interpretation phase of the GBIF indexing.
getLastLogin() - Method in class org.gbif.api.model.common.GbifUser
getLastLogin() - Method in class org.gbif.api.model.common.User: Deprecated.
getLastName() - Method in class org.gbif.api.model.collections.Contact
getLastName() - Method in class org.gbif.api.model.common.AbstractGbifUser
getLastName() - Method in class org.gbif.api.model.common.User: Deprecated.
getLastName() - Method in class org.gbif.api.model.registry.CitationContact: Contact's last name.
getLastName() - Method in class org.gbif.api.model.registry.Contact
getLastParsed() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: The date this record was last parsed from raw xml/json into verbatim verbatimFields.
getLastRecordLineNumber() - Method in interface org.gbif.utils.file.tabular.TabularDataFileReader: The line number of where the last record returned by TabularDataFileReader.read() starts.
getLastRecordNumber() - Method in interface org.gbif.utils.file.tabular.TabularDataFileReader: Represents the number of record returned by the TabularDataFileReader.read() method.
getLastStep() - Method in class org.gbif.api.model.pipelines.WorkflowStep
getLat() - Method in class org.gbif.common.parsers.geospatial.LatLng
getLatestAgeOrHighestStage() - Method in class org.gbif.api.model.occurrence.Occurrence
getLatestEonOrHighestEonothem() - Method in class org.gbif.api.model.occurrence.Occurrence
getLatestEpochOrHighestSeries() - Method in class org.gbif.api.model.occurrence.Occurrence
getLatestEraOrHighestErathem() - Method in class org.gbif.api.model.occurrence.Occurrence
getLatestPeriodOrHighestSystem() - Method in class org.gbif.api.model.occurrence.Occurrence
getLatinLabel() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus
getLatitude() - Method in class org.gbif.api.model.collections.Institution: Decimal latitude of where this institution is located.
getLatitude() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
getLatitude() - Method in class org.gbif.api.model.predicate.GeoDistancePredicate
getLatitude() - Method in class org.gbif.api.model.registry.eml.geospatial.Point
getLatitude() - Method in class org.gbif.api.model.registry.Organization
getLevel(T) - Method in class org.gbif.api.model.pipelines.PipelinesWorkflow.Graph
getLevel0() - Method in class org.gbif.api.model.occurrence.Gadm
getLevel1() - Method in class org.gbif.api.model.occurrence.Gadm
getLevel2() - Method in class org.gbif.api.model.occurrence.Gadm
getLevel3() - Method in class org.gbif.api.model.occurrence.Gadm
getLicense() - Method in class org.gbif.api.model.checklistbank.Description: Official permission to do something with the resource.
getLicense() - Method in class org.gbif.api.model.common.MediaObject: Licence for this media item.
getLicense() - Method in class org.gbif.api.model.occurrence.Download: Get the license assigned to this occurrence download.
getLicense() - Method in class org.gbif.api.model.occurrence.Occurrence: Applied license to the occurrence record or dataset to which this record belongs to.
getLicense() - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
getLicense() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getLicense() - Method in interface org.gbif.api.ws.mixin.LicenseMixin
getLicenseTitle() - Method in enum org.gbif.api.vocabulary.License
getLicenseUrl() - Method in enum org.gbif.api.vocabulary.License
getLifeForm() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: A term describing the growth/lifeform of an organism.
getLifeStage() - Method in class org.gbif.api.model.checklistbank.Distribution: The distribution information pertains solely to a specific life stage of the taxon.
getLifeStage() - Method in class org.gbif.api.model.checklistbank.VernacularName: The age class or life stage of the species for which the vernacular name applies.
getLifeStage() - Method in class org.gbif.api.model.occurrence.Occurrence
getLimit() - Method in interface org.gbif.api.model.common.paging.Pageable: Maximum number of records to be returned.
getLimit() - Method in class org.gbif.api.model.common.paging.PageableBase: Total of rows that are returned.
getLineage() - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
getLineIterator(InputStream) - Static method in class org.gbif.utils.file.FileUtils
getLineIterator(InputStream, String) - Static method in class org.gbif.utils.file.FileUtils
getLinesPerMemorySort() - Method in class org.gbif.utils.file.FileUtils
getLink() - Method in class org.gbif.api.model.checklistbank.Reference: Link.
getLink() - Method in enum org.gbif.api.vocabulary.NomenclaturalCode
getLiteratureType() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getLivingPeriod() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: The (geological) time a currently extinct organism is known to have lived.
getLivingPeriods() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer: Convenience method that analyzes all species profile records and returns the distinct list of known living periods.
getLng() - Method in class org.gbif.common.parsers.geospatial.LatLng
getLocale() - Method in class org.gbif.api.model.common.AbstractGbifUser
getLocale() - Method in enum org.gbif.api.vocabulary.Language
getLocality() - Method in class org.gbif.api.model.checklistbank.Distribution: The verbatim name of the area this distribution record is about.
getLocality() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getLocationId() - Method in class org.gbif.api.model.checklistbank.Distribution: A code for the named area this distributon record is about.
getLogoUrl() - Method in class org.gbif.api.model.collections.Institution: Logo/Image that identifies the institution.
getLogoUrl() - Method in class org.gbif.api.model.registry.Dataset
getLogoUrl() - Method in class org.gbif.api.model.registry.Network
getLogoUrl() - Method in class org.gbif.api.model.registry.Node
getLogoUrl() - Method in class org.gbif.api.model.registry.Organization
getLogoUrl() - Method in interface org.gbif.api.ws.mixin.EntityWithLogoMixin
getLongitude() - Method in class org.gbif.api.model.collections.Institution: Decimal longitude of where this institution is located.
getLongitude() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
getLongitude() - Method in class org.gbif.api.model.predicate.GeoDistancePredicate
getLongitude() - Method in class org.gbif.api.model.registry.eml.geospatial.Point
getLongitude() - Method in class org.gbif.api.model.registry.Organization
getLower() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
getLower() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
getLowestBiostratigraphicZone() - Method in class org.gbif.api.model.occurrence.Occurrence
getLt() - Method in class org.gbif.api.util.RangeValue
getLte() - Method in class org.gbif.api.util.RangeValue
getMachineTagName() - Method in class org.gbif.api.model.collections.request.SearchRequest
getMachineTagNamespace() - Method in class org.gbif.api.model.collections.request.SearchRequest
getMachineTags() - Method in class org.gbif.api.model.collections.Collection
getMachineTags() - Method in class org.gbif.api.model.collections.Institution
getMachineTags() - Method in class org.gbif.api.model.registry.Dataset
getMachineTags() - Method in class org.gbif.api.model.registry.Endpoint
getMachineTags() - Method in class org.gbif.api.model.registry.Installation
getMachineTags() - Method in interface org.gbif.api.model.registry.MachineTaggable
getMachineTags() - Method in class org.gbif.api.model.registry.Network
getMachineTags() - Method in class org.gbif.api.model.registry.Node
getMachineTags() - Method in class org.gbif.api.model.registry.Organization
getMachineTagValue() - Method in class org.gbif.api.model.collections.request.SearchRequest
getMailingAddress() - Method in class org.gbif.api.model.collections.Collection: Address used to send/receive physical mail.
getMailingAddress() - Method in interface org.gbif.api.model.collections.Contactable: Address used to send and receive mail.
getMailingAddress() - Method in class org.gbif.api.model.collections.Institution
getMailingCity() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
getMailingCountry() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
getMailingCountry() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getMaintenanceDescription() - Method in class org.gbif.api.model.registry.Dataset: A description of the maintenance frequency of this resource.
getMaintenanceUpdateFrequency() - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
getMarker() - Method in enum org.gbif.api.vocabulary.Rank
getMassInGram() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: Maximum observed weight of an organism in grams.
getMasterSource() - Method in class org.gbif.api.model.collections.Collection
getMasterSource() - Method in interface org.gbif.api.model.collections.CollectionEntity: Master source of the entity.
getMasterSource() - Method in class org.gbif.api.model.collections.Institution
getMasterSource() - Method in class org.gbif.api.model.collections.SourceableField.Source
getMasterSourceMetadata() - Method in class org.gbif.api.model.collections.Collection
getMasterSourceMetadata() - Method in interface org.gbif.api.model.collections.CollectionEntity: Master source metadata
getMasterSourceMetadata() - Method in class org.gbif.api.model.collections.Institution
getMasterSourceMetadata(UUID) - Method in interface org.gbif.api.service.collections.CollectionEntityService: Returns the MasterSourceMetadata of the entity.
getMasterSourceType() - Method in class org.gbif.api.model.collections.request.SearchRequest
getMatches() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getMatchType() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getMatchType() - Method in class org.gbif.api.model.collections.lookup.Match
getMatchType() - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
getMaxLat() - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
getMaxLatitude() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
getMaxLong() - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
getMaxLongitude() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
getMaxPercent() - Method in class org.gbif.api.model.registry.Grid
getMedia() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getMedia() - Method in class org.gbif.api.model.occurrence.Occurrence
getMember() - Method in class org.gbif.api.model.occurrence.Occurrence
getMergeTargetKey() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getMergeTargetKey() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getMessage() - Method in class org.gbif.api.model.common.messaging.Response
getMessage() - Method in class org.gbif.api.model.pipelines.PipelineStep
getMessage() - Method in class org.gbif.api.model.pipelines.RunPipelineResponse
getMessageKey() - Method in class org.gbif.api.model.common.messaging.Response
getMetadata(int) - Method in interface org.gbif.api.service.registry.DatasetService: Get a metadata description by its key.
getMetadataDocument(UUID) - Method in interface org.gbif.api.service.registry.DatasetService: Retrieves a GBIF generated EML document overlaying GBIF information with any existing metadata document data.
getMetadataDocument(int) - Method in interface org.gbif.api.service.registry.DatasetService: Gets the actual metadata document content by its key.
getMetadataProviders() - Method in class org.gbif.api.util.ContactAdapter: Get the list of Contact of type ContactType.METADATA_AUTHOR.
getMeters() - Method in enum org.gbif.api.model.occurrence.geo.DistanceUnit
getMethod() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
getMethodSteps() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
getMetrics() - Method in class org.gbif.api.model.pipelines.PipelineStep
getMetrics(int) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Gets the metrics for a given name usage.
getMillisecond() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
getMinDist() - Method in class org.gbif.api.model.registry.Grid
getMinDistCount() - Method in class org.gbif.api.model.registry.Grid
getMinLat() - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
getMinLatitude() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
getMinLong() - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
getMinLongitude() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
getMinMaxCellIdsForBoundingBox(double, double, double, double) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Return a min cell id and a max cell id for this bounding box.
getMinute() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
getMod360CellIdFor(double) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Get mod 360 cell id.
getModified() - Method in class org.gbif.api.model.checklistbank.NameUsage: The interpreted dc:modified from the verbatim source data.
getModified() - Method in class org.gbif.api.model.collections.Collection
getModified() - Method in interface org.gbif.api.model.collections.CollectionEntity: Date when the records was last modified.
getModified() - Method in class org.gbif.api.model.collections.Contact
getModified() - Method in class org.gbif.api.model.collections.Institution
getModified() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getModified() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getModified() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getModified() - Method in class org.gbif.api.model.occurrence.Download
getModified() - Method in class org.gbif.api.model.occurrence.Occurrence: The interpreted dc:modified from the verbatim source data.
getModified() - Method in class org.gbif.api.model.pipelines.PipelineStep
getModified() - Method in class org.gbif.api.model.registry.Comment
getModified() - Method in class org.gbif.api.model.registry.Contact
getModified() - Method in class org.gbif.api.model.registry.Dataset
getModified() - Method in class org.gbif.api.model.registry.Endpoint
getModified() - Method in class org.gbif.api.model.registry.Installation
getModified() - Method in class org.gbif.api.model.registry.Metadata
getModified() - Method in class org.gbif.api.model.registry.Network
getModified() - Method in interface org.gbif.api.model.registry.NetworkEntity
getModified() - Method in class org.gbif.api.model.registry.Node
getModified() - Method in class org.gbif.api.model.registry.Organization
getModifiedBy() - Method in class org.gbif.api.model.collections.Collection
getModifiedBy() - Method in interface org.gbif.api.model.collections.CollectionEntity: Person or agent that modified the database record.
getModifiedBy() - Method in class org.gbif.api.model.collections.Contact
getModifiedBy() - Method in class org.gbif.api.model.collections.Institution
getModifiedBy() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getModifiedBy() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getModifiedBy() - Method in class org.gbif.api.model.pipelines.PipelineStep
getModifiedBy() - Method in class org.gbif.api.model.registry.Comment
getModifiedBy() - Method in class org.gbif.api.model.registry.Contact
getModifiedBy() - Method in class org.gbif.api.model.registry.Dataset
getModifiedBy() - Method in class org.gbif.api.model.registry.Endpoint
getModifiedBy() - Method in class org.gbif.api.model.registry.Installation
getModifiedBy() - Method in class org.gbif.api.model.registry.Metadata
getModifiedBy() - Method in class org.gbif.api.model.registry.Network
getModifiedBy() - Method in interface org.gbif.api.model.registry.NetworkEntity
getModifiedBy() - Method in class org.gbif.api.model.registry.Node
getModifiedBy() - Method in class org.gbif.api.model.registry.Organization
getMonth() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getMonth() - Method in class org.gbif.api.model.occurrence.DownloadStatistics
getMonth() - Method in class org.gbif.api.model.occurrence.Occurrence: The month of the year of the event date starting with zero for january following Date.
getMonth() - Method in class org.gbif.common.parsers.date.AtomizedLocalDate
getMonth() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
getMonth() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearMonthDay
getMostRestrictive(License, License, License) - Static method in enum org.gbif.api.vocabulary.License: Get the most restrictive license between the 2 provided licenses.
getName() - Method in class org.gbif.api.model.collections.Collection: Descriptive name of a collection.
getName() - Method in interface org.gbif.api.model.collections.CollectionEntity: Descriptive name of an entity.
getName() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
getName() - Method in class org.gbif.api.model.collections.Institution: Name or title of an institution.
getName() - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
getName() - Method in interface org.gbif.api.model.collections.lookup.EntityMatched
getName() - Method in class org.gbif.api.model.collections.request.SearchRequest
getName() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getName() - Method in class org.gbif.api.model.common.AbstractGbifUser
getName() - Method in class org.gbif.api.model.common.AppPrincipal
getName() - Method in class org.gbif.api.model.common.GbifUserPrincipal
getName() - Method in class org.gbif.api.model.common.search.Facet.Count: Name is the label/name/title used to distinguish this category in the list of counts.
getName() - Method in class org.gbif.api.model.common.User: Deprecated.
getName() - Method in class org.gbif.api.model.common.UserPrincipal: Deprecated.
getName() - Method in class org.gbif.api.model.occurrence.GadmFeature
getName() - Method in class org.gbif.api.model.pipelines.PipelineStep.MetricInfo
getName() - Method in class org.gbif.api.model.registry.eml.Collection: The official name of the Collection in the local language.
getName() - Method in class org.gbif.api.model.registry.eml.DataDescription: The name representing the data object being described.
getName() - Method in class org.gbif.api.model.registry.MachineTag
getName() - Method in class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
getName() - Method in class org.gbif.api.v2.RankedName
getName() - Method in enum org.gbif.api.vocabulary.TagName: Actual machine tag name.
getNameForNewInstitution() - Method in class org.gbif.api.model.collections.merge.ConvertToCollectionParams
getNameForNewInstitutionForConvertedCollection() - Method in class org.gbif.api.model.collections.suggestions.InstitutionChangeSuggestion
getNameKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getNameKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getNameKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getNames() - Method in enum org.gbif.api.model.occurrence.geo.DistanceUnit
getNamespace() - Method in class org.gbif.api.model.registry.MachineTag
getNamespace() - Method in enum org.gbif.api.vocabulary.TagName: Namespace to which belong this tag.
getNamespace() - Method in enum org.gbif.api.vocabulary.TagNamespace
getNameType() - Method in class org.gbif.api.model.checklistbank.NameUsage
getNameType() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getNameUsagesCount() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getNetworkKeys() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: The GBIF Network associated to the publishing dataset.
getNetworkKeys() - Method in class org.gbif.api.model.registry.Dataset: Networks in which this dataset is a constituent.
getNetworkKeys() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getNextSteps() - Method in class org.gbif.api.model.pipelines.WorkflowStep
getNode() - Method in class org.gbif.api.model.pipelines.PipelinesWorkflow.Graph.Edge
getNodeEdges(T) - Method in class org.gbif.api.model.pipelines.PipelinesWorkflow.Graph
getNodesQuantity() - Method in class org.gbif.api.model.pipelines.PipelinesWorkflow.Graph
getNomenclaturalStatus() - Method in class org.gbif.api.model.checklistbank.NameUsage: The status related to the conformance to the relevant rules of nomenclature.
getNomenclaturalStatus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getNomenclature() - Method in class org.gbif.api.v2.NameUsageMatch2
getNomStatus() - Method in class org.gbif.api.model.checklistbank.ParsedName: Any nomenclatoral remarks given in this name, e.g.
getNote() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch: Optional notes on the matching.
getNote() - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
getNotes() - Method in class org.gbif.api.model.collections.Collection
getNotes() - Method in class org.gbif.api.model.collections.Contact
getNotes() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getNotho() - Method in class org.gbif.api.model.checklistbank.ParsedName: For hybrid names notho indicates which part of the name is considered a hybrid, i.e.
getNotificationAddresses() - Method in class org.gbif.api.model.occurrence.DownloadRequest
getNotificationAddressesAsString() - Method in class org.gbif.api.model.occurrence.DownloadRequest: Returns the notification addresses as single string.
getNotInCountries() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getNotInInstitutions() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getNubCoveragePct() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getNubKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getNubKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getNubKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getNubMatchingCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getNumberDatasets() - Method in class org.gbif.api.model.occurrence.Download: Number of datasets in the download file.
getNumberDownloads() - Method in class org.gbif.api.model.occurrence.DownloadStatistics
getNumberOrganizations() - Method in class org.gbif.api.model.occurrence.Download
getNumberParsed() - Method in class org.gbif.common.parsers.date.DateTimeMultiParser.MultipleParseResult
getNumberPublishingCountries() - Method in class org.gbif.api.model.occurrence.Download
getNumberRecords() - Method in class org.gbif.api.model.pipelines.PipelineStep
getNumberRecords() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage: Number of records that the dataset has provided to the occurrence download.
getNumberSpecimens() - Method in class org.gbif.api.model.collections.Collection
getNumberSpecimens() - Method in class org.gbif.api.model.collections.Institution: Estimated number of specimens hosted by an institution.
getNumberSpecimens() - Method in class org.gbif.api.model.collections.request.SearchRequest
getNumByRank(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Gets the count of usages by a rank.
getNumChildren() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Returns the number of direct taxonomic elements under this usage.
getNumClass() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Returns the number of classes that are below this taxon.
getNumConstituents() - Method in class org.gbif.api.model.registry.Dataset
getNumConstituents() - Method in class org.gbif.api.model.registry.Network
getNumDescendants() - Method in class org.gbif.api.model.checklistbank.NameUsage: The number of all accepted taxonomic elements under this usage.
getNumDescendants() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: The number of all accepted taxonomic elements under this usage.
getNumDescendants() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getNumFamily() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Returns the number of families that are below this taxon.
getNumFound() - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
getNumGenus() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Returns the number of genus that are below this taxon.
getNumOccurrences() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getNumOrder() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Returns the number of orders that are below this taxon.
getNumPhylum() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Returns the number of phyla that are below this taxon.
getNumPublishedDatasets() - Method in class org.gbif.api.model.registry.Organization
getNumSpecies() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Returns the number of species that are below this taxon.
getNumSubgenus() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Returns the number of distinct subgenera that are below this taxon.
getNumSynonyms() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics: Returns the number of related synonyms this usage possses.
getOccurrenceCount() - Method in class org.gbif.api.model.collections.Collection
getOccurrenceCount() - Method in class org.gbif.api.model.collections.Institution
getOccurrenceCount() - Method in class org.gbif.api.model.collections.request.SearchRequest
getOccurrenceId() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getOccurrenceId() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
getOccurrenceMappings() - Method in class org.gbif.api.model.collections.Collection
getOccurrenceMappings() - Method in class org.gbif.api.model.collections.Institution
getOccurrenceMappings() - Method in interface org.gbif.api.model.collections.OccurrenceMappeable
getOccurrenceReport() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
getOccurrenceStatus() - Method in class org.gbif.api.model.occurrence.Occurrence
getOccurrenceWorkflow() - Static method in class org.gbif.api.model.pipelines.PipelinesWorkflow
getOffset() - Method in interface org.gbif.api.model.common.paging.Pageable: Defines how many items to skip before beginning to return records.
getOffset() - Method in class org.gbif.api.model.common.paging.PageableBase: Defines how many items to skip before beginning to return rows.
getOrDefault(Map<K, V>, K, V) - Static method in class org.gbif.utils.collection.MapUtils: Returns a maps value or a given default if not present.
getOrder() - Method in class org.gbif.api.model.checklistbank.NameUsage
getOrder() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getOrder() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getOrder() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getOrder() - Method in interface org.gbif.api.model.common.LinneanClassification: Return the order for this usage.
getOrder() - Method in class org.gbif.api.model.occurrence.Occurrence
getOrdering() - Method in class org.gbif.common.parsers.date.DateTimeParser
getOrderKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getOrderKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getOrderKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getOrderKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getOrderKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys: Return the order key for this usage.
getOrderKey() - Method in class org.gbif.api.model.occurrence.Occurrence
getOrganismQuantity() - Method in class org.gbif.api.model.occurrence.Occurrence: A number or enumeration value for the quantity of organisms.
getOrganismQuantityType() - Method in class org.gbif.api.model.occurrence.Occurrence: The type of quantification system used for the quantity of organisms.
getOrganization() - Method in interface org.gbif.api.model.registry.Address: Institution name as part of the address
getOrganization() - Method in class org.gbif.api.model.registry.Contact
getOrganization() - Method in class org.gbif.api.model.registry.Network: Alias for the network title
getOrganization() - Method in class org.gbif.api.model.registry.Node
getOrganization() - Method in class org.gbif.api.model.registry.Organization
getOrganizationKey() - Method in class org.gbif.api.model.collections.InstitutionImportParams
getOrganizationKey() - Method in class org.gbif.api.model.registry.Installation
getOrigin() - Method in class org.gbif.api.model.checklistbank.NameUsage: The origin of this name usage record, i.e.
getOrigin() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getOtherCatalogNumbers() - Method in class org.gbif.api.model.occurrence.Occurrence
getOtherCount(String) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics: Get the metrics for other dynamic counts.
getOtherCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getOtherResults() - Method in class org.gbif.common.parsers.date.DateTimeMultiParser.MultipleParseResult
getOwnerInstitutionCode() - Method in class org.gbif.api.model.collections.lookup.LookupParams
getPage() - Method in class org.gbif.api.model.collections.request.SearchRequest
getPage() - Method in class org.gbif.api.model.registry.search.RequestSearchParams
getPagesCrawled() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus: Number of pages crawled in total.
getPagesFragmentedError() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getPagesFragmentedSuccessful() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus: Number of pages that have been fragmented.
getParameter() - Method in class org.gbif.api.model.predicate.IsNotNullPredicate
getParameter() - Method in class org.gbif.api.model.predicate.IsNullPredicate
getParameters() - Method in class org.gbif.api.model.common.search.SearchRequest: List of input parameters of the search operation.
getParent() - Method in class org.gbif.api.model.checklistbank.NameUsage: The scientific name of the parent.
getParent() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getParent() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getParentCode() - Method in class org.gbif.api.model.collections.OccurrenceMapping
getParentDatasetKey() - Method in class org.gbif.api.model.registry.Dataset
getParentIdentifier() - Method in class org.gbif.api.model.registry.eml.Collection: The identifier for the parent collection for this sub-collection.
getParentKey() - Method in class org.gbif.api.model.checklistbank.NameUsage: Returns the immediate parent.
getParentKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getParentKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getParsedName(int) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Gets the parsed name representation of a given name usage.
getParticipantSince() - Method in class org.gbif.api.model.registry.Node: 4 digit year since the node participant first joined GBIF.
getParticipantTitle() - Method in class org.gbif.api.model.registry.Node
getParticipationStatus() - Method in class org.gbif.api.model.registry.Node
getPassword() - Method in class org.gbif.api.model.registry.Installation: Get the installation password.
getPassword() - Method in class org.gbif.api.model.registry.Organization: Get the organization password.
getPasswordHash() - Method in class org.gbif.api.model.common.GbifUser
getPasswordHash() - Method in class org.gbif.api.model.common.User: Deprecated.
getPathway() - Method in class org.gbif.api.model.occurrence.Occurrence
getPayload() - Method in class org.gbif.common.parsers.core.ParseResult
getPendingAbcdaDatasetProcesses() - Method in interface org.gbif.api.service.crawler.DatasetProcessService
getPendingCamtrapDpDatasetProcesses() - Method in interface org.gbif.api.service.crawler.DatasetProcessService
getPendingDwcaDatasetProcesses() - Method in interface org.gbif.api.service.crawler.DatasetProcessService
getPendingXmlDatasetProcesses() - Method in interface org.gbif.api.service.crawler.DatasetProcessService
getPercent() - Method in class org.gbif.api.model.registry.Grid
getPeriod() - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
getPersonalCollection() - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
getPhone() - Method in class org.gbif.api.model.collections.Collection
getPhone() - Method in interface org.gbif.api.model.collections.CollectionEntity: Phones of the entity
getPhone() - Method in class org.gbif.api.model.collections.Contact
getPhone() - Method in class org.gbif.api.model.collections.Institution
getPhone() - Method in interface org.gbif.api.model.registry.Address: phone in EML
getPhone() - Method in class org.gbif.api.model.registry.Contact
getPhone() - Method in class org.gbif.api.model.registry.Network
getPhone() - Method in class org.gbif.api.model.registry.Node
getPhone() - Method in class org.gbif.api.model.registry.Organization
getPhylum() - Method in class org.gbif.api.model.checklistbank.NameUsage
getPhylum() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getPhylum() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getPhylum() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getPhylum() - Method in interface org.gbif.api.model.common.LinneanClassification: Return the phylum for this usage.
getPhylum() - Method in class org.gbif.api.model.occurrence.Occurrence
getPhylumKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getPhylumKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getPhylumKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getPhylumKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getPhylumKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys: Return the phylum key for this usage.
getPhylumKey() - Method in class org.gbif.api.model.occurrence.Occurrence
getPhysicalCity() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
getPhysicalCountry() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
getPipelineExecutions() - Method in class org.gbif.api.model.pipelines.IngestionProcess
getPipelineProcess(UUID, int) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Gets the PipelineProcess identified by the dataset and attempt identifiers.
getPipelineStep(long) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Gets the PipelineStep of the specified keys.
getPipelineStepsByExecutionKey(long) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Gets the PipelineSteps list of the execution key.
getPipelinesVersion() - Method in class org.gbif.api.model.pipelines.PipelineStep
getPipelinesVersion() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
getPoints() - Method in class org.gbif.api.model.registry.eml.geospatial.Polygon
getPosition() - Method in class org.gbif.api.model.collections.Contact
getPosition() - Method in class org.gbif.api.model.registry.Contact
getPostalCode() - Method in class org.gbif.api.model.collections.Address: International postal code of this address.
getPostalCode() - Method in class org.gbif.api.model.collections.Contact
getPostalCode() - Method in interface org.gbif.api.model.registry.Address: postalCode in EML
getPostalCode() - Method in class org.gbif.api.model.registry.Contact
getPostalCode() - Method in class org.gbif.api.model.registry.Network
getPostalCode() - Method in class org.gbif.api.model.registry.Node
getPostalCode() - Method in class org.gbif.api.model.registry.Organization
getPredefinedMixins() - Static method in class org.gbif.api.ws.mixin.Mixins: Return an immutable map of the predefined Jackson Mixins used by the web services.
getPredefinedMixins(Predicate<Class<?>>) - Static method in class org.gbif.api.ws.mixin.Mixins: Get an immutable map of the predefined Jackson Mixins after the provided keyFilter is applied.
getPredicate() - Method in class org.gbif.api.model.occurrence.PredicateDownloadRequest
getPredicate() - Method in class org.gbif.api.model.occurrence.search.OccurrencePredicateSearchRequest
getPredicate() - Method in class org.gbif.api.model.predicate.NotPredicate
getPredicates() - Method in class org.gbif.api.model.predicate.CompoundPredicate: Returns all the predicates this compound predicate is made out of in an immutable collection.
getPredicates() - Method in enum org.gbif.api.vocabulary.TagNamespace: Gets the list of TagName which belongs to the namespace.
getPreferredResult() - Method in class org.gbif.common.parsers.date.DateTimeMultiParser.MultipleParseResult
getPrefix() - Method in class org.gbif.api.model.common.DOI
getPreparations() - Method in class org.gbif.api.model.occurrence.Occurrence
getPreservationTypes() - Method in class org.gbif.api.model.collections.Collection: Types of preservation mechanisms used for this collections.
getPreservationTypes() - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
getPrevious() - Method in class org.gbif.api.model.collections.suggestions.Change
getProcessingErrorType() - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
getProcessStateChecklist() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getProcessStateOccurrence() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getProcessStateSample() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getProgrammeAcronym() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: GBIF programme acronym/identifier.
getProject() - Method in class org.gbif.api.model.registry.Dataset
getProjectId() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: GBIF project identifier.
getProjectIdentifier() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getProParteKey() - Method in class org.gbif.api.model.checklistbank.NameUsage: Pro parte synonyms, i.e.
getProperties() - Method in class org.gbif.api.model.crawler.CrawlJob: Used to save protocol specific information (e.g.
getProperty(String) - Method in class org.gbif.api.model.crawler.CrawlJob
getProposed() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getProposed() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getProposedBy() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getProposedBy() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getProposerEmail() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getProposerEmail() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getProtocol() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
getProvince() - Method in class org.gbif.api.model.collections.Address: Province, region or area where this address is located.
getProvince() - Method in class org.gbif.api.model.collections.Collection
getProvince() - Method in class org.gbif.api.model.collections.Contact
getProvince() - Method in class org.gbif.api.model.collections.Institution
getProvince() - Method in interface org.gbif.api.model.registry.Address: administrativeArea in EML
getProvince() - Method in class org.gbif.api.model.registry.Contact
getProvince() - Method in class org.gbif.api.model.registry.Network
getProvince() - Method in class org.gbif.api.model.registry.Node
getProvince() - Method in class org.gbif.api.model.registry.Organization
getPubDate() - Method in class org.gbif.api.model.registry.Dataset
getPublished() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getPublishedByGbifRegion() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
getPublishedIn() - Method in class org.gbif.api.model.checklistbank.NameUsage: Original publication for this name usage.
getPublishedIn() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getPublisher() - Method in class org.gbif.api.model.common.MediaObject: An entity responsible for making the media item available.
getPublisher() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getPublisherTitle() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getPublishingCountry() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: The country of the organization that publishes the dataset to which the occurrence belongs.
getPublishingCountry() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getPublishingCountryCode() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
getPublishingOrganizationKey() - Method in class org.gbif.api.model.registry.Dataset
getPublishingOrganizationKey() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getPublishingOrganizationTitle() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getPublishingOrgKey() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
getPurpose() - Method in class org.gbif.api.model.registry.Dataset
getQ() - Method in class org.gbif.api.model.collections.request.SearchRequest
getQ() - Method in class org.gbif.api.model.common.search.SearchRequest: Query parameter.
getQ() - Method in class org.gbif.api.model.predicate.FullTextSearchPredicate: Text query parameter.
getQFields() - Method in class org.gbif.api.model.common.search.SearchRequest: Defines whether to match against fields with scientific or vernacular names or both.
getQualityControl() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
getQuotedBy() - Method in class org.gbif.utils.file.csv.CSVReaderFactory.CSVMetadata
getQuotedBy() - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
getRank() - Method in class org.gbif.api.model.checklistbank.NameUsage: Returns the rank for this usage.
getRank() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getRank() - Method in class org.gbif.api.model.checklistbank.ParsedName
getRank() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getRank() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getRank() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
getRank() - Method in class org.gbif.api.v2.RankedName
getRawOccurrencesPersistedError() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getRawOccurrencesPersistedNew() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getRawOccurrencesPersistedUnchanged() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getRawOccurrencesPersistedUpdated() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getReadRows() - Method in class org.gbif.utils.file.csv.CSVReader
getReason() - Method in enum org.gbif.api.model.common.messaging.Response.StatusCode
getReasons() - Method in class org.gbif.api.model.collections.lookup.Match
getRecordCount() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getRecordedBy() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getRecordedBy() - Method in class org.gbif.api.model.occurrence.Occurrence
getRecordedByIds() - Method in class org.gbif.api.model.occurrence.Occurrence
getRecordId() - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
getRecordsMissingOccurrenceId() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
getRecordsWithInvalidTriplets() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
getReferenceList() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getReferences() - Method in class org.gbif.api.model.checklistbank.NameUsage: A URI link or reference to the source of this record, the record's "homepage".
getReferences() - Method in class org.gbif.api.model.common.MediaObject
getReferences() - Method in class org.gbif.api.model.occurrence.Occurrence: An external link to more details, the records "homepage".
getRegistryKey() - Method in class org.gbif.api.util.DatasetKey: A registered UUID of either a dataset or the network of origin in the case of external datasets.
getRelatedOccurrenceId() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
getRelatedResponses() - Method in class org.gbif.api.model.common.messaging.ResponseChain
getRelatedTerms() - Method in interface org.gbif.api.vocabulary.InterpretationRemark: Set containing the Term considered to flag this remark.
getRelatedTerms() - Method in enum org.gbif.api.vocabulary.NameUsageIssue
getRelatedTerms() - Method in enum org.gbif.api.vocabulary.OccurrenceIssue
getRelations() - Method in class org.gbif.api.model.occurrence.Occurrence
getRelativeOrganismQuantity() - Method in class org.gbif.api.model.occurrence.Occurrence: Calculated filed organismQuantity / sampleSizeValue, if the type is identical
getRelevance() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getRemarks() - Method in class org.gbif.api.model.checklistbank.Distribution: Additional notes on the distribution.
getRemarks() - Method in class org.gbif.api.model.checklistbank.NameUsage
getRemarks() - Method in class org.gbif.api.model.checklistbank.ParsedName: Any further remarks found
getRemarks() - Method in class org.gbif.api.model.checklistbank.Reference: Annotation of taxon-specific information related to the referenced publication.
getRemarks() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
getRemarks() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
getRemarks() - Method in class org.gbif.api.model.pipelines.PipelineExecution
getReplacedBy() - Method in class org.gbif.api.model.collections.Collection
getReplacedBy() - Method in interface org.gbif.api.model.collections.CollectionEntity: Replacement of the entity (if applies).
getReplacedBy() - Method in class org.gbif.api.model.collections.Institution
getReplacedBy() - Method in class org.gbif.api.model.collections.request.SearchRequest
getReplacementEntityKey() - Method in class org.gbif.api.model.collections.merge.MergeParams
getRequest() - Method in class org.gbif.api.model.occurrence.Download: Request that originated the download.
getRerunReason() - Method in class org.gbif.api.model.pipelines.PipelineExecution
getRerunReason() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
getResolution() - Method in class org.gbif.common.parsers.date.AtomizedLocalDate
getResolution() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime: Get the resolution of the AtomizedLocalDateTime.
getResource(String) - Static method in class org.gbif.utils.file.ResourcesUtil: Returns a URL pointing to resourceName if the resource is found using the context class loader.
getResourceCreator() - Method in class org.gbif.api.util.ContactAdapter: Get the ResourceCreator Contact.
getResponseStatus() - Method in class org.gbif.api.model.pipelines.RunPipelineResponse
getResult() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory: Result of the metasync operation.
getResult(String) - Method in interface org.gbif.api.service.occurrence.DownloadRequestService
getResult() - Method in class org.gbif.common.parsers.date.DateTimeMultiParser.MultipleParseResult: Return the preferredResult if available otherwise the first element of otherResults.
getResultFile(String) - Method in interface org.gbif.api.service.occurrence.DownloadRequestService
getResultFile(Download) - Method in interface org.gbif.api.service.occurrence.DownloadRequestService
getResults() - Method in class org.gbif.api.model.common.paging.PagingResponse: Gets the list of results.
getRights() - Method in class org.gbif.api.model.registry.Dataset: Any kind of (copy)rights/IPR statements that apply to the datasets data.
getRightsHolder() - Method in class org.gbif.api.model.common.MediaObject
getRoles() - Method in class org.gbif.api.model.common.AbstractGbifUser
getRoles() - Method in class org.gbif.api.model.common.User: Deprecated.
getRoles() - Method in class org.gbif.api.model.registry.CitationContact: Roles or contact type of this contact.
getRootException() - Method in class org.gbif.api.model.common.messaging.Response
getRootNodesFor(Set<T>) - Method in class org.gbif.api.model.pipelines.PipelinesWorkflow.Graph
getRowNumbersMissingId() - Method in class org.gbif.api.model.crawler.GenericValidationReport
getRowType() - Method in enum org.gbif.api.vocabulary.Extension
getRunner() - Method in class org.gbif.api.model.pipelines.PipelineStep
getRunningDatasetProcesses() - Method in interface org.gbif.api.service.crawler.DatasetProcessService
getRunningExecutionKey(UUID) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Gets execution key for running dataset
getRunningPipelineProcess(Pageable) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Returns information about all running pipelines executions
getSameCity() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getSameCode() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getSameCountry() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getSameFuzzyName() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getSameInstitution() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getSameName() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
getSampleSizeUnit() - Method in class org.gbif.api.model.occurrence.Occurrence: The unit of measurement of the size (time duration, length, area, or volume) of a sample in a sampling event.
getSampleSizeValue() - Method in class org.gbif.api.model.occurrence.Occurrence: A numeric value for a measurement of the size (time duration, length, area, or volume) of a sample in a sampling event.
getSampling() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
getSamplingDescription() - Method in class org.gbif.api.model.registry.Dataset
getSamplingProtocol() - Method in class org.gbif.api.model.occurrence.Occurrence
getSchema() - Method in interface org.gbif.api.service.metrics.CubeService: Provides the list of rollups thus specifying the available combinations of addressable dimensions for a cube.
getSchemeURI() - Method in enum org.gbif.api.util.validators.identifierschemes.IdentifierScheme
getScientificName() - Method in class org.gbif.api.model.checklistbank.NameUsage: The scientific name (with date and authorship information if applicable).
getScientificName() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch: The scientific name of the matched name usage.
getScientificName() - Method in class org.gbif.api.model.checklistbank.ParsedName: The exact verbatim, full scientific name as given before parsing.
getScientificName() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getScientificName() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getScientificName() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: The scientific name originally used for the specimen, species or genus.
getScientificName() - Method in class org.gbif.api.model.occurrence.Occurrence: The scientific name for taxonKey from the GBIF backbone.
getScientificName() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
getSecond() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
getSelfLink() - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
getSelfLink() - Method in interface org.gbif.api.model.collections.lookup.EntityMatched
getSendNotification() - Method in class org.gbif.api.model.occurrence.DownloadRequest
getSensu() - Method in class org.gbif.api.model.checklistbank.ParsedName: Taxon concept references as part of the name, e.g.
getSettings() - Method in class org.gbif.api.model.common.AbstractGbifUser: Gets the settings which may be empty but never null.
getSettings() - Method in class org.gbif.api.model.common.User: Deprecated.

Gets the settings which may be empty but never null.
getSeverity() - Method in interface org.gbif.api.vocabulary.InterpretationRemark: Returns the default severity of this InterpretationRemark.
getSeverity() - Method in enum org.gbif.api.vocabulary.NameUsageIssue
getSeverity() - Method in enum org.gbif.api.vocabulary.OccurrenceIssue
getSex() - Method in class org.gbif.api.model.checklistbank.VernacularName: The sex (gender) of the taxon for which the vernacular name applies when the vernacular name is limited to a specific gender of a species.
getSex() - Method in class org.gbif.api.model.occurrence.Occurrence
getShuffle() - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest: This flag allows to sort the results in a random order by specifying a seed.
getSize() - Method in class org.gbif.api.model.occurrence.Download: Size in bytes of the produced file.
getSizeInMillimeter() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: Maximum observed size of an organism in millimetres.
getSnippet() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse.Match
getSortBy() - Method in class org.gbif.api.model.collections.request.SearchRequest
getSortOrder() - Method in class org.gbif.api.model.collections.request.SearchRequest
getSource() - Method in class org.gbif.api.model.checklistbank.Description: Source reference of this description, a URL or full publication citation.
getSource() - Method in class org.gbif.api.model.checklistbank.Distribution: Source reference for this distribution record.
getSource() - Method in interface org.gbif.api.model.checklistbank.NameUsageExtension
getSource() - Method in class org.gbif.api.model.checklistbank.Reference
getSource() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
getSource() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: The source.
getSource() - Method in class org.gbif.api.model.checklistbank.VernacularName: Bibliographic citation referencing a source where the vernacular name refers to the cited species.
getSource() - Method in class org.gbif.api.model.collections.MasterSourceMetadata
getSource() - Method in class org.gbif.api.model.common.MediaObject
getSource() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getSource() - Method in class org.gbif.api.model.occurrence.Download: Source of the download to determine how the download was originated.
getSource() - Method in class org.gbif.api.v2.NameUsageMatch2.Nomenclature
getSourceableParts() - Method in class org.gbif.api.model.collections.SourceableField.Source
getSourceId() - Method in class org.gbif.api.model.collections.MasterSourceMetadata
getSources() - Method in class org.gbif.api.model.collections.SourceableField
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.Description
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.Distribution
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.NameUsage: For backbone taxa the source taxon key refers to the original name usage that was used during backbone building and is the primary reason that this taxon exists in the backbone.
getSourceTaxonKey() - Method in interface org.gbif.api.model.checklistbank.NameUsageExtension: If the source is another name usage this is the taxonKey of that usage.
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMediaObject
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.Reference
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.VernacularName
getSpecies() - Method in class org.gbif.api.model.checklistbank.NameUsage
getSpecies() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getSpecies() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getSpecies() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getSpecies() - Method in interface org.gbif.api.model.common.LinneanClassification: Return the species for this usage.
getSpecies() - Method in class org.gbif.api.model.occurrence.Occurrence: The corresponding scientific name of the speciesKey from the GBIF backbone.
getSpeciesKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getSpeciesKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getSpeciesKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getSpeciesKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getSpeciesKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys: Return the species key for this usage.
getSpeciesKey() - Method in class org.gbif.api.model.occurrence.Occurrence: The accepted species for this occurrence.
getSpeciesProfiles() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getSpecificEpithet() - Method in class org.gbif.api.model.checklistbank.ParsedName
getSpecificEpithet() - Method in class org.gbif.api.model.occurrence.Occurrence
getSpecimenPreservationMethod() - Method in class org.gbif.api.model.registry.eml.Collection: Picklist keyword indicating the process or technique used to prevent physical deterioration of non-living collections.
getSpellCheckCount() - Method in class org.gbif.api.model.common.search.SearchRequest
getSpellCheckResponse() - Method in class org.gbif.api.model.common.search.SearchResponse
getStackTrace(Throwable) - Static method in class org.gbif.utils.text.StringUtils: Reads a stack trace from an exception and returns it as a String.
getStart() - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
getStartDayOfYear() - Method in class org.gbif.api.model.checklistbank.Distribution: Seasonal temporal subcontext within the eventDate context.
getStartDayOfYear() - Method in class org.gbif.api.model.occurrence.Occurrence: The earliest integer day of the year of the event.
getStarted() - Method in class org.gbif.api.model.pipelines.PipelineStep
getStartedCrawling() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus: Timestamp of when the crawl was actually started by a crawler.
getState() - Method in class org.gbif.api.model.pipelines.PipelineStep
getStateProvince() - Method in class org.gbif.api.model.occurrence.Occurrence
getStatus() - Method in class org.gbif.api.model.checklistbank.Distribution: Term describing the occurrence status of the organism in the given area based on how frequent the species occurs.
getStatus() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch: The taxonomic status of the backbone usage.
getStatus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getStatus() - Method in class org.gbif.api.model.collections.lookup.Match
getStatus() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getStatus() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getStatus() - Method in class org.gbif.api.model.common.DoiData
getStatus() - Method in class org.gbif.api.model.common.messaging.Response
getStatus() - Method in class org.gbif.api.model.occurrence.Download
getStatus() - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
getStatus() - Method in class org.gbif.common.parsers.core.ParseResult
getStatusCode() - Method in class org.gbif.api.model.common.messaging.Response
getStepFinished() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
getSteps() - Method in class org.gbif.api.model.pipelines.PipelineExecution
getSteps() - Method in class org.gbif.api.model.pipelines.RunPipelineResponse
getStepsFailed() - Method in class org.gbif.api.model.pipelines.RunPipelineResponse
getStepStarted() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
getStepState() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
getStepsToRun() - Method in class org.gbif.api.model.pipelines.PipelineExecution
getStepType() - Method in class org.gbif.api.model.pipelines.WorkflowStep
getStepType() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
getStrain() - Method in class org.gbif.api.model.checklistbank.ParsedName: The strain or isolate name.
getStudyAreaDescription() - Method in class org.gbif.api.model.registry.eml.Project
getStudyExtent() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
getSubgenus() - Method in class org.gbif.api.model.checklistbank.NameUsage
getSubgenus() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getSubgenus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getSubgenus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getSubgenus() - Method in interface org.gbif.api.model.common.LinneanClassification: Return the canonical subgenus name for this usage.
getSubgenus() - Method in class org.gbif.api.model.occurrence.Occurrence
getSubgenusKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
getSubgenusKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
getSubgenusKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getSubgenusKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
getSubgenusKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys: Return the subgenus key for this usage.
getSubgenusKey() - Method in class org.gbif.api.model.occurrence.Occurrence
getSubtype() - Method in class org.gbif.api.model.registry.Dataset
getSubtype() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getSubtype() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
getSuffix() - Method in class org.gbif.api.model.common.DOI
getSuggested() - Method in class org.gbif.api.model.collections.suggestions.Change
getSuggestedEntity() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getSuggestedEntity() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getSuggestion(String) - Method in class org.gbif.api.model.common.search.SpellCheckResponse
getSuggestions() - Method in class org.gbif.api.model.common.search.SpellCheckResponse
getSyncDate() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory: Date when the metasync operation was executed.
getSynonyms() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getSynonymsCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getSystemSettings() - Method in class org.gbif.api.model.common.AbstractGbifUser: Gets the settings which may be empty but never null.
getTags() - Method in class org.gbif.api.model.collections.Collection: (Meta)Tags or labels.
getTags() - Method in class org.gbif.api.model.collections.Institution
getTags() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getTags() - Method in class org.gbif.api.model.registry.Dataset
getTags() - Method in class org.gbif.api.model.registry.Installation
getTags() - Method in class org.gbif.api.model.registry.Network
getTags() - Method in class org.gbif.api.model.registry.Node
getTags() - Method in class org.gbif.api.model.registry.Organization
getTags() - Method in interface org.gbif.api.model.registry.Taggable
getTarget() - Method in class org.gbif.api.model.common.DoiData
getTargetUrl() - Method in class org.gbif.api.model.crawler.CrawlJob
getTaxonID() - Method in class org.gbif.api.model.checklistbank.NameUsage: The original taxonID of the name usage as found in the source.
getTaxonID() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.Description: The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.Distribution: The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in interface org.gbif.api.model.checklistbank.NameUsageExtension: The name usage "taxon" key this extension record belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMediaObject: The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.Reference: The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: The name usage "taxon" key this species profile belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.VernacularName: The name usage "taxon" key to which this vernacular name belongs.
getTaxonKey() - Method in class org.gbif.api.model.occurrence.Occurrence: The best matching, accepted GBIF backbone name usage representing this occurrence.
getTaxonomicCoverage() - Method in class org.gbif.api.model.collections.Collection
getTaxonomicCoverages() - Method in class org.gbif.api.model.registry.Dataset
getTaxonomicDescription() - Method in class org.gbif.api.model.collections.Institution: Taxonomic description of the collections maintained by an institution.
getTaxonomicExpertise() - Method in class org.gbif.api.model.collections.Contact
getTaxonomicStatus() - Method in class org.gbif.api.model.checklistbank.NameUsage: The taxonomic status of the name usage.
getTaxonomicStatus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getTaxonomicStatus() - Method in class org.gbif.api.model.occurrence.Occurrence: The status of the use of the scientificName as a label for a taxon.
getTaxonRank() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: The rank of the taxon bearing the scientific name.
getTaxonRank() - Method in class org.gbif.api.model.occurrence.Occurrence
getTemporal() - Method in class org.gbif.api.model.checklistbank.Distribution: Relevant temporal context for this entire distribution record including all properties preferably given as a year range or single year on which the distribution record is valid.
getTemporalCoverages() - Method in class org.gbif.api.model.registry.Dataset
getTerminalEpithet() - Method in class org.gbif.api.model.checklistbank.ParsedName
getText() - Method in class org.gbif.api.model.registry.Citation
getThesaurus() - Method in class org.gbif.api.model.registry.eml.KeywordCollection
getThreatStatus() - Method in class org.gbif.api.model.checklistbank.Distribution: Threat status of a species as defined by IUCN (http://www.iucnredlist.org/static/categories_criteria_3_1#categories).
getThreatStatus() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer: Convenience method that analyzes all distribution records and returns the distinct list of known threat status.
getThreatStatuses() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getTimeout() - Method in class org.gbif.nameparser.NameParserGbifV1
getTitle() - Method in class org.gbif.api.model.checklistbank.Reference: Deprecated.
getTitle() - Method in class org.gbif.api.model.common.Identifier: The optional title of an identifier, mostly for linking.
getTitle() - Method in class org.gbif.api.model.common.MediaObject: The media item title.
getTitle() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getTitle() - Method in class org.gbif.api.model.registry.Dataset
getTitle() - Method in class org.gbif.api.model.registry.eml.Project
getTitle() - Method in class org.gbif.api.model.registry.Installation
getTitle() - Method in class org.gbif.api.model.registry.Network
getTitle() - Method in interface org.gbif.api.model.registry.NetworkEntity
getTitle() - Method in class org.gbif.api.model.registry.Node
getTitle() - Method in class org.gbif.api.model.registry.Organization
getTitle() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getTitle() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
getTitle() - Method in class org.gbif.api.model.registry.search.KeyTitleResult
getTitle() - Method in enum org.gbif.api.vocabulary.Continent
getTitle() - Method in enum org.gbif.api.vocabulary.Country
getTitle() - Method in enum org.gbif.api.vocabulary.NomenclaturalCode
getTitleEnglish() - Method in enum org.gbif.api.vocabulary.Language
getTitleNative() - Method in enum org.gbif.api.vocabulary.Language
getTitles(Collection<UUID>) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Retrieves all titles for the requested entity keys in one go
getTo() - Method in class org.gbif.api.util.IsoDateInterval
getToc() - Method in class org.gbif.api.model.checklistbank.TableOfContents
getToc(int) - Method in interface org.gbif.api.service.checklistbank.DescriptionService: Returns a table of content for all available descriptions of a name usage.
getToken() - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateToken
getToken(TextualMonthDateTokenizer.TokenType) - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateTokens
getTopics() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getTotalCount() - Method in class org.gbif.api.model.registry.Grid
getTotalRecords() - Method in class org.gbif.api.model.occurrence.Download: Number of occurrence records in the download file.
getTotalRecords() - Method in class org.gbif.api.model.occurrence.DownloadStatistics
getType() - Method in class org.gbif.api.model.checklistbank.Description: Returns the type used to categorize paragraphs of a taxon description.
getType() - Method in class org.gbif.api.model.checklistbank.ParsedName: A coarse classification of names helping to deal with different syntactical name string structures.
getType() - Method in class org.gbif.api.model.checklistbank.Reference: Used to assign a bibliographic reference to list of taxonomic or nomenclatural categories.
getType() - Method in class org.gbif.api.model.collections.Institution: Describes the main activity of an institution.
getType() - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest
getType() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
getType() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
getType() - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
getType() - Method in class org.gbif.api.model.collections.UserId
getType() - Method in class org.gbif.api.model.common.Identifier: Type of identifier.
getType() - Method in class org.gbif.api.model.common.MediaObject
getType() - Method in class org.gbif.api.model.metrics.cube.Dimension
getType() - Method in class org.gbif.api.model.occurrence.AgentIdentifier
getType() - Method in class org.gbif.api.model.occurrence.DownloadRequest
getType() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
getType() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
getType() - Method in class org.gbif.api.model.pipelines.PipelineStep
getType() - Method in class org.gbif.api.model.registry.Contact
getType() - Method in class org.gbif.api.model.registry.Dataset
getType() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
getType() - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
getType() - Method in class org.gbif.api.model.registry.Endpoint
getType() - Method in class org.gbif.api.model.registry.Identifier
getType() - Method in class org.gbif.api.model.registry.Installation
getType() - Method in class org.gbif.api.model.registry.Metadata
getType() - Method in class org.gbif.api.model.registry.Node
getType() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
getType() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
getTypeDesignatedBy() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: The citation of the publication where the type designation is found.
getTypeDesignationType() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: The reason why this specimen or name is designated as a type.
getTypeSpecimenCount() - Method in class org.gbif.api.model.collections.Collection
getTypeSpecimenCount() - Method in class org.gbif.api.model.collections.Institution
getTypeSpecimenCount() - Method in class org.gbif.api.model.collections.request.SearchRequest
getTypeSpecimens() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getTypeStatus() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getTypeStatus() - Method in class org.gbif.api.model.occurrence.Occurrence
getTypeVerbatim() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
getTypifiedName() - Method in class org.gbif.api.model.occurrence.Occurrence: The scientific name the type status of this specimen applies to.
getUniqueOccurrenceIds() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
getUniqueTriplets() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
getUnit() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.Distance
getUnit() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
getUpper() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
getUpper() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
getUrl() - Method in class org.gbif.api.model.common.DOI: See DOI Handbook, Visual presentation and other representation of DOI names.
getUrl() - Method in class org.gbif.api.model.registry.eml.DataDescription: The URL to download the resource in the mentioned format.
getUrl() - Method in class org.gbif.api.model.registry.Endpoint
getUsage() - Method in class org.gbif.api.v2.NameUsageMatch2
getUsageKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch: The name usage key of the name usage that has been matched.
getUsagesCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
getUser() - Method in class org.gbif.api.model.common.GbifUserPrincipal
getUser() - Method in class org.gbif.api.model.common.UserPrincipal: Deprecated.
getUserId() - Method in class org.gbif.api.model.registry.CitationContact: GBIF Portal users associated to this contact.
getUserId() - Method in class org.gbif.api.model.registry.Contact
getUserIds() - Method in class org.gbif.api.model.collections.Contact
getUserName() - Method in class org.gbif.api.model.common.AbstractGbifUser: The unique, immutable drupal user account name.
getUserName() - Method in class org.gbif.api.model.common.User: Deprecated.

The unique, immutable drupal user account name.
getUtf8Reader(File) - Static method in class org.gbif.utils.file.FileUtils
getValidatorWorkflow() - Static method in class org.gbif.api.model.pipelines.PipelinesWorkflow
getValue() - Method in class org.gbif.api.model.occurrence.AgentIdentifier
getValue() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.Distance
getValue() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
getValue() - Method in class org.gbif.api.model.pipelines.PipelineStep.MetricInfo
getValue() - Method in class org.gbif.api.model.predicate.RangePredicate
getValue() - Method in class org.gbif.api.model.predicate.SimplePredicate
getValue() - Method in class org.gbif.api.model.registry.MachineTag
getValue() - Method in class org.gbif.api.model.registry.Tag
getValue() - Method in class org.gbif.common.parsers.core.KeyValue
getValue() - Method in class org.gbif.common.parsers.geospatial.DoubleAccuracy
getValues() - Method in class org.gbif.api.model.predicate.InPredicate
getVerbatim() - Method in class org.gbif.api.model.common.InterpretedField: Deprecated.
getVerbatim(int) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Returns the verbatim data for the usage or null if its a generated usage having no verbatim data.
getVerbatim(Long) - Method in interface org.gbif.api.service.occurrence.OccurrenceService: Attempt to find the verbatim values for an occurrence matching the passed key.
getVerbatimEventDate() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getVerbatimExtensions() - Method in class org.gbif.api.model.occurrence.DownloadRequest: Requested verbatimExtensions for this download.
getVerbatimField(Term) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: Get the value of a specific field (Term).
getVerbatimFields() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: A map holding all verbatim core terms.
getVerbatimLabel() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getVerbatimLatitude() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getVerbatimLongitude() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
getVerbatimOccurrencesPersistedError() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getVerbatimOccurrencesPersistedSuccessful() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
getVerbatimScientificName() - Method in class org.gbif.api.model.occurrence.Occurrence: The verbatim scientific name as provided by the source.
getVernacularName() - Method in class org.gbif.api.model.checklistbank.NameUsage: A common or vernacular name for this usage.
getVernacularName() - Method in class org.gbif.api.model.checklistbank.VernacularName: A common or vernacular name.
getVernacularNames() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
getVernacularNames() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
getVersion() - Method in class org.gbif.api.model.registry.Dataset
getWaterBody() - Method in class org.gbif.api.model.occurrence.Occurrence
getWebsites() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getWorkflow(boolean, boolean) - Static method in class org.gbif.api.model.pipelines.PipelinesWorkflow
getYear() - Method in class org.gbif.api.model.checklistbank.ParsedName: The year of publication as given in the authorship.
getYear() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
getYear() - Method in class org.gbif.api.model.occurrence.DownloadStatistics
getYear() - Method in class org.gbif.api.model.occurrence.Occurrence: The full year of the event date.
getYear() - Method in class org.gbif.common.parsers.date.AtomizedLocalDate
getYear() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
getYear() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearDayOfYear
getYear() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearMonthDay
getYearCounts(int, int) - Method in interface org.gbif.api.service.occurrence.OccurrenceDistributionIndexService: Returns the occurrence records count by year.
getYearInt() - Method in class org.gbif.api.model.checklistbank.ParsedName
getYearMonth() - Method in class org.gbif.api.model.occurrence.DownloadStatistics: Ignore in serialization, only year and month is relevant.
GLOBAL_BOUNDING_BOX - Static variable in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
Graph() - Constructor for class org.gbif.api.model.pipelines.PipelinesWorkflow.Graph
GreaterThanOrEqualsPredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate: This predicate checks if its key is greater than or equal its value.
GreaterThanOrEqualsPredicate(S, String) - Constructor for class org.gbif.api.model.predicate.GreaterThanOrEqualsPredicate
GreaterThanPredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate: This predicate checks if its key is greater than its value.
GreaterThanPredicate(S, String) - Constructor for class org.gbif.api.model.predicate.GreaterThanPredicate
Grid - Class in org.gbif.api.model.registry
Grid() - Constructor for class org.gbif.api.model.registry.Grid

H

Habitat - Enum in org.gbif.api.vocabulary: Very coarse habitat vocabulary matching the boolean biome flags found in the species profile extension.
HabitatParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/habitat.txt.
handleBatch(byte[], byte[], ExportFormat) - Method in interface org.gbif.api.service.collections.BatchService: Handles a batch.
hasAuthorship() - Method in class org.gbif.api.model.checklistbank.ParsedName
hasContent(LinneanClassification) - Static method in class org.gbif.api.util.ClassificationUtils
hasCoreField(Term) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
hasExtension(Extension) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
hasExtension(Term) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
hashCode() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
hashCode() - Method in class org.gbif.api.model.checklistbank.Description
hashCode() - Method in class org.gbif.api.model.checklistbank.Distribution
hashCode() - Method in class org.gbif.api.model.checklistbank.NameUsage
hashCode() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
hashCode() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
hashCode() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
hashCode() - Method in class org.gbif.api.model.checklistbank.ParsedName
hashCode() - Method in class org.gbif.api.model.checklistbank.Reference
hashCode() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
hashCode() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
hashCode() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
hashCode() - Method in class org.gbif.api.model.checklistbank.TableOfContents
hashCode() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
hashCode() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
hashCode() - Method in class org.gbif.api.model.checklistbank.VernacularName
hashCode() - Method in class org.gbif.api.model.collections.Address
hashCode() - Method in class org.gbif.api.model.collections.AlternativeCode
hashCode() - Method in class org.gbif.api.model.collections.CollectionImportParams
hashCode() - Method in class org.gbif.api.model.collections.Contact
hashCode() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
hashCode() - Method in class org.gbif.api.model.collections.InstitutionImportParams
hashCode() - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
hashCode() - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
hashCode() - Method in class org.gbif.api.model.collections.lookup.LookupParams
hashCode() - Method in class org.gbif.api.model.collections.lookup.Match
hashCode() - Method in class org.gbif.api.model.collections.MasterSourceMetadata
hashCode() - Method in class org.gbif.api.model.collections.OccurrenceMapping
hashCode() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
hashCode() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse.Match
hashCode() - Method in class org.gbif.api.model.collections.SourceableField
hashCode() - Method in class org.gbif.api.model.collections.SourceableField.Source
hashCode() - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
hashCode() - Method in class org.gbif.api.model.collections.suggestions.Change
hashCode() - Method in class org.gbif.api.model.collections.suggestions.InstitutionChangeSuggestion
hashCode() - Method in class org.gbif.api.model.collections.UserId
hashCode() - Method in class org.gbif.api.model.common.AbstractGbifUser
hashCode() - Method in class org.gbif.api.model.common.DOI
hashCode() - Method in class org.gbif.api.model.common.DoiData
hashCode() - Method in class org.gbif.api.model.common.GbifUser
hashCode() - Method in class org.gbif.api.model.common.Identifier
hashCode() - Method in class org.gbif.api.model.common.InterpretedField: Deprecated.
hashCode() - Method in class org.gbif.api.model.common.MediaObject
hashCode() - Method in class org.gbif.api.model.common.paging.PageableBase
hashCode() - Method in class org.gbif.api.model.common.paging.PagingResponse
hashCode() - Method in class org.gbif.api.model.common.search.Facet.Count
hashCode() - Method in class org.gbif.api.model.common.search.Facet
hashCode() - Method in class org.gbif.api.model.common.search.SearchResponse
hashCode() - Method in class org.gbif.api.model.common.search.SpellCheckResponse
hashCode() - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
hashCode() - Method in class org.gbif.api.model.common.User: Deprecated.
hashCode() - Method in class org.gbif.api.model.crawler.CrawlJob
hashCode() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
hashCode() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
hashCode() - Method in class org.gbif.api.model.crawler.GenericValidationReport
hashCode() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
hashCode() - Method in class org.gbif.api.model.metrics.cube.Dimension
hashCode() - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
hashCode() - Method in class org.gbif.api.model.occurrence.AgentIdentifier
hashCode() - Method in class org.gbif.api.model.occurrence.DownloadRequest
hashCode() - Method in class org.gbif.api.model.occurrence.DownloadStatistics
hashCode() - Method in class org.gbif.api.model.occurrence.Gadm
hashCode() - Method in class org.gbif.api.model.occurrence.GadmFeature
hashCode() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.Distance
hashCode() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
hashCode() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
hashCode() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
hashCode() - Method in class org.gbif.api.model.occurrence.PredicateDownloadRequest
hashCode() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
hashCode() - Method in class org.gbif.api.model.pipelines.IngestionProcess
hashCode() - Method in class org.gbif.api.model.pipelines.PipelineExecution
hashCode() - Method in class org.gbif.api.model.pipelines.PipelineProcess
hashCode() - Method in class org.gbif.api.model.pipelines.PipelineStep
hashCode() - Method in class org.gbif.api.model.pipelines.PipelineStep.MetricInfo
hashCode() - Method in class org.gbif.api.model.pipelines.RunPipelineResponse
hashCode() - Method in class org.gbif.api.model.pipelines.WorkflowStep
hashCode() - Method in class org.gbif.api.model.pipelines.ws.SearchResult
hashCode() - Method in class org.gbif.api.model.predicate.CompoundPredicate
hashCode() - Method in class org.gbif.api.model.predicate.FullTextSearchPredicate
hashCode() - Method in class org.gbif.api.model.predicate.GeoDistancePredicate
hashCode() - Method in class org.gbif.api.model.predicate.InPredicate
hashCode() - Method in class org.gbif.api.model.predicate.IsNotNullPredicate
hashCode() - Method in class org.gbif.api.model.predicate.IsNullPredicate
hashCode() - Method in class org.gbif.api.model.predicate.NotPredicate
hashCode() - Method in class org.gbif.api.model.predicate.SimplePredicate
hashCode() - Method in class org.gbif.api.model.predicate.WithinPredicate
hashCode() - Method in class org.gbif.api.model.registry.Citation
hashCode() - Method in class org.gbif.api.model.registry.CitationContact
hashCode() - Method in class org.gbif.api.model.registry.Comment
hashCode() - Method in class org.gbif.api.model.registry.Contact
hashCode() - Method in class org.gbif.api.model.registry.Dataset
hashCode() - Method in class org.gbif.api.model.registry.eml.Collection
hashCode() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
hashCode() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
hashCode() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
hashCode() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
hashCode() - Method in class org.gbif.api.model.registry.eml.DataDescription
hashCode() - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
hashCode() - Method in class org.gbif.api.model.registry.eml.KeywordCollection
hashCode() - Method in class org.gbif.api.model.registry.eml.Project
hashCode() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
hashCode() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
hashCode() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
hashCode() - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
hashCode() - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
hashCode() - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
hashCode() - Method in class org.gbif.api.model.registry.Endpoint
hashCode() - Method in class org.gbif.api.model.registry.Grid
hashCode() - Method in class org.gbif.api.model.registry.Identifier
hashCode() - Method in class org.gbif.api.model.registry.Installation
hashCode() - Method in class org.gbif.api.model.registry.MachineTag
hashCode() - Method in class org.gbif.api.model.registry.Metadata
hashCode() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
hashCode() - Method in class org.gbif.api.model.registry.Network
hashCode() - Method in class org.gbif.api.model.registry.Node
hashCode() - Method in class org.gbif.api.model.registry.Organization
hashCode() - Method in class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
hashCode() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
hashCode() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
hashCode() - Method in class org.gbif.api.model.registry.search.KeyTitleResult
hashCode() - Method in class org.gbif.api.model.registry.Tag
hashCode() - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
hashCode() - Method in class org.gbif.api.v2.NameUsageMatch2
hashCode() - Method in class org.gbif.api.v2.NameUsageMatch2.Nomenclature
hashCode() - Method in class org.gbif.api.v2.RankedName
hashCode() - Method in class org.gbif.common.parsers.core.KeyValue
hashCode() - Method in class org.gbif.common.parsers.date.AtomizedLocalDate
hashCode() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
hashCode() - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateToken
hashCode() - Method in class org.gbif.common.parsers.geospatial.DoubleAccuracy
hashCode() - Method in class org.gbif.common.parsers.geospatial.LatLng
hashCode() - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
hasLowerBound() - Method in class org.gbif.api.util.Range: Returns true if this range has a lower endpoint.
hasNext() - Method in class org.gbif.utils.file.csv.CSVReader
hasRole(UserRole) - Method in class org.gbif.api.model.common.AbstractGbifUser: Checks if the user has the given user role.
hasRole(String) - Method in class org.gbif.api.model.common.AppPrincipal
hasRole(String) - Method in interface org.gbif.api.model.common.ExtendedPrincipal
hasRole(String) - Method in class org.gbif.api.model.common.GbifUserPrincipal: Checks if the user has the given string based role.
hasRole(UserRole) - Method in class org.gbif.api.model.common.User: Deprecated.

Checks if the user has the given user role.
hasRole(String) - Method in class org.gbif.api.model.common.UserPrincipal: Deprecated.

Checks if the user has the given string based role.
hasRowError() - Method in interface org.gbif.utils.file.ClosableReportingIterator: Return true if an error was encountered while iterating over row.
hasRowError() - Method in class org.gbif.utils.file.csv.CSVReader
hasSpatialIssue() - Method in class org.gbif.api.model.event.Event: Convenience method checking if any spatial validation rule has not passed.
hasSpatialIssue() - Method in class org.gbif.api.model.occurrence.Occurrence: Convenience method checking if any spatial validation rule has not passed.
hasUpperBound() - Method in class org.gbif.api.util.Range: Returns true if this range has an upper endpoint.
hasVerbatimField(Term) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
header - Variable in class org.gbif.utils.file.csv.CSVReader
headerRows - Variable in class org.gbif.utils.file.csv.CSVReader
higherThan(Rank) - Method in enum org.gbif.api.vocabulary.Rank
history(List<FinishReason>, Pageable) - Method in interface org.gbif.api.service.pipelines.IngestionHistoryService
history(UUID, List<FinishReason>, Pageable) - Method in interface org.gbif.api.service.pipelines.IngestionHistoryService
history(Pageable) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Lists the history of all PipelineProcess, sorted descending from the most recent one.
history(UUID, Pageable) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Lists the history of all PipelineProcess of a dataset, sorted descending from the most recent one.
hostedDatasets(UUID, Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService: Provides paging service to list datasets hosted by, but not owned by, a specific organization.
hostedDatasets(UUID, DatasetType, OrganizationService) - Static method in class org.gbif.api.util.iterables.Iterables
hostedDatasets(UUID, DatasetType, InstallationService) - Static method in class org.gbif.api.util.iterables.Iterables
HttpURI - Annotation Type in org.gbif.api.util: Validates that the URI field is absolute, beginning with either http or https.
HuhValidator - Class in org.gbif.api.util.validators.identifierschemes
HuhValidator() - Constructor for class org.gbif.api.util.validators.identifierschemes.HuhValidator
humanReadableByteCount(long, boolean) - Static method in class org.gbif.utils.file.FileUtils: Converts the byte size into human-readable format.
HumanSize - Class in org.gbif.utils
HumanSize() - Constructor for class org.gbif.utils.HumanSize
HYBRID_MARKER - Static variable in class org.gbif.api.model.checklistbank.ParsedName

I

Identifiable - Interface in org.gbif.api.model.registry: Generic identifier interface for entities.
identifier(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
identifier(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
Identifier - Class in org.gbif.api.model.common: Identifier Model Object represents an alternative identifier for an occurrence or name usage.
Identifier() - Constructor for class org.gbif.api.model.common.Identifier
Identifier - Class in org.gbif.api.model.registry
Identifier() - Constructor for class org.gbif.api.model.registry.Identifier
Identifier(IdentifierType, String) - Constructor for class org.gbif.api.model.registry.Identifier
IDENTIFIER_PARAM - Static variable in class org.gbif.api.model.registry.search.RequestSearchParams
IDENTIFIER_TYPE_PARAM - Static variable in class org.gbif.api.model.registry.search.RequestSearchParams
IdentifierScheme - Enum in org.gbif.api.util.validators.identifierschemes
IdentifierSchemeValidator - Interface in org.gbif.api.util.validators.identifierschemes: Validation and normalization interface for identifier schemes.
IdentifierService - Interface in org.gbif.api.service.checklistbank: Service interface for Identifier methods.
IdentifierService - Interface in org.gbif.api.service.registry: Service provides a set of operations on Identifier.
identifierType(IdentifierType) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
identifierType(IdentifierType) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
IdentifierType - Enum in org.gbif.api.vocabulary: Enumeration for all possible identifier types.
IdentifierUtils - Class in org.gbif.api.util: This class contains utility methods for identifiers.
IdentifierUtils() - Constructor for class org.gbif.api.util.IdentifierUtils
IdentityAccessService - Interface in org.gbif.api.service.common: Identity service accessing a single user, in read-only.
IdType - Enum in org.gbif.api.vocabulary.collections: ID type for user IDs in GRSciColl contacts.
IhIrnValidator - Class in org.gbif.api.util.validators.identifierschemes
IhIrnValidator() - Constructor for class org.gbif.api.util.validators.identifierschemes.IhIrnValidator
implies(Subject) - Method in class org.gbif.api.model.common.AppPrincipal
INATURALIST_DATASET_KEY - Static variable in class org.gbif.api.model.Constants: The dataset key for the iNaturalist Research-grade Observations dataset.
increase(String) - Static method in class org.gbif.utils.text.StringUtils: Increase a given string by 1, i.e.
inferFrom(String) - Static method in enum org.gbif.api.vocabulary.IdentifierType: Tries to infer the identifier type from a given identifier.
inferType(String) - Static method in enum org.gbif.api.vocabulary.ContactType: Tries its best to infer a ContactType from a given string.
IngestionHistoryService - Interface in org.gbif.api.service.pipelines
IngestionProcess - Class in org.gbif.api.model.pipelines
IngestionProcess() - Constructor for class org.gbif.api.model.pipelines.IngestionProcess
init(Iterator<KeyValue<String, V>>) - Method in class org.gbif.common.parsers.core.DictionaryBackedParser
init(Iterator<KeyValue<String, URI>>) - Method in class org.gbif.common.parsers.LicenseUriParser
init(Reader) - Static method in class org.gbif.common.parsers.utils.BlacklistedNames
init(String) - Static method in class org.gbif.common.parsers.utils.BlacklistedNames
initialize(HttpURI) - Method in class org.gbif.api.util.URIValidator: Initializes the validator in preparation for URIValidator.isValid(URI, javax.validation.ConstraintValidatorContext) calls.
initialize(ValidEmail) - Method in class org.gbif.api.util.validators.email.EmailConstraintValidator
InPredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate: This predicate checks if its key contains any of its values.
InPredicate(S, Collection<String>, Boolean) - Constructor for class org.gbif.api.model.predicate.InPredicate
InputStreamUtils - Class in org.gbif.utils.file
InputStreamUtils() - Constructor for class org.gbif.utils.file.InputStreamUtils
insertMetadata(UUID, InputStream) - Method in interface org.gbif.api.service.registry.DatasetService: Inserts a metadata document, replacing any previously existing document of the same type.
Installation - Class in org.gbif.api.model.registry: A technical installation which can serve datasets.
Installation() - Constructor for class org.gbif.api.model.registry.Installation
INSTALLATION_TYPE_PARAM - Static variable in class org.gbif.api.model.registry.search.InstallationRequestSearchParams
InstallationPager - Class in org.gbif.api.util.iterables: Iterates over all datasets hosted by a given installation.
InstallationPager(InstallationService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.InstallationPager
InstallationRequestSearchParams - Class in org.gbif.api.model.registry.search
InstallationRequestSearchParams() - Constructor for class org.gbif.api.model.registry.search.InstallationRequestSearchParams
installations(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NodeService: Provides the installations that are registered to organizations with an approved endorsement from the node.
installations(UUID, Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService: Provides paging service to list installations for the organization.
InstallationService - Interface in org.gbif.api.service.registry
InstallationType - Enum in org.gbif.api.vocabulary: Enumeration for all possible installation types.
INSTANCE - Static variable in class org.gbif.api.util.comparators.EndpointCreatedComparator
Institution - Class in org.gbif.api.model.collections: The owner or location of collection.
Institution() - Constructor for class org.gbif.api.model.collections.Institution
institution(UUID) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
institutionalGovernance(InstitutionGovernance) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
InstitutionChangeSuggestion - Class in org.gbif.api.model.collections.suggestions
InstitutionChangeSuggestion() - Constructor for class org.gbif.api.model.collections.suggestions.InstitutionChangeSuggestion
institutionCode(String) - Method in class org.gbif.api.model.metrics.RecordError.Builder: Deprecated.
InstitutionGovernance - Enum in org.gbif.api.vocabulary.collections: Mechanisms, processes and relations by which an institution is controlled and directed.
InstitutionImportParams - Class in org.gbif.api.model.collections: Contains the parameters to create an institution from an organization.
InstitutionImportParams() - Constructor for class org.gbif.api.model.collections.InstitutionImportParams
institutionKeys(List<UUID>) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
institutionKeys(List<UUID>) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
InstitutionMatched - Class in org.gbif.api.model.collections.lookup
InstitutionMatched() - Constructor for class org.gbif.api.model.collections.lookup.InstitutionMatched
institutions(InstitutionSearchRequest, InstitutionService, Integer) - Static method in class org.gbif.api.util.iterables.Iterables: Iterable for InstitutionService.list(InstitutionSearchRequest).
InstitutionSearchRequest - Class in org.gbif.api.model.collections.request
InstitutionSearchRequest() - Constructor for class org.gbif.api.model.collections.request.InstitutionSearchRequest
InstitutionSearchRequest.Builder - Class in org.gbif.api.model.collections.request
InstitutionService - Interface in org.gbif.api.service.collections: Service for institutions in the collections context.
InstitutionsPager - Class in org.gbif.api.util.iterables: Iterates over results of InstitutionService.list(InstitutionSearchRequest).
InstitutionsPager(InstitutionService, InstitutionSearchRequest, int) - Constructor for class org.gbif.api.util.iterables.InstitutionsPager
InstitutionType - Enum in org.gbif.api.vocabulary.collections: Categorization of institutions (collection holders) types.
InternalOccurrenceSearchParameter - Enum in org.gbif.api.model.occurrence.search: Query parameters used internally (not part of the public API) to support complex data types.
InterpretationRemark - Interface in org.gbif.api.vocabulary: Represents a remark flagged during the interpretation phase.
InterpretationRemarkSeverity - Enum in org.gbif.api.vocabulary: Severity of an InterpretationRemark.
InterpretationType - Interface in org.gbif.api.model.pipelines: Enum to represent the pipelines internal interpretation type steps.
InterpretationType.RecordType - Enum in org.gbif.api.model.pipelines
InterpretedEnum<V,I extends Enum> - Class in org.gbif.api.model.common: Deprecated.
InterpretedEnum() - Constructor for class org.gbif.api.model.common.InterpretedEnum: Deprecated.
InterpretedEnum(V, I) - Constructor for class org.gbif.api.model.common.InterpretedEnum: Deprecated.
InterpretedField<V,I> - Class in org.gbif.api.model.common: Deprecated.
InterpretedField() - Constructor for class org.gbif.api.model.common.InterpretedField: Deprecated.
InterpretedField(V, I) - Constructor for class org.gbif.api.model.common.InterpretedField: Deprecated.
interpretedOccurrencesPersistedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
interpretedOccurrencesPersistedSuccessful(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
intToByteArray(int) - Static method in class org.gbif.utils.collection.ArrayUtils
IS_ENDORSED_PARAM - Static variable in class org.gbif.api.model.registry.search.OrganizationRequestSearchParams
IS_GEOREFERENCED - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
isAccepted() - Method in enum org.gbif.api.vocabulary.TaxonomicStatus
isActive() - Method in class org.gbif.api.model.collections.Collection: Is this collection currently active/maintained.
isActive() - Method in interface org.gbif.api.model.collections.CollectionEntity: Is this entity currently active/maintained.
isActive() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
isActive() - Method in class org.gbif.api.model.collections.Institution: Is the institution active/operational?.
isActive() - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
isActive() - Method in interface org.gbif.api.model.collections.lookup.EntityMatched
isAdmin() - Method in class org.gbif.api.model.common.User: Deprecated.
isAllRecordsChecked() - Method in class org.gbif.api.model.crawler.GenericValidationReport
isAllRecordsChecked() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
isAutonym() - Method in class org.gbif.api.model.checklistbank.ParsedName
isAvailable() - Method in class org.gbif.api.model.occurrence.Download
isBackboneType() - Method in enum org.gbif.api.vocabulary.NameType
isBad() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus: Opposite of good and not doubtful.
isBinomial() - Method in class org.gbif.api.model.checklistbank.ParsedName
isCellIdInBoundingBox(int, int, int) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Returns true if the supplied cell id lies in the bounding box demarcated by the min and max cell ids supplied.
isCitationProvidedBySource() - Method in class org.gbif.api.model.registry.Citation
isComplete() - Method in class org.gbif.common.parsers.date.AtomizedLocalDate: Is the resolution of this local date matches the maximum.
isCompressedFile(File) - Static method in class org.gbif.utils.file.FileUtils
isConcrete() - Method in enum org.gbif.api.vocabulary.License: Indicates if a license is a concrete license (true) or an abstracted license (false) like UNSPECIFIED or UNSUPPORTED.
isCorrectlySpelled() - Method in class org.gbif.api.model.common.search.SpellCheckResponse
isCustomCode(String) - Static method in enum org.gbif.api.vocabulary.Country
isDateRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator: Determines whether the value given is a valid date range or low precision (year, year-month) date, delimiting two values by a comma.
isDeprecated() - Method in interface org.gbif.api.vocabulary.InterpretationRemark: Checks if the InterpretationRemark is deprecated or not.
isDeprecated() - Method in enum org.gbif.api.vocabulary.NameUsageIssue
isDeprecated() - Method in enum org.gbif.api.vocabulary.OccurrenceIssue
isDisabled() - Method in class org.gbif.api.model.registry.Installation
isDisplayOnNHCPortal() - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
isDoubtful() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus
isEmpty() - Method in class org.gbif.api.model.checklistbank.TableOfContents
isEmpty() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
isEmpty() - Method in class org.gbif.utils.collection.CompactHashSet: Returns true if this set contains no elements.
isEndOfRecords() - Method in class org.gbif.api.model.common.paging.PagingResponse: Flag indicating whether more records do exist.
isEndorsementApproved() - Method in class org.gbif.api.model.registry.Organization
isExtended() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest: Allows to request an extended search object with the larger list properties: habitats nomenclaturalStatus threatStatuses descriptions vernacularNames If extended=false and highlighting is activated, the highlighted matches will still be added to the extended properties.
isExternal() - Method in class org.gbif.api.model.registry.Dataset
isExternalKey() - Method in class org.gbif.api.util.DatasetKey
isExtinct() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer: Convenience method that analyzes all species profile records for extinct.
isExtinct() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
isExtinct() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: Flag indicating an extinct organism.
isFieldDeprecated(Class<?>, String) - Static method in class org.gbif.api.util.AnnotationUtils: Check if a field is annotated with @Deprecated in the provided class.
isFieldDeprecated(Class<?>, String) - Static method in class org.gbif.utils.AnnotationUtils: Check if a field is annotated with @Deprecated in the provided class.
isFinished() - Method in class org.gbif.api.model.pipelines.PipelineExecution
isFreshwater() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer: Convenience method that analyzes all species profile records for freshwater habitat flags.
isFreshwater() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: A Boolean flag indicating whether the taxon is a freshwater organism.
isGlobalCoverage() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
isGood() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus: A vague grouping of nomenclatural status terms including all that can be used to name a correct/valid taxon.
isHighlight() - Method in class org.gbif.api.model.common.search.SearchRequest
isHybrid() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: Flag indicating a hybrid organism.
isHybridFormula() - Method in class org.gbif.api.model.checklistbank.ParsedName
isIdigbio() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
isIh() - Method in class org.gbif.api.model.collections.duplicates.Duplicate
isIndetermined() - Method in class org.gbif.api.model.checklistbank.ParsedName
isIndexHerbariorumRecord() - Method in class org.gbif.api.model.collections.Collection
isIndexHerbariorumRecord() - Method in class org.gbif.api.model.collections.Institution: Was the institution record imported form Index Herbariorum.
isInfrageneric() - Method in enum org.gbif.api.vocabulary.Rank
isInfragenericStrictly() - Method in enum org.gbif.api.vocabulary.Rank
isInfraspecific() - Method in enum org.gbif.api.vocabulary.Rank
isInfrasubspecific() - Method in enum org.gbif.api.vocabulary.Rank
isLegacy() - Method in enum org.gbif.api.vocabulary.Rank
isLinnean() - Method in enum org.gbif.api.vocabulary.Rank: True for all mayor Linnéan ranks, ie kingdom,phylum,class,order,family,genus and species.
isLockedForAutoUpdate() - Method in class org.gbif.api.model.registry.Dataset
isMarine() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer: Convenience method that analyzes all species profile records for marine habitat flags.
isMarine() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: A Boolean flag indicating whether the taxon is a marine organism, i.e.
isMatchCase() - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest: This flag enables the use of case-sensitive matches and aggregations on certain search parameters.
isMatchCase() - Method in class org.gbif.api.model.predicate.InPredicate: This flag enables the use of case-sensitive matches and aggregations on certain search parameters.
isMatchCase() - Method in class org.gbif.api.model.predicate.SimplePredicate: This flag enables the use of case-sensitive matches and aggregations on certain search parameters.
isMultiSelectFacets() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
IsniValidator - Class in org.gbif.api.util.validators.identifierschemes: Validator for ISNI numbers.
IsniValidator() - Constructor for class org.gbif.api.util.validators.identifierschemes.IsniValidator
IsNotNullPredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate
IsNotNullPredicate(S) - Constructor for class org.gbif.api.model.predicate.IsNotNullPredicate
isNub() - Method in class org.gbif.api.model.checklistbank.NameUsage
IsNullPredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate
IsNullPredicate(S) - Constructor for class org.gbif.api.model.predicate.IsNullPredicate
isNumericRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator: Determines whether the value given is a valid numeric range, delimiting two values by a comma.
ISO_DATE_FORMATTER - Static variable in class org.gbif.api.util.IsoDateParsingUtils
ISO_FORMATS - Static variable in enum org.gbif.common.parsers.date.DateComponentOrdering: ISO formats
ISO_LOCAL_DATE - Static variable in class org.gbif.common.parsers.date.DateParsers: DateTimeFormatter for ISO Year-MonthOfYear-DayOfMonth (4 digits year) This formatter does NOT handle time and timezone.
ISO_YEAR - Static variable in class org.gbif.common.parsers.date.DateParsers: DateTimeFormatter for ISO Year (4 digits)
ISO_YEAR_MONTH - Static variable in class org.gbif.common.parsers.date.DateParsers: DateTimeFormatter for ISO Year-MonthOfYear (4 digits year)
IsoDateInterval - Class in org.gbif.api.util: Represents an ISO 8601:2019 date, date-time or date/date-time interval.
IsoDateInterval() - Constructor for class org.gbif.api.util.IsoDateInterval: Create an empty DateRange.
IsoDateInterval(Temporal) - Constructor for class org.gbif.api.util.IsoDateInterval: Create a range with bounds of date.
IsoDateInterval(Temporal, Temporal) - Constructor for class org.gbif.api.util.IsoDateInterval: Create a range with bounds from and to.
IsoDateIntervalDeserializer() - Constructor for class org.gbif.api.jackson.IsoDateIntervalSerde.IsoDateIntervalDeserializer
IsoDateIntervalSerde - Class in org.gbif.api.jackson: Jackson JsonSerializer classes for IsoDateIntervals with specified formats.
IsoDateIntervalSerde() - Constructor for class org.gbif.api.jackson.IsoDateIntervalSerde
IsoDateIntervalSerde.IsoDateIntervalDeserializer - Class in org.gbif.api.jackson: Jackson JsonDeserializer for IsoDateIntervals formatted above, falling back to the Jackson way.
IsoDateIntervalSerde.IsoDateIntervalSerializer - Class in org.gbif.api.jackson: Jackson JsonSerializer for IsoDateInterval.
IsoDateIntervalSerializer() - Constructor for class org.gbif.api.jackson.IsoDateIntervalSerde.IsoDateIntervalSerializer
IsoDateParsingUtils - Class in org.gbif.api.util: Utility class that parses date values, the allowed date formats are: "yyyy-MM-dd", "yyyy-MM" or "yyyy".
IsoDateParsingUtils.IsoDateFormat - Enum in org.gbif.api.util: Enumerations with the allowed date formats by the occurrence search service.
IsoDeserializer() - Constructor for class org.gbif.api.vocabulary.Country.IsoDeserializer
isOfficial() - Method in enum org.gbif.api.vocabulary.Country: Note this includes Kosovo (XK).
IsoKeySerializer() - Constructor for class org.gbif.api.vocabulary.Language.IsoKeySerializer
isOpenAccess() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
IsoSerializer() - Constructor for class org.gbif.api.vocabulary.Country.IsoSerializer
IsoSerializer() - Constructor for class org.gbif.api.vocabulary.Language.IsoSerializer
isOutdated() - Method in class org.gbif.api.model.collections.suggestions.Change
isOverridable() - Method in class org.gbif.api.model.collections.SourceableField.Source
isOverwritten() - Method in class org.gbif.api.model.collections.suggestions.Change
isParsable(String) - Static method in class org.gbif.api.model.common.DOI: Returns true only if the source can be parsed into a DOI.
isParsable() - Method in enum org.gbif.api.vocabulary.NameType
isParsableType() - Method in class org.gbif.api.model.checklistbank.ParsedName
isParsed() - Method in class org.gbif.api.model.checklistbank.ParsedName: A flag indicating if a name could not be parsed at all.
isParsedPartially() - Method in class org.gbif.api.model.checklistbank.ParsedName: The GBIF name parser cannot always parse the entire name.
isPeerReview() - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
isPersonalCollection() - Method in class org.gbif.api.model.collections.Collection: Does this collections belong to an individual?.
isPlural() - Method in class org.gbif.api.model.checklistbank.VernacularName: This value is true if the vernacular name it qualifies refers to a plural form of the name.
isPreferred() - Method in class org.gbif.api.model.checklistbank.VernacularName: This term is true if the source citing the use of this vernacular name indicates the usage has some preference or specific standing over other possible vernacular names used for the species.
isPrimary() - Method in class org.gbif.api.model.collections.Contact
isPrimary() - Method in class org.gbif.api.model.registry.Contact
isProParte() - Method in class org.gbif.api.model.checklistbank.NameUsage: True for pro parte synonyms with multiple accepted usages.
isQualified() - Method in class org.gbif.api.model.checklistbank.ParsedName
isRecombination() - Method in class org.gbif.api.model.checklistbank.ParsedName
isRegistered() - Method in enum org.gbif.api.model.common.DoiStatus
isRestrictedToCode() - Method in enum org.gbif.api.vocabulary.Rank
isSpeciesAggregateOrBelow() - Method in enum org.gbif.api.vocabulary.Rank
isSpeciesOrBelow() - Method in enum org.gbif.api.vocabulary.Rank
isSpellCheck() - Method in class org.gbif.api.model.common.search.SearchRequest
isSuccessful() - Method in class org.gbif.common.parsers.core.ParseResult: Returns true if ParseResult.getStatus() returns SUCCESS.
ISSUE - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
isSuprageneric() - Method in enum org.gbif.api.vocabulary.Rank
isSupraspecific() - Method in enum org.gbif.api.vocabulary.Rank
isSynonym() - Method in class org.gbif.api.model.checklistbank.NameUsage: Convenience method using the taxonomicStatus field.
isSynonym() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
isSynonym() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult: Convenience method using the taxonomicStatus field.
isSynonym() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
isSynonym() - Method in class org.gbif.api.v2.NameUsageMatch2
isSynonym() - Method in enum org.gbif.api.vocabulary.TaxonomicStatus
isTerrestrial() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer: Convenience method that analyzes all species profile records for terrestrial habitat flags.
isTerrestrial() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile: A Boolean flag indicating the taxon is a terrestrial organism, i.e.
isTypeSpecimen() - Method in enum org.gbif.api.vocabulary.TypeStatus
isUncomparable() - Method in enum org.gbif.api.vocabulary.Rank: True for names of informal ranks that represent a range of ranks really and therefore cannot safely be compared to other ranks in all cases.
isValid() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
isValid() - Method in class org.gbif.api.model.crawler.GenericValidationReport
isValid() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
isValid(URI, ConstraintValidatorContext) - Method in class org.gbif.api.util.URIValidator: Implements the validation logic, checking if a URI is valid or not.
isValid(String, ConstraintValidatorContext) - Method in class org.gbif.api.util.validators.email.EmailConstraintValidator
isValid(String) - Method in class org.gbif.api.util.validators.identifierschemes.HuhValidator
isValid(String) - Method in interface org.gbif.api.util.validators.identifierschemes.IdentifierSchemeValidator: Is the identifier value valid?.
isValid(String) - Method in class org.gbif.api.util.validators.identifierschemes.IhIrnValidator
isValid(String) - Method in class org.gbif.api.util.validators.identifierschemes.IsniValidator
isValid(String) - Method in class org.gbif.api.util.validators.identifierschemes.Mod112
isValid(String) - Method in class org.gbif.api.util.validators.identifierschemes.OrcidValidator
isValid(String) - Method in class org.gbif.api.util.validators.identifierschemes.OtherValidator
isValid(String) - Method in class org.gbif.api.util.validators.identifierschemes.ResearcherIdValidator
isValid(String) - Method in class org.gbif.api.util.validators.identifierschemes.ViafValidator
isValid(String) - Method in class org.gbif.api.util.validators.identifierschemes.WikidataValidator
isValidCitesIdentifier(String) - Static method in class org.gbif.api.util.IdentifierUtils: CITES identifier validation according to https://cites.org/eng/common/reg/e_si.html.
isValidDate(String) - Method in enum org.gbif.api.util.IsoDateParsingUtils.IsoDateFormat: Checks if the parameter "value" can be parsed using the date format.
isValidWikidataIdentifier(String) - Static method in class org.gbif.api.util.IdentifierUtils
isVerbose() - Method in class org.gbif.api.model.collections.lookup.LookupParams
iterable(Iterator<T>) - Static method in class org.gbif.utils.collection.IterableUtils: Converts an interator into an Iterable for one time use only.
Iterables - Class in org.gbif.api.util.iterables: Factory constructing registry entity iterables using specific pagers under the hood.
IterableUtils - Class in org.gbif.utils.collection
IterableUtils() - Constructor for class org.gbif.utils.collection.IterableUtils
iterator() - Method in class org.gbif.api.util.iterables.BasePager
iterator() - Method in class org.gbif.utils.collection.CompactHashSet: Returns an iterator over the elements in this set.
IUCN_DATASET_KEY - Static variable in class org.gbif.api.model.Constants: The dataset key for the IUCN Red List of Threatened Species

J

joinIfNotNull(String, Object...) - Static method in class org.gbif.utils.text.StringUtils: Joins a list of objects into a string, skipping null values and calling toString on each object.

K

KeyCodeNameResult - Class in org.gbif.api.model.registry.search.collections: A utility container for holding the key, code and name of an entity.
KeyCodeNameResult() - Constructor for class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
KeyCodeNameResult(UUID, String, String) - Constructor for class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
KeyTitleResult - Class in org.gbif.api.model.registry.search: A utility container for holding only the title and key of an entity.
KeyTitleResult() - Constructor for class org.gbif.api.model.registry.search.KeyTitleResult
KeyTitleResult(UUID, String) - Constructor for class org.gbif.api.model.registry.search.KeyTitleResult
KeyValue<K,V> - Class in org.gbif.common.parsers.core: Simple container object.
KeyValue(K, V) - Constructor for class org.gbif.common.parsers.core.KeyValue
KeywordCollection - Class in org.gbif.api.model.registry.eml: Allows a collection of keywords which may declare a thesaurus from which they come from.
KeywordCollection() - Constructor for class org.gbif.api.model.registry.eml.KeywordCollection
KeywordCollection(String, Set<String>) - Constructor for class org.gbif.api.model.registry.eml.KeywordCollection
Keywords - Interface in org.gbif.api.model.registry.eml
Kingdom - Enum in org.gbif.api.vocabulary: A simple enumeration of all kingdoms found in the GBIF Backbone Taxonomy and also Catalogue of Life.
KingdomParser - Class in org.gbif.common.parsers

L

Language - Enum in org.gbif.api.vocabulary: Enumeration for all ISO 639-1 language codes using 2 lower case letters.
Language.IsoKeySerializer - Class in org.gbif.api.vocabulary
Language.IsoSerializer - Class in org.gbif.api.vocabulary: Serializes the value in a 3 letter ISO format.
Language.LenientDeserializer - Class in org.gbif.api.vocabulary: Deserializes the value from a 3 letter ISO format or the enumeration name itself to maintain as much backwards compatibility as possible with e.g.
Language.LenientKeyDeserializer - Class in org.gbif.api.vocabulary
LanguageParser - Class in org.gbif.common.parsers: Singleton implementation of the case insensitive ISO 639-1 language dictionary that uses the org.gbif.common.api.Language enumeration.
LANGUAGES - Static variable in enum org.gbif.api.vocabulary.Language
LAT_DEGREE_IN_METER - Static variable in class org.gbif.api.util.LengthUtils
latDegreeToMeters(double) - Static method in class org.gbif.api.util.LengthUtils: Latitude degrees are roughly linear to meters on the earth spheroid.
latestDate(String) - Method in enum org.gbif.api.util.IsoDateParsingUtils.IsoDateFormat: Returns the latest date of a possible open range, e.g.
LatLng - Class in org.gbif.common.parsers.geospatial: Simple container class for an interpreted coordinate.
LatLng(double, double) - Constructor for class org.gbif.common.parsers.geospatial.LatLng
LatLng() - Constructor for class org.gbif.common.parsers.geospatial.LatLng
LatLngBoundingBox - Class in org.gbif.common.parsers.geospatial: A bounding box for lat long.
LatLngBoundingBox(double, double, double, double) - Constructor for class org.gbif.common.parsers.geospatial.LatLngBoundingBox: Force the box to be well formed
LengthUtils - Class in org.gbif.api.util
LengthUtils() - Constructor for class org.gbif.api.util.LengthUtils
LenientDeserializer() - Constructor for class org.gbif.api.vocabulary.Language.LenientDeserializer
lenientEquals(Address) - Method in class org.gbif.api.model.collections.Address
lenientEquals(Collection) - Method in class org.gbif.api.model.collections.Collection
lenientEquals(Contact) - Method in class org.gbif.api.model.collections.Contact
lenientEquals(Institution) - Method in class org.gbif.api.model.collections.Institution
lenientEquals(OccurrenceMapping) - Method in class org.gbif.api.model.collections.OccurrenceMapping
lenientEquals(PipelineStep) - Method in class org.gbif.api.model.pipelines.PipelineStep
lenientEquals(Comment) - Method in class org.gbif.api.model.registry.Comment: A lenient equality check ignoring server side fields.
lenientEquals(Contact) - Method in class org.gbif.api.model.registry.Contact: This implementation of the Contact.equals(Object) method does only check business equality and disregards automatically set and maintained fields like createdBy, key and others.
lenientEquals(Dataset) - Method in class org.gbif.api.model.registry.Dataset: Only checks the persisted properties, excluding the server controlled fields (key, created, license etc).
lenientEquals(Endpoint) - Method in class org.gbif.api.model.registry.Endpoint: Does not include server controlled values, or nested properties.
lenientEquals(Identifier) - Method in class org.gbif.api.model.registry.Identifier: A lenient equality check ignoring server controlled values (createdBy, key etc).
lenientEquals(Installation) - Method in class org.gbif.api.model.registry.Installation: Does not include the nested properties, or server controlled values (key, createdBy etc) or the password, for security reasons.
LenientEquals<T> - Interface in org.gbif.api.model.registry: An interface to allow model objects to offer a consistent lenient equality check.
lenientEquals(T) - Method in interface org.gbif.api.model.registry.LenientEquals: Leniently tests if the objects are the same.
lenientEquals(MachineTag) - Method in class org.gbif.api.model.registry.MachineTag: This implementation of the MachineTag.equals(Object) method does only check business equality and disregards automatically set and maintained fields like createdBy, key and possibly others in the future.
lenientEquals(Metadata) - Method in class org.gbif.api.model.registry.Metadata: Does not include the key or server controlled values (created, createdBy etc).
lenientEquals(Network) - Method in class org.gbif.api.model.registry.Network: Tests persisted fields, excluding the server controlled values such as key and createdBy.
lenientEquals(Node) - Method in class org.gbif.api.model.registry.Node: Compares the entities for business logic equality using a very lenient approach.
lenientEquals(Organization) - Method in class org.gbif.api.model.registry.Organization: A lenient equality check for business logic uniqueness.
lenientEquals(Tag) - Method in class org.gbif.api.model.registry.Tag: A lenient test that returns true if they are the same object or have the same value.
lenientEquals(T, T) - Static method in class org.gbif.api.util.LenientEqualsUtils
LenientEqualsUtils - Class in org.gbif.api.util
LenientKeyDeserializer() - Constructor for class org.gbif.api.vocabulary.Language.LenientKeyDeserializer
LessThanOrEqualsPredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate: This predicate checks if its key is less or equal than its value.
LessThanOrEqualsPredicate(S, String) - Constructor for class org.gbif.api.model.predicate.LessThanOrEqualsPredicate
LessThanPredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate: This predicate checks if its key is less than its value.
LessThanPredicate(S, String) - Constructor for class org.gbif.api.model.predicate.LessThanPredicate
License - Enum in org.gbif.api.vocabulary: Enumeration of the set of licenses GBIF supports for applying to a dataset.
LicenseJsonDeserializer() - Constructor for class org.gbif.api.jackson.LicenseSerde.LicenseJsonDeserializer
LicenseJsonSerializer() - Constructor for class org.gbif.api.jackson.LicenseSerde.LicenseJsonSerializer
LicenseMixin - Interface in org.gbif.api.ws.mixin: Mixin interface used to serialize license enums into urls.
LicenseParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/license.txt to lookup a License by its URI or its acronym/title, e.g.
LicenseSerde - Class in org.gbif.api.jackson: Jackson JsonSerializer and Jackson JsonDeserializer classes for License.
LicenseSerde() - Constructor for class org.gbif.api.jackson.LicenseSerde
LicenseSerde.LicenseJsonDeserializer - Class in org.gbif.api.jackson: Jackson JsonDeserializer for License.
LicenseSerde.LicenseJsonSerializer - Class in org.gbif.api.jackson: Jackson JsonSerializer for License.
LicenseUriParser - Class in org.gbif.common.parsers: A license parser giving URIs, compared to License which is for our GBIF enumeration.
LifeStage - Enum in org.gbif.api.vocabulary: Deprecated.
LifeStageParser - Class in org.gbif.common.parsers: Deprecated.
replaced by the vocabulary server https://github.com/gbif/vocabulary.
LikePredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate: This predicate checks if its key is LIKE its value.
LikePredicate(S, String, Boolean) - Constructor for class org.gbif.api.model.predicate.LikePredicate
limitToResolution(TemporalAccessor, int) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils
limitToResolution(Temporal, int) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils
Lineage - Class in org.gbif.api.model.event: Lineage class to represent relations between events.
Lineage() - Constructor for class org.gbif.api.model.event.Lineage
LineComparator - Class in org.gbif.utils.text: A comparator for delimited lines that compares the content of a given column number for all rows.
LineComparator(int, String) - Constructor for class org.gbif.utils.text.LineComparator
LineComparator(int, String, Character) - Constructor for class org.gbif.utils.text.LineComparator
LineComparator(int, String, Character, Comparator<String>) - Constructor for class org.gbif.utils.text.LineComparator
LineComparator(int, String, Comparator<String>) - Constructor for class org.gbif.utils.text.LineComparator
LINNEAN_RANKS - Static variable in enum org.gbif.api.vocabulary.Rank: All main Linnean ranks ordered.
LINNEAN_YEAR - Static variable in class org.gbif.utils.text.StringUtils
LinneanClassification - Interface in org.gbif.api.model.common: A flat taxonomic classification using the major, Linnean ranks with verbatim names.
LinneanClassificationKeys - Interface in org.gbif.api.model.common: A flat taxonomic classification using the major, Linnean ranks with verbatim names and integer based keys.
list(UUID) - Method in interface org.gbif.api.service.checklistbank.DatasetMetricsService
list(Locale, UUID, String, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Page through all usages across all or one checklists.
list(Status, Type, String, UUID, Pageable) - Method in interface org.gbif.api.service.collections.ChangeSuggestionService
list(CollectionSearchRequest) - Method in interface org.gbif.api.service.collections.CollectionService: Pages Collection entities based on the parameters received.
list(InstitutionSearchRequest) - Method in interface org.gbif.api.service.collections.InstitutionService: Pages Institution entities based on the parameters received.
list(Pageable) - Method in interface org.gbif.api.service.common.CrudService: Lists all entity.
list(DatasetRequestSearchParams) - Method in interface org.gbif.api.service.registry.DatasetService: Provides paging service to list datasets that can be filtered by multiple parameters.
list(InstallationRequestSearchParams) - Method in interface org.gbif.api.service.registry.InstallationService: Provides paging service to list installations that can be filtered by multiple parameters.
list(Pageable) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Deprecated.
list(NetworkRequestSearchParams) - Method in interface org.gbif.api.service.registry.NetworkService: Provides paging service to list networks that can be filtered by multiple parameters.
list(NodeRequestSearchParams) - Method in interface org.gbif.api.service.registry.NodeService: Provides paging service to list nodes that can be filtered by multiple parameters.
list(Pageable, Set<Download.Status>, String) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves a pageable result of all the downloads, optionally the downloads can be filtered by status and source.
list(OrganizationRequestSearchParams) - Method in interface org.gbif.api.service.registry.OrganizationService: Provides paging service to list organizations that can be filtered by multiple parameters.
list(MachineTaggable, TagNamespace) - Static method in class org.gbif.api.util.MachineTagUtils
list(MachineTaggable, TagName) - Static method in class org.gbif.api.util.MachineTagUtils
list(MachineTaggable, String, String) - Static method in class org.gbif.api.util.MachineTagUtils
list(Class, String) - Static method in class org.gbif.utils.file.ResourcesUtil: List directory contents for a resource folder.
listAbortedDatasetProcesses(Pageable) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService: Retrieves a pageable result of all dataset processing statuses that have been aborted in their latest crawl
listActiveCountries() - Method in interface org.gbif.api.service.registry.NodeService: Returns those countries considered active in GBIF.
listByCanonicalName(Locale, String, Pageable, UUID...) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Page through all usages with a given canonical name across all or some checklists.
listByCountry(Country, DatasetType, Pageable) - Method in interface org.gbif.api.service.registry.DatasetService: Provides paging service to list datasets published, i.e.
listByCountry(Country, Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService: Provides access to all organizations from a country.
listByDataset(UUID, Boolean, Pageable) - Method in interface org.gbif.api.service.registry.DatasetOccurrenceDownloadUsageService: Retrieves a pageable result of the downloads which contain data taken from a dataset.
listByDOI(String, Pageable) - Method in interface org.gbif.api.service.registry.DatasetService: Get a Dataset list from a DOI.
listByEraseAfter(Pageable, String, Long, String) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves a pageable result of the downloads created by a user in a given status.
listByIdentifier(IdentifierType, String, Pageable) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Deprecated.
listByIdentifier(String, Pageable) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Deprecated.
listByMachineTag(String, String, String, Pageable) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Deprecated.
listByPrefix(MachineTaggable, String, String) - Static method in class org.gbif.api.util.MachineTagUtils
listByType(DatasetType, Pageable) - Method in interface org.gbif.api.service.registry.DatasetService: Provides paging service to list datasets published filtered by a particular dataset type.
listByType(InstallationType, Pageable) - Method in interface org.gbif.api.service.registry.InstallationService: Provides paging service to list installations filtered by a particular installation type.
listByUsage(int, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageExtensionService: Returns all extension records for a checklist usage.
listByUser(String, Pageable, Set<Download.Status>, LocalDateTime, Boolean) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves a pageable result of the downloads created by a user in a given status.
listChildren(int, Locale, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Lists all accepted child name usages for a given parent.
listCombinations(int, Locale) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Lists all combinations or names at different rank that are based on this basionym, i.e.
listComments(UUID) - Method in interface org.gbif.api.service.registry.CommentService: List all comments of a target entity.
listConstituents(UUID, Pageable) - Method in interface org.gbif.api.service.registry.DatasetService: Pages through constituents of a dataset, i.e.
listConstituents(Pageable) - Method in interface org.gbif.api.service.registry.DatasetService: Pages through all constituent datasets, i.e.
listConstituents(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NetworkService: Pages through dataset constituents of a network, i.e.
listContactPersons(UUID) - Method in interface org.gbif.api.service.collections.ContactService: Lists all the contacts of an entity.
listContacts(UUID) - Method in interface org.gbif.api.service.registry.ContactService: List all contacts of a target entity.
listCountryUsages(String, CountryUsageSortField, SortOrder, Pageable) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService
listDatasetProcessStatus(Pageable) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService: Retrieves a pageable result of all the dataset processing statuses.
listDatasetProcessStatus(UUID, Pageable) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService: Lists the DatasetProcessStatus of a dataset.
listDatasetsWithNoEndpoint(Pageable) - Method in interface org.gbif.api.service.registry.DatasetService: Provides access to internal (e.g.
listDatasetUsages(String, Pageable) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Retrieves a pageable result of the dataset usages in a occurrence download.
listDatasetUsages(String, String, DatasetUsageSortField, SortOrder, Pageable) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService
listDeleted(CollectionSearchRequest) - Method in interface org.gbif.api.service.collections.CollectionService: Provides access to deleted collections.
listDeleted(InstitutionSearchRequest) - Method in interface org.gbif.api.service.collections.InstitutionService: Provides access to deleted institutions.
listDeleted(DatasetRequestSearchParams) - Method in interface org.gbif.api.service.registry.DatasetService: Provides access to deleted datasets.
listDeleted(InstallationRequestSearchParams) - Method in interface org.gbif.api.service.registry.InstallationService: Provides access to deleted installations.
listDeleted(OrganizationRequestSearchParams) - Method in interface org.gbif.api.service.registry.OrganizationService: Provides access to deleted organizations.
listDuplicates(Pageable) - Method in interface org.gbif.api.service.registry.DatasetService: Provides access to datasets that are marked as a duplicate of another.
listEndpoints(UUID) - Method in interface org.gbif.api.service.registry.EndpointService: List all endpoints of a target entity.
listGeojson(InstitutionSearchRequest) - Method in interface org.gbif.api.service.collections.InstitutionService: Lists the institutions in GeoJson format.
listGrids(UUID) - Method in interface org.gbif.api.service.registry.DatasetService: Get gridded datasets processing info
listIdentifiers(UUID) - Method in interface org.gbif.api.service.registry.IdentifierService: List all identifiers of a target entity.
listLanguages() - Method in class org.gbif.api.model.checklistbank.TableOfContents
listMachineTags(UUID) - Method in interface org.gbif.api.service.registry.MachineTagService: List all machine tags of the entity.
listMetadata(UUID, MetadataType) - Method in interface org.gbif.api.service.registry.DatasetService: Lists all metadata descriptions available for a dataset and optionally filters them by document type.
listMetasync(Pageable) - Method in interface org.gbif.api.service.registry.MetasyncHistoryService: Retrieves a pageable result of all the metasync history records.
listMetasync(UUID, Pageable) - Method in interface org.gbif.api.service.registry.MetasyncHistoryService: Lists the MetasyncHistory of a installation.
listNetworks(UUID) - Method in interface org.gbif.api.service.registry.DatasetService: Lists all networks that this dataset is a constituent of.
listNodeCountries() - Method in interface org.gbif.api.service.registry.NodeService: Returns a list of all countries which do have a GBIF node.
listNonPublishing(Pageable) - Method in interface org.gbif.api.service.registry.InstallationService: Provides access to installations that serve no datasets.
listNonPublishing(Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService: Provides access to organizations that are not publishing (e.g.
listOccurrenceMappings(UUID) - Method in interface org.gbif.api.service.collections.OccurrenceMappingService: List all OccurrenceMapping of a target entity.
listOrganizationUsages(String, String, OrganizationUsageSortField, SortOrder, Pageable) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService
listParents(int, Locale) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Lists the complete parental hierarchy of a name usage regardless of their ranks.
listPendingEndorsement(Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService: Provides access to organizations that are awaiting their endorsement approval.
listRelated(int, Locale, Pageable, UUID...) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Lists all related checklist usages for a given nub usage.
listRoot(UUID, Locale, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Lists all root usages for a given checklist, i.e.
listSynonyms(int, Locale, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageService: Lists all synonym name usages for a given accepted name usage.
listTags(UUID, String) - Method in interface org.gbif.api.service.registry.TagService: List all tags of a tagged entity.
listTopicEntries(Language) - Method in class org.gbif.api.model.checklistbank.TableOfContents
LiteratureRelevance - Enum in org.gbif.api.model.literature
LiteratureSearchParameter - Enum in org.gbif.api.model.literature.search
LiteratureSearchRequest - Class in org.gbif.api.model.literature.search
LiteratureSearchRequest() - Constructor for class org.gbif.api.model.literature.search.LiteratureSearchRequest
LiteratureSearchRequest(Pageable) - Constructor for class org.gbif.api.model.literature.search.LiteratureSearchRequest
LiteratureSearchRequest(long, int) - Constructor for class org.gbif.api.model.literature.search.LiteratureSearchRequest
LiteratureSearchResult - Class in org.gbif.api.model.literature.search
LiteratureSearchResult() - Constructor for class org.gbif.api.model.literature.search.LiteratureSearchResult
LiteratureTopic - Enum in org.gbif.api.model.literature
LiteratureType - Enum in org.gbif.api.model.literature
loadProperties(String) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Loads a properties file.
LocalDateTimeDeserializer() - Constructor for class org.gbif.api.jackson.LocalDateTimeSerDe.LocalDateTimeDeserializer
LocalDateTimeSerDe - Class in org.gbif.api.jackson: Jackson JsonSerializer and Jackson JsonDeserializer classes for LocalDateTime.
LocalDateTimeSerDe() - Constructor for class org.gbif.api.jackson.LocalDateTimeSerDe
LocalDateTimeSerDe.LocalDateTimeDeserializer - Class in org.gbif.api.jackson: Jackson JsonDeserializer for LocalDateTime.
LocalDateTimeSerDe.LocalDateTimeSerializer - Class in org.gbif.api.jackson: Jackson JsonSerializer for LocalDateTime.
LocalDateTimeSerializer() - Constructor for class org.gbif.api.jackson.LocalDateTimeSerDe.LocalDateTimeSerializer
lookup(String, Class<T>) - Static method in class org.gbif.api.util.VocabularyUtils: Same as VocabularyUtils.lookupEnum(String, Class) } without IllegalArgumentException.
lookupEnum(String, Class<T>) - Static method in class org.gbif.api.util.VocabularyUtils: Generic method to lookup an enumeration value for a given string based on the name of the enum member.
LookupParams - Class in org.gbif.api.model.collections.lookup: Holds the parameters that the collections lookup accepts.
LookupParams() - Constructor for class org.gbif.api.model.collections.lookup.LookupParams
LookupResult - Class in org.gbif.api.model.collections.lookup: Result of a collections lookup that contains the institution and collections matches found.
LookupResult() - Constructor for class org.gbif.api.model.collections.lookup.LookupResult
lookupVocabulary(String) - Static method in class org.gbif.api.util.VocabularyUtils: Looks up an enumeration by class name.
lowerEndpoint() - Method in class org.gbif.api.util.Range
lowerOf(ParseResult.CONFIDENCE, ParseResult.CONFIDENCE) - Static method in enum org.gbif.common.parsers.core.ParseResult.CONFIDENCE

M

MACHINE_TAG_NAME_PARAM - Static variable in class org.gbif.api.model.registry.search.RequestSearchParams
MACHINE_TAG_NAMESPACE_PARAM - Static variable in class org.gbif.api.model.registry.search.RequestSearchParams
MACHINE_TAG_VALUE_PARAM - Static variable in class org.gbif.api.model.registry.search.RequestSearchParams
MachineTag - Class in org.gbif.api.model.registry: A tag that has a namespace, name and a value.
MachineTag() - Constructor for class org.gbif.api.model.registry.MachineTag
MachineTag(String, String, String) - Constructor for class org.gbif.api.model.registry.MachineTag: This is the default constructor to create new Machine Tags which takes all user settable properties.
MachineTag(TagName, String) - Constructor for class org.gbif.api.model.registry.MachineTag: This is the other constructor to create new Machine Tags which takes all user settable properties.
MachineTaggable - Interface in org.gbif.api.model.registry: Generic machine tag interface for entities.
machineTagName(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
machineTagName(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
machineTagNamespace(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
machineTagNamespace(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
MachineTagService - Interface in org.gbif.api.service.registry: Service provides a set of operations on MachineTag.
MachineTagUtils - Class in org.gbif.api.util: Utility class to simplify your life when dealing with machine tags.
machineTagValue(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
machineTagValue(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
main(String[]) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: For ease of conversion
MaintenanceUpdateFrequency - Enum in org.gbif.api.vocabulary: Enumeration for describing the frequency with which changes and additions are made to the dataset after the initial dataset is completed.
MaintenanceUpdateFrequencyParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/maintenanceUpdateFrequency.txt.
MapEntryJsonDeserializer() - Constructor for class org.gbif.api.jackson.MapEntrySerde.MapEntryJsonDeserializer: Deprecated.
MapEntryJsonSerializer() - Constructor for class org.gbif.api.jackson.MapEntrySerde.MapEntryJsonSerializer: Deprecated.
MapEntrySerde - Class in org.gbif.api.jackson: Deprecated.
MapEntrySerde() - Constructor for class org.gbif.api.jackson.MapEntrySerde: Deprecated.
MapEntrySerde.MapEntryJsonDeserializer - Class in org.gbif.api.jackson: Deprecated.
MapEntrySerde.MapEntryJsonSerializer - Class in org.gbif.api.jackson: Deprecated.
MapUtils - Class in org.gbif.utils.collection
markAllPipelineExecutionAsFinished() - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Mark all pipeline executions as finished to clean running UI
markPipelineExecutionIfFinished(long) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Mark pipeline execution as finished when all pipelin steps are finished
markPipelineStatusAsAborted(long) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Change status to ABORTED and set finished date if state is RUNNING, QUEUED or SUBMITTED, and set pipeline execution as finished
MasterSourceMetadata - Class in org.gbif.api.model.collections: Metadata to sync GRSciColl entities with their master sources.
MasterSourceMetadata() - Constructor for class org.gbif.api.model.collections.MasterSourceMetadata
MasterSourceMetadata(Source, String) - Constructor for class org.gbif.api.model.collections.MasterSourceMetadata
masterSourceType(MasterSourceType) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
masterSourceType(MasterSourceType) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
MasterSourceType - Enum in org.gbif.api.vocabulary.collections: Type of GRSciColl master source.
Match<T extends EntityMatched> - Class in org.gbif.api.model.collections.lookup: Used in the LookupResult to express how good an entity matches.
Match() - Constructor for class org.gbif.api.model.collections.lookup.Match
Match() - Constructor for class org.gbif.api.model.collections.search.CollectionsSearchResponse.Match
match(String, Rank, LinneanClassification, boolean, boolean) - Method in interface org.gbif.api.service.checklistbank.NameUsageMatchingService: Tries to match a scientific name with an optional classification given as individual parameters.
Match.MatchType - Enum in org.gbif.api.model.collections.lookup
Match.Reason - Enum in org.gbif.api.model.collections.lookup
Match.Status - Enum in org.gbif.api.model.collections.lookup
MATCH_TYPE_COMPARATOR - Static variable in class org.gbif.api.model.collections.lookup.Match
mDiscarded() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearMonthDay
MDY_FORMATS - Static variable in enum org.gbif.common.parsers.date.DateComponentOrdering: Month-Day-Year formats, primarily used in the USA
MeasurementOrFact - Class in org.gbif.api.model.occurrence: A measurement or fact about an occurrence.
MeasurementOrFact() - Constructor for class org.gbif.api.model.occurrence.MeasurementOrFact
MediaObject - Class in org.gbif.api.model.common: Metadata for a multimedia object representing an image, video or audio file.
MediaObject() - Constructor for class org.gbif.api.model.common.MediaObject
MediaParser - Class in org.gbif.common.parsers
MediaParser() - Constructor for class org.gbif.common.parsers.MediaParser
MediaType - Enum in org.gbif.api.vocabulary: Based on the DC types vocabulary.
MediaTypeParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/media_type.txt.
MergeParams - Class in org.gbif.api.model.collections.merge
MergeParams() - Constructor for class org.gbif.api.model.collections.merge.MergeParams
mergeSortedFiles(List<File>, Writer, Comparator<String>) - Method in class org.gbif.utils.file.FileUtils: Merges a list of intermediary sort chunk files into a single sorted file.
message(String) - Method in class org.gbif.api.model.common.messaging.Response.Builder
messageKey(String) - Method in class org.gbif.api.model.common.messaging.Response.Builder
Metadata - Class in org.gbif.api.model.registry
Metadata() - Constructor for class org.gbif.api.model.registry.Metadata
MetadataType - Enum in org.gbif.api.vocabulary: Enumeration for all possible metadata types.
MetasyncHistory - Class in org.gbif.api.model.registry.metasync: Metadata synchronization historical information.
MetasyncHistory() - Constructor for class org.gbif.api.model.registry.metasync.MetasyncHistory
MetasyncHistoryService - Interface in org.gbif.api.service.registry: Interface to access and persists historical metadata synchronization results.
MetasyncResult - Enum in org.gbif.api.model.registry.metasync: Enumeration of all the different categories of results we want to report on during metadata synchronisation.
MeterRangeParser - Class in org.gbif.common.parsers.geospatial: Utilities for parsing min/max meter measurements in general plus specific additions and validations for elevation, depth and distance above surface.
MeterRangeParser() - Constructor for class org.gbif.common.parsers.geospatial.MeterRangeParser
metersToLatDegree(double) - Static method in class org.gbif.api.util.LengthUtils: Latitude degrees are roughly linear to meters on the earth spheroid.
MetricInfo() - Constructor for class org.gbif.api.model.pipelines.PipelineStep.MetricInfo
MetricInfo(String, String) - Constructor for class org.gbif.api.model.pipelines.PipelineStep.MetricInfo
Mixins - Class in org.gbif.api.ws.mixin: Mixins are typically used to leave serialization-oriented annotations outside the models to avoid introducing coupling on a specific SerDe.
Mod112 - Class in org.gbif.api.util.validators.identifierschemes: Util class that generates a validates Mod11,2 checksums.
MODIFIED_PARAM - Static variable in class org.gbif.api.model.registry.search.RequestSearchParams
monthNameToNumerical(String) - Method in class org.gbif.common.parsers.date.DatePartsNormalizer: Often months come in the form Sept.
MultiinputTemporalParser - Class in org.gbif.common.parsers.date: A date parser accepting multiple dates, and returning a common interpretation of them.
MultimediaService - Interface in org.gbif.api.service.checklistbank: The public interface providing methods for retrieving NameUsageMediaObjects.
MultipleParseResult(int, List<String>, TemporalAccessor, List<TemporalAccessor>) - Constructor for class org.gbif.common.parsers.date.DateTimeMultiParser.MultipleParseResult

N

name - Variable in exception org.gbif.api.exception.UnparsableException
name(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
name(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
name() - Method in interface org.gbif.api.model.common.search.SearchParameter
name() - Method in interface org.gbif.api.model.pipelines.InterpretationType
name - Variable in class org.gbif.utils.text.EmailUtils.EmailWithName
NamedThreadFactory - Class in org.gbif.utils.concurrent: Modified Executors DefaultThreadFactory to allow custom named thread pools.
NamedThreadFactory(String) - Constructor for class org.gbif.utils.concurrent.NamedThreadFactory: Creates a new named user thread factory using a normal priority.
NamedThreadFactory(String, int, boolean) - Constructor for class org.gbif.utils.concurrent.NamedThreadFactory: Creates a new named thread factory using explicit priority and daemon settings.
NameParser - Interface in org.gbif.api.service.checklistbank: Interface for parsing scientific names.
NameParserGbifV1 - Class in org.gbif.nameparser: A name parser wrapped to return classic ParsedName objects from the GBIF API v1.
NameParserGbifV1() - Constructor for class org.gbif.nameparser.NameParserGbifV1: Using the default GBIF RegEx Name Parser.
NameParserGbifV1(long) - Constructor for class org.gbif.nameparser.NameParserGbifV1: Using the default GBIF RegEx Name Parser with a given timeout for parsing a single name.
NameParserGbifV1(NameParserGBIF) - Constructor for class org.gbif.nameparser.NameParserGbifV1
NameParserUtils - Class in org.gbif.common.parsers.utils: Mostly a singleton name parser to be shared.
NameParserUtils() - Constructor for class org.gbif.common.parsers.utils.NameParserUtils
NamePart - Enum in org.gbif.api.vocabulary: Enumeration to indicate a part of a canonical scientific name.
NameType - Enum in org.gbif.api.vocabulary: A short classification of scientific name strings used in Checklist Bank.
nameTypeStatusList() - Static method in enum org.gbif.api.vocabulary.TypeStatus
NameUsage - Class in org.gbif.api.model.checklistbank: A usage of a scientific name according to one particular Checklist including the GBIF Taxonomic Backbone, the NUB.
NameUsage() - Constructor for class org.gbif.api.model.checklistbank.NameUsage
NameUsage(NameUsage) - Constructor for class org.gbif.api.model.checklistbank.NameUsage
NameUsageContainer - Class in org.gbif.api.model.checklistbank: An extension to a NameUsage adding all further properties that are not eagerly loaded.
NameUsageContainer() - Constructor for class org.gbif.api.model.checklistbank.NameUsageContainer: Default constructor.
NameUsageContainer(NameUsage) - Constructor for class org.gbif.api.model.checklistbank.NameUsageContainer: Constructs a NameUsageContainer from an existing NameUsage instance.
NameUsageExtension - Interface in org.gbif.api.model.checklistbank
NameUsageExtensionService<T> - Interface in org.gbif.api.service.checklistbank: Parameterized service interface for model classes extending a NameUsage.
NameUsageIssue - Enum in org.gbif.api.vocabulary: Enumeration of issues for each name usage record encountered during checklist processing.
NameUsageMatch - Class in org.gbif.api.model.checklistbank: The resulting lookup of a name usage match.
NameUsageMatch() - Constructor for class org.gbif.api.model.checklistbank.NameUsageMatch
NameUsageMatch.MatchType - Enum in org.gbif.api.model.checklistbank
NameUsageMatch2 - Class in org.gbif.api.v2: NameUsageMatch for API v2 See https://github.com/gbif/checklistbank/issues/49
NameUsageMatch2() - Constructor for class org.gbif.api.v2.NameUsageMatch2
NameUsageMatch2.Diagnostics - Class in org.gbif.api.v2
NameUsageMatch2.Nomenclature - Class in org.gbif.api.v2
NameUsageMatchingService - Interface in org.gbif.api.service.checklistbank: A lookup service that fuzzy matches classified scientific names against a body of names.
NameUsageMediaObject - Class in org.gbif.api.model.checklistbank: An extension to the common MediaObject that adds a source taxon key property from checklistbank.
NameUsageMediaObject() - Constructor for class org.gbif.api.model.checklistbank.NameUsageMediaObject
NameUsageMetrics - Class in org.gbif.api.model.checklistbank: Basic metrics for a single name usage.
NameUsageMetrics() - Constructor for class org.gbif.api.model.checklistbank.NameUsageMetrics
NameUsageSearchParameter - Enum in org.gbif.api.model.checklistbank.search: Each value in the enum represents a search parameter or facet of the name usage search.
NameUsageSearchRequest - Class in org.gbif.api.model.checklistbank.search: A name usage specific search request with convenience methods to add enum based search filters.
NameUsageSearchRequest() - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
NameUsageSearchRequest(Pageable) - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
NameUsageSearchRequest(long, int) - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
NameUsageSearchRequest.NameUsageQueryField - Enum in org.gbif.api.model.checklistbank.search
NameUsageSearchResult - Class in org.gbif.api.model.checklistbank.search: Class used for returning results of a full text search operation.
NameUsageSearchResult() - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
NameUsageSearchService - Interface in org.gbif.api.service.checklistbank: Interface that provides search/suggest(autocomplete) operations over NameUsages.
NameUsageService - Interface in org.gbif.api.service.checklistbank: This is the public interface providing methods for retrieving name usages in general, no matter if nub or checklist usage.
NameUsageSuggestRequest - Class in org.gbif.api.model.checklistbank.search: A name usage specific suggest request.
NameUsageSuggestRequest() - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSuggestRequest
NameUsageSuggestResult - Class in org.gbif.api.model.checklistbank.search: Class used for returning results of a suggest operation.
NameUsageSuggestResult() - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
Network - Class in org.gbif.api.model.registry: A GBIF network.
Network() - Constructor for class org.gbif.api.model.registry.Network
NETWORK_KEY_PARAM - Static variable in class org.gbif.api.model.registry.search.OrganizationRequestSearchParams
networkDatasets(UUID, DatasetType, NetworkService) - Static method in class org.gbif.api.util.iterables.Iterables: Iterates over all constituents of a given network.
NetworkEntity - Interface in org.gbif.api.model.registry: This interface provides a minimal contract that all network entities (The readable version) will adhere to.
NetworkEntityService<T> - Interface in org.gbif.api.service.registry
NetworkMixin - Interface in org.gbif.api.ws.mixin
NetworkPager - Class in org.gbif.api.util.iterables: Iterates over all datasets belonging to a given network.
NetworkPager(NetworkService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.NetworkPager
NetworkRequestSearchParams - Class in org.gbif.api.model.registry.search
NetworkRequestSearchParams() - Constructor for class org.gbif.api.model.registry.search.NetworkRequestSearchParams
NetworkService - Interface in org.gbif.api.service.registry
newInstance(String, String, String) - Static method in class org.gbif.api.model.registry.MachineTag
newInstance(TagName, String) - Static method in class org.gbif.api.model.registry.MachineTag
newInstance() - Static method in class org.gbif.common.parsers.date.DatePartsNormalizer
newInstance() - Static method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer
newMultiParserListBuilder() - Static method in class org.gbif.common.parsers.date.DateTimeParserBuilder: Get a new builder to create a list of DateTimeMultiParser.
newParserListBuilder() - Static method in class org.gbif.common.parsers.date.DateTimeParserBuilder: Get a new builder to create a list of DateTimeParser.
newRandom() - Static method in class org.gbif.api.model.ChallengeCode
newRandom(String) - Static method in class org.gbif.api.model.ChallengeCode
newTabularFileReader(Reader, char, String, Character, boolean) - Static method in class org.gbif.utils.file.tabular.TabularFiles: Get a new TabularDataFileReader.
newTabularFileReader(Reader, char, String, Character, boolean, Integer) - Static method in class org.gbif.utils.file.tabular.TabularFiles: Get a new TabularDataFileReader.
newTabularFileReader(Reader, char, boolean) - Static method in class org.gbif.utils.file.tabular.TabularFiles: Get a new TabularDataFileReader using default quote char (") and default endOfLineSymbols (\n).
newThread(Runnable) - Method in class org.gbif.utils.concurrent.NamedThreadFactory
next() - Method in class org.gbif.utils.file.csv.CSVReader
nextPage() - Method in class org.gbif.api.model.common.paging.PagingRequest: Increases the offset based on the current limit to be able to request the next page.
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.BasePager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.CollectionsPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.DatasetConstituentPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.DatasetOccurrenceDownloadUsagesPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.DatasetPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.DatasetSearchResultsPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.DownloadStatisticPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.InstallationPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.InstitutionsPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.NetworkPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.NodeDatasetPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.NodeOrganizationPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.NodePager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.OrganizationPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.OrgHostingPager
nextPage(PagingRequest) - Method in class org.gbif.api.util.iterables.OrgPublishingPager
Node - Class in org.gbif.api.model.registry: A GBIF participant node.
Node() - Constructor for class org.gbif.api.model.registry.Node
NodeDatasetPager - Class in org.gbif.api.util.iterables: Pages through all datasets endorsed by a given node.
NodeDatasetPager(NodeService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.NodeDatasetPager
NodeMixin - Interface in org.gbif.api.ws.mixin
NodeOrganizationPager - Class in org.gbif.api.util.iterables: Pages through all organizations endorsed by a given node.
NodeOrganizationPager(NodeService, UUID, int) - Constructor for class org.gbif.api.util.iterables.NodeOrganizationPager
NodePager - Class in org.gbif.api.util.iterables: Pages through all organizations optionally filtering by country.
NodePager(NodeService, int) - Constructor for class org.gbif.api.util.iterables.NodePager
NodeRequestSearchParams - Class in org.gbif.api.model.registry.search
NodeRequestSearchParams() - Constructor for class org.gbif.api.model.registry.search.NodeRequestSearchParams
nodes(NodeService) - Static method in class org.gbif.api.util.iterables.Iterables: Iterate over all endorsing nodes
NodeService - Interface in org.gbif.api.service.registry: Actions on a GBIF node.
NodeType - Enum in org.gbif.api.vocabulary: Enumeration for all possible node types.
NomCodeParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/nomCode.txt.
NomenclaturalCode - Enum in org.gbif.api.vocabulary: Enumeration representing the different nomenclatoral codes found in biology for scientific names.
NomenclaturalStatus - Enum in org.gbif.api.vocabulary: Vocabulary for the nomenclatural status of a name.
Nomenclature() - Constructor for class org.gbif.api.v2.NameUsageMatch2.Nomenclature
NomStatusParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/nomStatus.txt.
nonConflictingDateParts(TemporalAccessor, TemporalAccessor, TemporalAccessor) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: The idea of "non-conflicting date parts" TemporalAccessor is to get as much of year, then month, then day as possible, ignoring null and stopping once there is a contradiction.
none() - Static method in class org.gbif.api.model.collections.lookup.Match
none(Match.Status) - Static method in class org.gbif.api.model.collections.lookup.Match
normalize(String) - Method in class org.gbif.api.util.validators.identifierschemes.HuhValidator
normalize(String) - Method in interface org.gbif.api.util.validators.identifierschemes.IdentifierSchemeValidator: Transforms the value parameter into a recommended value according to a IdentifierScheme.
normalize(String) - Method in class org.gbif.api.util.validators.identifierschemes.IhIrnValidator
normalize(String) - Method in class org.gbif.api.util.validators.identifierschemes.IsniValidator
normalize(String) - Method in class org.gbif.api.util.validators.identifierschemes.Mod112
normalize(String) - Method in class org.gbif.api.util.validators.identifierschemes.OrcidValidator
normalize(String) - Method in class org.gbif.api.util.validators.identifierschemes.OtherValidator
normalize(String) - Method in class org.gbif.api.util.validators.identifierschemes.ResearcherIdValidator
normalize(String) - Method in class org.gbif.api.util.validators.identifierschemes.ViafValidator
normalize(String) - Method in class org.gbif.api.util.validators.identifierschemes.WikidataValidator
normalize(String, String, String) - Method in class org.gbif.common.parsers.date.DatePartsNormalizer: Normalize date parts value.
normalize(String, String) - Method in class org.gbif.common.parsers.date.DatePartsNormalizer: Normalize date parts value.
NORMALIZED_END_OF_LINE - Static variable in class org.gbif.utils.file.tabular.TabularFileNormalizer
normalizeFile(Path, Path, Charset, char, String, Character) - Static method in class org.gbif.utils.file.tabular.TabularFileNormalizer: Normalizes the provided tabular "file" (provided as Reader to let the caller deal with charset).
normalizeFloat(String) - Method in class org.gbif.common.parsers.date.DatePartsNormalizer: Often values are seen as Float rather than int, due to a database export The year "1978" is actually seen as "1978.0".
notifyAbsentIdentifiers(UUID, int, long, String) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Sends a notification to the data administrators about absent identifiers issues with the dataset.
NoTimezoneDateJsonSerializer() - Constructor for class org.gbif.api.jackson.DateSerde.NoTimezoneDateJsonSerializer
notOtherOrUnknown() - Method in enum org.gbif.api.vocabulary.Rank
NotPredicate - Class in org.gbif.api.model.predicate: This predicate negates its subpredicate.
NotPredicate(Predicate) - Constructor for class org.gbif.api.model.predicate.NotPredicate
NUB_DATASET_KEY - Static variable in class org.gbif.api.model.Constants: The dataset key for the GBIF backbone (NUB) taxonomy.
NUB_MAXIMUM_KEY - Static variable in class org.gbif.api.model.Constants: The maximum key for a NUB usage.
NUB_NETWORK_KEY - Static variable in class org.gbif.api.model.Constants: The network key for the GBIF backbone sources.
nubUsageID() - Method in enum org.gbif.api.vocabulary.Kingdom: Deprecated.
please use nubUsageKey() instead
nubUsageKey() - Method in enum org.gbif.api.vocabulary.Kingdom
NULL_STRINGS - Static variable in class org.gbif.common.parsers.utils.ClassificationUtils
NullToNotFound - Annotation Type in org.gbif.api.annotation: Annotation that marks a resource method to throw a NotFoundException (becomes http 404) when null is returned by the method.
NumberParser - Class in org.gbif.common.parsers: Utils class to parse numbers trying various locales so that dots and comma based formats are both supported.
numberSpecimens(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
numberSpecimens(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder

O

OBIS_NETWORK_KEY - Static variable in class org.gbif.api.model.Constants: The network key for the Ocean Biodiversity Information System (OBIS).
ObjectUtils - Class in org.gbif.utils
Occurrence - Class in org.gbif.api.model.occurrence: Represents an Occurrence as interpreted by GBIF, adding typed properties on top of the verbatim ones.
Occurrence() - Constructor for class org.gbif.api.model.occurrence.Occurrence
Occurrence(VerbatimOccurrence) - Constructor for class org.gbif.api.model.occurrence.Occurrence: Create occurrence instance from existing verbatim one, copying over all data.
OCCURRENCE_DATASET_SUBTYPES - Static variable in enum org.gbif.api.vocabulary.DatasetSubtype: A set of all DatasetSubtype that belong to DatasetType OCCURRENCE.
occurrenceCount(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
occurrenceCount(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
OccurrenceCountryIndexService - Interface in org.gbif.api.service.occurrence: Supports the listing of countries having occurrence records.
OccurrenceCube - Class in org.gbif.api.model.metrics.cube: The occurrence cube dimension definitions and the way in which they are rolled up into counts.
OccurrenceDatasetIndexService - Interface in org.gbif.api.service.occurrence: Supports the listing of datasets having occurrence records.
occurrenceDatasetsForCountry(Country) - Method in interface org.gbif.api.service.occurrence.OccurrenceDatasetIndexService: This provides a map of occurrence dataset keys to the number of records matching the given country.
occurrenceDatasetsForNubKey(int) - Method in interface org.gbif.api.service.occurrence.OccurrenceDatasetIndexService: This provides a map of occurrence dataset keys to the number of records matching the given nub key.
OccurrenceDistributionIndexService - Interface in org.gbif.api.service.occurrence: Supports listing occurrence counts by known dimensions.
OccurrenceDownloadService - Interface in org.gbif.api.service.registry: Interface to access and persist information about occurrence download events.
OccurrenceIssue - Enum in org.gbif.api.vocabulary: An enumeration of validation rules for single occurrence records.
OccurrenceMappeable - Interface in org.gbif.api.model.collections: Generic OccurrenceMapping interface for entities.
OccurrenceMapping - Class in org.gbif.api.model.collections: Models the mapping of a GRSciColl institution or collection to an occurrence record.
OccurrenceMapping() - Constructor for class org.gbif.api.model.collections.OccurrenceMapping
OccurrenceMapping(String, String, UUID) - Constructor for class org.gbif.api.model.collections.OccurrenceMapping
OccurrenceMapping(String, String, UUID, String) - Constructor for class org.gbif.api.model.collections.OccurrenceMapping
OccurrenceMappingService - Interface in org.gbif.api.service.collections: Service that provides a set of operations on OccurrenceMapping.
OccurrenceMixin - Interface in org.gbif.api.ws.mixin
OccurrenceParseResult<T> - Class in org.gbif.common.parsers.core
OccurrenceParseResult(ParseResult.STATUS, ParseResult.CONFIDENCE, T, List<T>, Throwable, Collection<OccurrenceIssue>) - Constructor for class org.gbif.common.parsers.core.OccurrenceParseResult
OccurrenceParseResult(ParseResult.STATUS, ParseResult.CONFIDENCE, T, List<T>, Throwable) - Constructor for class org.gbif.common.parsers.core.OccurrenceParseResult
OccurrenceParseResult(ParseResult<T>) - Constructor for class org.gbif.common.parsers.core.OccurrenceParseResult
OccurrencePersistenceStatus - Enum in org.gbif.api.vocabulary: These are the possible states of an Occurrence as it moves through the processing and persistence chain.
OccurrencePredicateSearchRequest - Class in org.gbif.api.model.occurrence.search: Search request that uses a predicate filter like the ones used un downloads.
OccurrencePredicateSearchRequest() - Constructor for class org.gbif.api.model.occurrence.search.OccurrencePredicateSearchRequest
OccurrenceRelation - Class in org.gbif.api.model.occurrence: Occurrence relations based on the dwc:ResourceRelationship model.
OccurrenceRelation() - Constructor for class org.gbif.api.model.occurrence.OccurrenceRelation
OccurrenceSchemaType - Enum in org.gbif.api.vocabulary: The slightly simplified standard schemas that a crawled occurrence record could be built in.
OccurrenceSearchParameter - Enum in org.gbif.api.model.occurrence.search: Supported query parameters by the occurrence search and download service.
OccurrenceSearchRequest - Class in org.gbif.api.model.occurrence.search: Request class for issuing search request to the occurrence search service.
OccurrenceSearchRequest() - Constructor for class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
OccurrenceSearchRequest(long, int) - Constructor for class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
OccurrenceSearchRequest(Pageable) - Constructor for class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
OccurrenceSearchService - Interface in org.gbif.api.service.occurrence: Interface that provides search operations over Occurrences.
OccurrenceService - Interface in org.gbif.api.service.occurrence
OccurrenceStatus - Enum in org.gbif.api.vocabulary: A statement about the presence or absence of an occurrence at a location at a time.
OccurrenceStatusParser - Class in org.gbif.common.parsers
OccurrenceValidationReport - Class in org.gbif.api.model.crawler: The rules followed here should match the document at: http://dev.gbif.org/wiki/display/INT/Identifier+problems+and+how+to+solve+them.
OccurrenceValidationReport(int, int, int, int, int, boolean) - Constructor for class org.gbif.api.model.crawler.OccurrenceValidationReport
OFFICIAL_COUNTRIES - Static variable in enum org.gbif.api.vocabulary.Country
operationType(Request.OperationType) - Method in class org.gbif.api.model.common.messaging.Request.Builder
OrcidValidator - Class in org.gbif.api.util.validators.identifierschemes: Validator for Orcid identifiers.
OrcidValidator() - Constructor for class org.gbif.api.util.validators.identifierschemes.OrcidValidator
org.gbif.api.annotation - package org.gbif.api.annotation
org.gbif.api.documentation - package org.gbif.api.documentation
org.gbif.api.exception - package org.gbif.api.exception
org.gbif.api.jackson - package org.gbif.api.jackson
org.gbif.api.model - package org.gbif.api.model
org.gbif.api.model.checklistbank - package org.gbif.api.model.checklistbank
org.gbif.api.model.checklistbank.search - package org.gbif.api.model.checklistbank.search
org.gbif.api.model.collections - package org.gbif.api.model.collections
org.gbif.api.model.collections.duplicates - package org.gbif.api.model.collections.duplicates
org.gbif.api.model.collections.lookup - package org.gbif.api.model.collections.lookup
org.gbif.api.model.collections.merge - package org.gbif.api.model.collections.merge
org.gbif.api.model.collections.request - package org.gbif.api.model.collections.request
org.gbif.api.model.collections.search - package org.gbif.api.model.collections.search
org.gbif.api.model.collections.suggestions - package org.gbif.api.model.collections.suggestions
org.gbif.api.model.collections.view - package org.gbif.api.model.collections.view
org.gbif.api.model.common - package org.gbif.api.model.common
org.gbif.api.model.common.export - package org.gbif.api.model.common.export
org.gbif.api.model.common.messaging - package org.gbif.api.model.common.messaging
org.gbif.api.model.common.paging - package org.gbif.api.model.common.paging
org.gbif.api.model.common.search - package org.gbif.api.model.common.search
org.gbif.api.model.crawler - package org.gbif.api.model.crawler
org.gbif.api.model.event - package org.gbif.api.model.event
org.gbif.api.model.literature - package org.gbif.api.model.literature
org.gbif.api.model.literature.search - package org.gbif.api.model.literature.search
org.gbif.api.model.metrics - package org.gbif.api.model.metrics
org.gbif.api.model.metrics.cube - package org.gbif.api.model.metrics.cube: Provides the classes necessary to construct read only requests to well defined cubes.
org.gbif.api.model.occurrence - package org.gbif.api.model.occurrence
org.gbif.api.model.occurrence.geo - package org.gbif.api.model.occurrence.geo
org.gbif.api.model.occurrence.search - package org.gbif.api.model.occurrence.search
org.gbif.api.model.pipelines - package org.gbif.api.model.pipelines
org.gbif.api.model.pipelines.ws - package org.gbif.api.model.pipelines.ws
org.gbif.api.model.predicate - package org.gbif.api.model.predicate
org.gbif.api.model.registry - package org.gbif.api.model.registry
org.gbif.api.model.registry.eml - package org.gbif.api.model.registry.eml
org.gbif.api.model.registry.eml.curatorial - package org.gbif.api.model.registry.eml.curatorial
org.gbif.api.model.registry.eml.geospatial - package org.gbif.api.model.registry.eml.geospatial
org.gbif.api.model.registry.eml.temporal - package org.gbif.api.model.registry.eml.temporal
org.gbif.api.model.registry.metasync - package org.gbif.api.model.registry.metasync
org.gbif.api.model.registry.search - package org.gbif.api.model.registry.search
org.gbif.api.model.registry.search.collections - package org.gbif.api.model.registry.search.collections
org.gbif.api.model.registry.view - package org.gbif.api.model.registry.view
org.gbif.api.query - package org.gbif.api.query
org.gbif.api.service.checklistbank - package org.gbif.api.service.checklistbank
org.gbif.api.service.collections - package org.gbif.api.service.collections
org.gbif.api.service.common - package org.gbif.api.service.common
org.gbif.api.service.crawler - package org.gbif.api.service.crawler
org.gbif.api.service.metrics - package org.gbif.api.service.metrics
org.gbif.api.service.occurrence - package org.gbif.api.service.occurrence
org.gbif.api.service.pipelines - package org.gbif.api.service.pipelines
org.gbif.api.service.registry - package org.gbif.api.service.registry
org.gbif.api.util - package org.gbif.api.util
org.gbif.api.util.comparators - package org.gbif.api.util.comparators
org.gbif.api.util.formatter - package org.gbif.api.util.formatter
org.gbif.api.util.iterables - package org.gbif.api.util.iterables
org.gbif.api.util.validators.email - package org.gbif.api.util.validators.email
org.gbif.api.util.validators.identifierschemes - package org.gbif.api.util.validators.identifierschemes
org.gbif.api.v2 - package org.gbif.api.v2
org.gbif.api.vocabulary - package org.gbif.api.vocabulary
org.gbif.api.vocabulary.collections - package org.gbif.api.vocabulary.collections
org.gbif.api.ws.mixin - package org.gbif.api.ws.mixin
org.gbif.common.parsers - package org.gbif.common.parsers
org.gbif.common.parsers.core - package org.gbif.common.parsers.core
org.gbif.common.parsers.date - package org.gbif.common.parsers.date
org.gbif.common.parsers.geospatial - package org.gbif.common.parsers.geospatial
org.gbif.common.parsers.utils - package org.gbif.common.parsers.utils
org.gbif.nameparser - package org.gbif.nameparser
org.gbif.utils - package org.gbif.utils
org.gbif.utils.collection - package org.gbif.utils.collection
org.gbif.utils.concurrent - package org.gbif.utils.concurrent
org.gbif.utils.file - package org.gbif.utils.file
org.gbif.utils.file.csv - package org.gbif.utils.file.csv
org.gbif.utils.file.properties - package org.gbif.utils.file.properties
org.gbif.utils.file.tabular - package org.gbif.utils.file.tabular
org.gbif.utils.number - package org.gbif.utils.number
org.gbif.utils.rs - package org.gbif.utils.rs
org.gbif.utils.text - package org.gbif.utils.text
Organization - Class in org.gbif.api.model.registry: A GBIF data publisher.
Organization() - Constructor for class org.gbif.api.model.registry.Organization
ORGANIZATION_KEY_PARAM - Static variable in class org.gbif.api.model.registry.search.InstallationRequestSearchParams
OrganizationContactView - Class in org.gbif.api.model.registry.view
OrganizationContactView() - Constructor for class org.gbif.api.model.registry.view.OrganizationContactView
OrganizationMixin - Interface in org.gbif.api.ws.mixin
OrganizationOccurrenceDownloadUsage - Class in org.gbif.api.model.registry: Represents the information about the usage of one organization in an occurrence download.
OrganizationOccurrenceDownloadUsage() - Constructor for class org.gbif.api.model.registry.OrganizationOccurrenceDownloadUsage
OrganizationPager - Class in org.gbif.api.util.iterables: Pages through all organizations optionally filtering by country.
OrganizationPager(OrganizationService, Country, int) - Constructor for class org.gbif.api.util.iterables.OrganizationPager
OrganizationRequestSearchParams - Class in org.gbif.api.model.registry.search
OrganizationRequestSearchParams() - Constructor for class org.gbif.api.model.registry.search.OrganizationRequestSearchParams
organizations(Country, OrganizationService) - Static method in class org.gbif.api.util.iterables.Iterables
OrganizationService - Interface in org.gbif.api.service.registry
OrganizationUsageSortField - Enum in org.gbif.api.vocabulary: Fields to sort by the organization usages in an occurrence download.
OrgHostingPager - Class in org.gbif.api.util.iterables: Iterates over all datasets hosted by a given organisation.
OrgHostingPager(OrganizationService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.OrgHostingPager
OrgPublishingPager - Class in org.gbif.api.util.iterables: Iterates over all datasets published by a given organisation.
OrgPublishingPager(OrganizationService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.OrgPublishingPager
Origin - Enum in org.gbif.api.vocabulary: Enumeration to classify name usages by how they originated.
OtherValidator - Class in org.gbif.api.util.validators.identifierschemes
OtherValidator() - Constructor for class org.gbif.api.util.validators.identifierschemes.OtherValidator

P

page(Pageable) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
page(Pageable) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
Pageable - Interface in org.gbif.api.model.common.paging: Most simple paging interface for both request and responses.
Pageable.OffsetLimitParameters - Annotation Type in org.gbif.api.model.common.paging: The usual (search) limit and offset parameters
PageableBase - Class in org.gbif.api.model.common.paging: Generically is a class that contains attributes used by operations that are aware of pagination.
pagesCrawled(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
pagesFragmentedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
pagesFragmentedSuccessful(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
PagingConstants - Class in org.gbif.api.model.common.paging: Paging constants.
PagingRequest - Class in org.gbif.api.model.common.paging
PagingRequest() - Constructor for class org.gbif.api.model.common.paging.PagingRequest
PagingRequest(Pageable) - Constructor for class org.gbif.api.model.common.paging.PagingRequest
PagingRequest(long, int) - Constructor for class org.gbif.api.model.common.paging.PagingRequest
PagingResponse<T> - Class in org.gbif.api.model.common.paging: Paging response bean.
PagingResponse() - Constructor for class org.gbif.api.model.common.paging.PagingResponse: Default constructor with default paging values.
PagingResponse(Pageable) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
PagingResponse(Pageable, Long) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
PagingResponse(long, int) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
PagingResponse(Pageable, Long, List<T>) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
PagingResponse(long, int, Long) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
PagingResponse(long, int, Long, List<T>) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
PARAM_LIMIT - Static variable in class org.gbif.api.model.common.paging.PagingConstants: Limit param name.
PARAM_OFFSET - Static variable in class org.gbif.api.model.common.paging.PagingConstants: Offset param name.
ParamName - Annotation Type in org.gbif.api.annotation: Overrides parameter name when a form param name does not match a method param name.
ParentLineage() - Constructor for class org.gbif.api.model.event.Event.ParentLineage
Parsable<T> - Interface in org.gbif.common.parsers.core: Generic interface to allow multiple parser implementations.
parse(String, Rank) - Method in interface org.gbif.api.service.checklistbank.NameParser: Fully parse the supplied name also trying to extract authorships, a conceptual sec reference, remarks or notes on the nomenclatural status.
parse(String) - Method in interface org.gbif.api.service.checklistbank.NameParser: Delegate method to parse a scientific name of unknown rank.
parse(String) - Method in class org.gbif.common.parsers.BasisOfRecordParser
parse(String) - Method in class org.gbif.common.parsers.core.ASCIIParser
parse(String) - Method in class org.gbif.common.parsers.core.DictionaryBackedParser: Tries to parse the input data according to its backing dictionary.
parse(String) - Method in interface org.gbif.common.parsers.core.Parsable: Tries to parse the input and returns a ParseResult object.
parse(String) - Method in class org.gbif.common.parsers.date.CustomizedTextDateParser
parse(String, DateComponentOrdering) - Method in class org.gbif.common.parsers.date.CustomizedTextDateParser
parse(String, DateComponentOrdering[]) - Method in class org.gbif.common.parsers.date.CustomizedTextDateParser
parse(String, String, String) - Method in class org.gbif.common.parsers.date.CustomizedTextDateParser
parse(Integer, Integer, Integer) - Method in class org.gbif.common.parsers.date.CustomizedTextDateParser
parse(String, String) - Method in class org.gbif.common.parsers.date.CustomizedTextDateParser
parse(Integer, Integer) - Method in class org.gbif.common.parsers.date.CustomizedTextDateParser
parse(String) - Method in class org.gbif.common.parsers.date.DateTimeMultiParser: Try to parse the input using all the parsers specified in the constructor.
parse(String) - Method in class org.gbif.common.parsers.date.DateTimeParser: Parses the provided String as a TemporalAccessor if possible, otherwise returns null.
parse(String) - Method in interface org.gbif.common.parsers.date.TemporalParser: Parse a date represented as a single String into a TemporalAccessor.
parse(String, DateComponentOrdering) - Method in interface org.gbif.common.parsers.date.TemporalParser: Parse a String date restricted to the ordering provided.
parse(String, DateComponentOrdering[]) - Method in interface org.gbif.common.parsers.date.TemporalParser: Parse a String date to a TemporalAccessor, attempting unambiguous formats and the orderings provided.
parse(String, String, String) - Method in interface org.gbif.common.parsers.date.TemporalParser: Parse year, month, day strings as a TemporalAccessor.
parse(Integer, Integer, Integer) - Method in interface org.gbif.common.parsers.date.TemporalParser: Parse year, month, day integers as a TemporalAccessor.
parse(String, String) - Method in interface org.gbif.common.parsers.date.TemporalParser: Parse year, dayOfYear strings as a TemporalAccessor.
parse(Integer, Integer) - Method in interface org.gbif.common.parsers.date.TemporalParser: Parse year, dayOfYear integers as a TemporalAccessor.
parse(String) - Method in class org.gbif.common.parsers.date.TemporalRangeParser
parse(String, String, String, String) - Method in class org.gbif.common.parsers.date.TemporalRangeParser
parse(String, String, String, String, String, String) - Method in class org.gbif.common.parsers.date.TemporalRangeParser
parse(String) - Method in class org.gbif.common.parsers.geospatial.DatumParser
parse(String) - Method in class org.gbif.common.parsers.NomStatusParser
parse(String) - Method in class org.gbif.common.parsers.TypifiedNameParser
parse(String) - Static method in class org.gbif.common.parsers.UrlParser: Convert a String into a java.net.URI.
parse(String, Rank) - Method in class org.gbif.nameparser.NameParserGbifV1
parse(String) - Method in class org.gbif.nameparser.NameParserGbifV1
parseBoolean(String) - Static method in class org.gbif.utils.text.StringUtils: Simple boolean parsing method that understands yes,y,true,t or 1 as true and respective values for false.
parseContactType(String) - Static method in class org.gbif.api.util.VocabularyUtils
parseDate(String) - Method in enum org.gbif.api.util.IsoDateParsingUtils.IsoDateFormat: Try to parse a string with the current date format.
parseDate(String) - Static method in class org.gbif.api.util.IsoDateParsingUtils: Parses a single date value.
parseDateRange(String) - Static method in class org.gbif.api.util.IsoDateParsingUtils: Parses a closed-open range of dates, using the most specific format for each side of the range.
parseDateRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator: Parses a range of ISO dates.
parseDecimalRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator: Parses a decimal range in the format 123.1,456.
parseDepth(String, String, String) - Static method in class org.gbif.common.parsers.geospatial.MeterRangeParser
parseDistance(String) - Static method in enum org.gbif.api.model.occurrence.geo.DistanceUnit: Parse a DistanceUnit.Distance from a given String
parseDistance(String) - Static method in class org.gbif.api.util.SearchTypeValidator
parseDistanceRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator: Parses a distance range in the format 123m,456km.
ParsedName - Class in org.gbif.api.model.checklistbank: A container of a taxon name that is atomised into its relevant, separate parts.
ParsedName() - Constructor for class org.gbif.api.model.checklistbank.ParsedName
ParsedName(NameType, String, String, String, String, NamePart, Rank, String, String, String, String, String, String, String, String, String) - Constructor for class org.gbif.api.model.checklistbank.ParsedName
ParsedNameService - Interface in org.gbif.api.service.checklistbank: ChecklistBank service dealing with parsed names.
parseDouble(String) - Static method in class org.gbif.common.parsers.NumberParser
parseElevation(String, String, String) - Static method in class org.gbif.common.parsers.geospatial.MeterRangeParser
parseEmail(String) - Static method in class org.gbif.utils.text.EmailUtils
parseEndpointType(String) - Static method in class org.gbif.api.util.VocabularyUtils
parseGeoDistance(String) - Static method in class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
parseGeoDistance(String, String, String) - Static method in class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
parseIdentifierType(String) - Static method in class org.gbif.api.util.VocabularyUtils
parseInteger(String) - Static method in class org.gbif.common.parsers.NumberParser
parseInteger(String) - Static method in class org.gbif.utils.text.StringUtils: Simple integer parsing method that does not throw any exception but returns null instead.
parseIntegerRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator: Parses an integer range in the format 123,456
parseLatLng(String, String) - Static method in class org.gbif.common.parsers.geospatial.CoordinateParseUtils: This parses string representations of latitude and longitude values.
parseLocalDate(String, Range<LocalDate>, OccurrenceIssue) - Method in class org.gbif.common.parsers.date.MultiinputTemporalParser
parseLocalDate(String, Range<LocalDate>, OccurrenceIssue, OccurrenceIssue) - Method in class org.gbif.common.parsers.date.MultiinputTemporalParser
parseMeterRange(String, String, String) - Static method in class org.gbif.common.parsers.geospatial.MeterRangeParser: Takes min and max values in metres and a known precision and calculates a single mean value and its accuracy.
parseMeters(String) - Static method in class org.gbif.common.parsers.geospatial.MeterRangeParser: Parses a string supposed to be a value in metres.
parseMimeType(String) - Method in class org.gbif.common.parsers.MediaParser: Parses a MIME type using Apache Tika which can handle the following: https://github.com/apache/tika/blob/master/tika-core/src/main/resources/org/apache/tika/mime/tika-mimetypes.xml https://tika.apache.org/1.19.1/formats.html#Full_list_of_Supported_Formats
parseMimeType(URI) - Method in class org.gbif.common.parsers.MediaParser: Parses a MIME type using Apache Tika which can handle the following: https://github.com/apache/tika/blob/master/tika-core/src/main/resources/org/apache/tika/mime/tika-mimetypes.xml https://tika.apache.org/1.19.1/formats.html#Full_list_of_Supported_Formats
parseName(String) - Static method in class org.gbif.common.parsers.utils.ClassificationUtils: Deprecated.
unsufficiently documented; should be in NameParser project if it is needed at all
parseName(String, Rank) - Static method in class org.gbif.common.parsers.utils.ClassificationUtils: Deprecated.
unsufficiently documented; should be in NameParser project if it is needed at all
parseQuietly(String, Rank) - Method in interface org.gbif.api.service.checklistbank.NameParser: Fully parses a name using #parse(String, Rank) but converts names that throw a UnparsableException into ParsedName objects with the scientific name, rank and name type given.
parseQuietly(String) - Method in interface org.gbif.api.service.checklistbank.NameParser: Delegate method to parse a scientific name of unknown rank quietly.
parseQuietly(String, Rank) - Method in class org.gbif.nameparser.NameParserGbifV1
parseQuietly(String) - Method in class org.gbif.nameparser.NameParserGbifV1
PARSER - Static variable in class org.gbif.common.parsers.utils.NameParserUtils
parseRecordedDate(String, String, String, String) - Method in class org.gbif.common.parsers.date.MultiinputTemporalParser
parseRecordedDate(String, String, String, String, String) - Method in class org.gbif.common.parsers.date.MultiinputTemporalParser: Three dates are provided: year, month and day dateString year and dayOfYear
parseRecordedDate(String) - Method in class org.gbif.common.parsers.date.MultiinputTemporalParser
ParseResult<T> - Class in org.gbif.common.parsers.core: This represents the response of a generic parse operation.
ParseResult(ParseResult.STATUS, ParseResult.CONFIDENCE, T, List<T>, Throwable) - Constructor for class org.gbif.common.parsers.core.ParseResult: Forces all fields to be provided
ParseResult.CONFIDENCE - Enum in org.gbif.common.parsers.core
ParseResult.STATUS - Enum in org.gbif.common.parsers.core
parseTechnicalInstallationType(String) - Static method in class org.gbif.api.util.VocabularyUtils: Deprecated.
parseTemporal(String) - Static method in class org.gbif.api.util.IsoDateParsingUtils: Parses an ISO 8601-format date or date-time.
parseToCanonical(String, Rank) - Method in interface org.gbif.api.service.checklistbank.NameParser: Parses the scientific name without authorship and returns the ParsedName.canonicalName() string
parseToCanonical(String) - Method in interface org.gbif.api.service.checklistbank.NameParser: Delegate method to parse a scientific name of unknown rank and return its canonical form.
parseToCanonical(String, Rank) - Method in class org.gbif.nameparser.NameParserGbifV1
parseToCanonical(String) - Method in class org.gbif.nameparser.NameParserGbifV1
parseToCanonicalOrScientificName(String) - Method in class org.gbif.nameparser.NameParserGbifV1
parseToCanonicalOrScientificName(String, Rank) - Method in class org.gbif.nameparser.NameParserGbifV1: Tries to parses the name without authorship and returns the ParsedName.canonicalName() string For unparsable types and other UnparsableExceptions the original scientific name is returned.
parseUriList(String) - Static method in class org.gbif.common.parsers.UrlParser: Parses a single string with null, one or many URIs concatenated together as found in dwc:associatedMedia.
parseUriThenTitle(URI, String) - Method in class org.gbif.common.parsers.LicenseParser: Parse license supplied in two parts: URI and title.
parseVerbatimCoordinates(String) - Static method in class org.gbif.common.parsers.geospatial.CoordinateParseUtils
PartialDate - Annotation Type in org.gbif.api.annotation: This annotation is used to mark Date parameter that can accept partial dates as input.
ParticipationStatus - Enum in org.gbif.api.vocabulary: Enumeration for all of GBIF's participation statuses.
pendingEndorsements(Pageable) - Method in interface org.gbif.api.service.registry.NodeService: Provides access to the organizations that are awaiting an endorsement approval.
pendingEndorsements(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NodeService: Provides access to the organizations that are awaiting an endorsement approval for the given node.
personalCollection(boolean) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
PIPELINE_EXECUTION_BY_CREATED_ASC - Static variable in class org.gbif.api.model.pipelines.PipelineProcess
PIPELINE_PROCESS_BY_LATEST_EXEUCTION_ASC - Static variable in class org.gbif.api.model.pipelines.PipelineProcess: Comparator that sorts the pipeline processes by the created date of the latest execution.
PIPELINE_PROCESS_BY_LATEST_STEP_RUNNING_ASC - Static variable in class org.gbif.api.model.pipelines.PipelineProcess: Comparator that sorts pipeline processes by the start date of their latest step in ascending order.
PipelineExecution - Class in org.gbif.api.model.pipelines: Models an execution of a pipeline that can include one or more steps.
PipelineExecution() - Constructor for class org.gbif.api.model.pipelines.PipelineExecution
PipelineProcess - Class in org.gbif.api.model.pipelines: Models a pipeline process for a specific dataset and attempt.
PipelineProcess() - Constructor for class org.gbif.api.model.pipelines.PipelineProcess
PipelineProcessParameters - Class in org.gbif.api.model.pipelines.ws: Class to send the parameters of a PipelineProcess.
PipelineProcessParameters() - Constructor for class org.gbif.api.model.pipelines.ws.PipelineProcessParameters
PipelineProcessParameters(UUID, int) - Constructor for class org.gbif.api.model.pipelines.ws.PipelineProcessParameters
PipelinesHistoryService - Interface in org.gbif.api.service.pipelines
PipelineStep - Class in org.gbif.api.model.pipelines: Models a step in pipelines.
PipelineStep() - Constructor for class org.gbif.api.model.pipelines.PipelineStep
PipelineStep.MetricInfo - Class in org.gbif.api.model.pipelines: Inner class to store metrics.
PipelineStep.Status - Enum in org.gbif.api.model.pipelines: Enum to represent the status of a step.
PipelinesWorkflow - Class in org.gbif.api.model.pipelines
PipelinesWorkflow.Graph<T> - Class in org.gbif.api.model.pipelines
PipelinesWorkflow.Graph.Edge - Class in org.gbif.api.model.pipelines
PLAZI_ORG_KEY - Static variable in class org.gbif.api.model.Constants: The publishing organization key for Plazi.
Point - Class in org.gbif.api.model.registry.eml.geospatial
Point() - Constructor for class org.gbif.api.model.registry.eml.geospatial.Point
Polygon - Class in org.gbif.api.model.registry.eml.geospatial: A simple polygon made out of a list of points to be joined.
Polygon() - Constructor for class org.gbif.api.model.registry.eml.geospatial.Polygon
PostPersist - Interface in org.gbif.api.model.registry: A marker intended for validation annotations indicating that the rule should be applied for entites before they have been persisted.
PreconditionUtils - Class in org.gbif.api.util: Analogues of methods from guava's Preconditions
PreconditionUtils - Class in org.gbif.utils
Predicate - Interface in org.gbif.api.model.predicate
PredicateDownloadRequest - Class in org.gbif.api.model.occurrence: An occurrence download request whose filters are based on predicates ( see Predicate).
PredicateDownloadRequest() - Constructor for class org.gbif.api.model.occurrence.PredicateDownloadRequest
PredicateDownloadRequest(Predicate, String, Collection<String>, Boolean, DownloadFormat, DownloadType, Set<Extension>) - Constructor for class org.gbif.api.model.occurrence.PredicateDownloadRequest: Full constructor.
preferredDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder
preferredDateTimeParser(String, DateComponentOrdering, TemporalQuery<?>, Year) - Method in class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder
PrePersist - Interface in org.gbif.api.model.registry: A marker intended for validation annotations indicating that the rule should be applied for entites before they have been persisted.
PreservationMethodType - Enum in org.gbif.api.vocabulary: The definition of the available preservation method types (the method used to preserve specimens).
PreservationType - Enum in org.gbif.api.vocabulary.collections: Mechanism of preservation applied to a collection.
preservationTypes(List<PreservationType>) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
PRIORITIES - Static variable in class org.gbif.api.util.comparators.EndpointPriorityComparator
ProcessingErrorType - Enum in org.gbif.api.vocabulary: Deprecated.
ProcessState - Enum in org.gbif.api.model.crawler: This enum lists the state of an occurrence or checklist crawl.
processStateChecklist(ProcessState) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
processStateOccurrence(ProcessState) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
processStateSample(ProcessState) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
Project - Class in org.gbif.api.model.registry.eml: A dataset can be part of a project.
Project() - Constructor for class org.gbif.api.model.registry.eml.Project
Project(String, String, List<Contact>, String, String, String, String) - Constructor for class org.gbif.api.model.registry.eml.Project
PropertiesUtil - Class in org.gbif.utils.file.properties: Utility class for handling properties files.
propertyAsBool(Properties, String, boolean) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Reads and casts the named property as a boolean.
propertyAsDouble(Properties, String, boolean, Double) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Reads and casts the named property as an Double.
propertyAsFloat(Properties, String, boolean, Float) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Reads and casts the named property as an Float.
propertyAsInt(Properties, String, boolean, Integer) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Reads and casts the named property as an Integer.
propertyAsUTF8Bytes(Properties, String, boolean, byte[]) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Reads and converts the named property as UTF8 bytes.
PROTOCOL - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
publishedDatasets(UUID, Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService: Provides paging service to list datasets published by a specific organization.
publishedDatasets(UUID, DatasetType, OrganizationService) - Static method in class org.gbif.api.util.iterables.Iterables
PUBLISHING_COUNTRY - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
publishingCountriesForCountry(Country) - Method in interface org.gbif.api.service.occurrence.OccurrenceCountryIndexService: Lists all publishing countries of occurrences falling within a given country.
publishingOrganizations(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NetworkService: Pages through publishing organizations of a network.

Q

Q_PARAM - Static variable in class org.gbif.api.model.registry.search.RequestSearchParams
query(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
query(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
QUERY_PARAM - Static variable in class org.gbif.api.model.common.search.SearchConstants: The http parameter name for the search query.
QUERY_WILDCARD - Static variable in class org.gbif.api.model.common.search.SearchConstants: Wildcard character to be used in 'search all' operations and range queries; e.g.: [* TO 100].
QueryBuildingException - Exception in org.gbif.api.exception
QueryBuildingException() - Constructor for exception org.gbif.api.exception.QueryBuildingException
QueryBuildingException(String) - Constructor for exception org.gbif.api.exception.QueryBuildingException
QueryBuildingException(String, Throwable) - Constructor for exception org.gbif.api.exception.QueryBuildingException
QueryBuildingException(Throwable) - Constructor for exception org.gbif.api.exception.QueryBuildingException
QueryBuildingException(String, Throwable, boolean, boolean) - Constructor for exception org.gbif.api.exception.QueryBuildingException
QueryVisitor - Interface in org.gbif.api.query
quoteChar - Variable in class org.gbif.utils.file.csv.CSVReader

R

randomAuthor() - Static method in class org.gbif.utils.text.StringUtils
randomEpithet() - Static method in class org.gbif.utils.text.StringUtils
randomFamily() - Static method in class org.gbif.utils.text.StringUtils
randomGenus() - Static method in class org.gbif.utils.text.StringUtils
randomSpecies() - Static method in class org.gbif.utils.text.StringUtils: Creates a random species binomial with no meaning at all, but highly randomized.
randomSpeciesYear() - Static method in class org.gbif.utils.text.StringUtils
randomString(int) - Static method in class org.gbif.utils.text.StringUtils: Creates a random string in upper case of given length with purely latin characters only.
Range<T extends Comparable<? super T>> - Class in org.gbif.api.util: Simplified version of guava's Range.
RangePredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate: This predicate checks if its key is within the range value.
RangePredicate(S, RangeValue) - Constructor for class org.gbif.api.model.predicate.RangePredicate
RangeValue - Class in org.gbif.api.util: A range used for predicates allowing including or excluding the end values.
RangeValue(String, String, String, String) - Constructor for class org.gbif.api.util.RangeValue
Rank - Enum in org.gbif.api.vocabulary: An ordered taxonomic rank enumeration with the most frequently used values.
RankedName - Class in org.gbif.api.v2
RankedName() - Constructor for class org.gbif.api.v2.RankedName
RankedName(int, String, Rank) - Constructor for class org.gbif.api.v2.RankedName
RankJsonDeserializer() - Constructor for class org.gbif.api.jackson.RankSerde.RankJsonDeserializer
RankJsonSerializer() - Constructor for class org.gbif.api.jackson.RankSerde.RankJsonSerializer
RankParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/rank.txt.
RankSerde - Class in org.gbif.api.jackson: Jackson JsonSerializer and Jackson JsonDeserializer classes for Rank that uses the common rank markers instead of enum names.
RankSerde() - Constructor for class org.gbif.api.jackson.RankSerde
RankSerde.RankJsonDeserializer - Class in org.gbif.api.jackson: Jackson JsonDeserializer for Rank.
RankSerde.RankJsonSerializer - Class in org.gbif.api.jackson: Jackson JsonSerializer for Rank.
rawOccurrencesPersistedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
rawOccurrencesPersistedNew(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
rawOccurrencesPersistedUnchanged(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
rawOccurrencesPersistedUpdated(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
read() - Method in class org.gbif.utils.file.BomSafeInputStreamWrapper: Deprecated.
read() - Method in interface org.gbif.utils.file.tabular.TabularDataFileReader: Read a non-empty line of the tabular data file.
READ_AHEAD_BYTES - Static variable in class org.gbif.utils.file.FileSplitter
ReadBuilder - Class in org.gbif.api.model.metrics.cube: Provides building of addresses for reading the cube.
ReadBuilder() - Constructor for class org.gbif.api.model.metrics.cube.ReadBuilder
readByteBuffer(File) - Static method in class org.gbif.utils.file.FileUtils: Reads a complete file into a byte buffer.
readByteBuffer(File, int) - Static method in class org.gbif.utils.file.FileUtils: Reads the first bytes of a file into a byte buffer.
readEntireStream(InputStream) - Method in class org.gbif.utils.file.InputStreamUtils: Converts an entire InputStream to a single String with UTF8 as the character encoding.
readEntireStream(InputStream, String) - Method in class org.gbif.utils.file.InputStreamUtils: Converts an entire InputStream to a single String with explicitly provided character encoding.
readFromFile(String) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Reads a property file from an absolute filepath.
REASON_REQUIRED_MESSAGE - Static variable in interface org.gbif.api.service.pipelines.PipelinesHistoryService
RecordError - Class in org.gbif.api.model.metrics: Deprecated.
RecordError() - Constructor for class org.gbif.api.model.metrics.RecordError: Deprecated.
RecordError(RecordError.Builder) - Constructor for class org.gbif.api.model.metrics.RecordError: Deprecated.
RecordError.Builder - Class in org.gbif.api.model.metrics: Deprecated.
recordId(long) - Method in class org.gbif.api.model.metrics.RecordError.Builder: Deprecated.
Reference - Class in org.gbif.api.model.checklistbank: Reference Model Object represents a literature reference stating a bibliography for a taxon.
Reference() - Constructor for class org.gbif.api.model.checklistbank.Reference
ReferenceService - Interface in org.gbif.api.service.checklistbank: Service interface for Reference Interface methods.
RelationType - Enum in org.gbif.api.vocabulary
remove(Object) - Method in class org.gbif.utils.collection.CompactHashSet: Removes the specified element from the set.
remove() - Method in class org.gbif.utils.file.csv.CSVReader
removeConstituent(UUID, UUID) - Method in interface org.gbif.api.service.registry.NetworkService: Removes an existing constituent dataset from a network.
removeContactPerson(UUID, int) - Method in interface org.gbif.api.service.collections.ContactService: Removes a Contact contact from an entity.
removeProperties(Properties, String) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Remove properties from the original object and return the removed element(s) as new Properties object.
replace(UUID, UUID) - Method in interface org.gbif.api.service.collections.CollectionEntityService: Replaces a entity with another.
replaceContactPersons(UUID, List<Contact>) - Method in interface org.gbif.api.service.collections.ContactService: Removes all the contacts from an entity.
replacedBy(UUID) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
replacedBy(UUID) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
Request<T> - Class in org.gbif.api.model.common.messaging: Class that represents a generic invocation of operation.
Request() - Constructor for class org.gbif.api.model.common.messaging.Request
Request.Builder<T> - Class in org.gbif.api.model.common.messaging: Builder class for Request instances.
Request.OperationType - Enum in org.gbif.api.model.common.messaging: CRUD operation types.
RequestSearchParams - Class in org.gbif.api.model.registry.search: Base class for registry requests to list the entities.
RequestSearchParams() - Constructor for class org.gbif.api.model.registry.search.RequestSearchParams
ResearcherIdValidator - Class in org.gbif.api.util.validators.identifierschemes
ResearcherIdValidator() - Constructor for class org.gbif.api.util.validators.identifierschemes.ResearcherIdValidator
resolution(TemporalAccessor) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Returns the resolution of the TemporalAccessor: year=1, month=2, day=3.
resolutionToSeconds(TemporalAccessor) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Returns the resolution of the TemporalAccessor: year=1, month=2, day=3, hour=4, minutes=5, seconds=6.
resolveAmbiguousDates(TemporalAccessor, List<TemporalAccessor>) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Returns a date from the list of dodgyTas which matches the reliableTa
ResourcesUtil - Class in org.gbif.utils.file: Utils class dealing with classpath resources.
Response<T> - Class in org.gbif.api.model.common.messaging
Response() - Constructor for class org.gbif.api.model.common.messaging.Response
Response(Response<T>) - Constructor for class org.gbif.api.model.common.messaging.Response
Response(Response.Status) - Constructor for class org.gbif.api.model.common.messaging.Response: Constructor using status only.
Response(Response.Status, String) - Constructor for class org.gbif.api.model.common.messaging.Response
Response(Response.Status, T, String) - Constructor for class org.gbif.api.model.common.messaging.Response
Response.Builder<T> - Class in org.gbif.api.model.common.messaging: Builder for Response objects.
Response.Status - Enum in org.gbif.api.model.common.messaging
Response.StatusCode - Enum in org.gbif.api.model.common.messaging
ResponseChain<T,R> - Class in org.gbif.api.model.common.messaging: Response that can contain a list of related responses.
ResponseChain() - Constructor for class org.gbif.api.model.common.messaging.ResponseChain
ResponseChain(Response.Status) - Constructor for class org.gbif.api.model.common.messaging.ResponseChain
ResponseChain(Response.Status, String) - Constructor for class org.gbif.api.model.common.messaging.ResponseChain
ResponseChain(Response.Status, T, String) - Constructor for class org.gbif.api.model.common.messaging.ResponseChain
revokeEndorsement(UUID) - Method in interface org.gbif.api.service.registry.OrganizationService: Revoke the endorsement of the Organization.
Rollup - Class in org.gbif.api.model.metrics.cube: A rollup defines an addressable count that is maintained for a set of dimensions.
Rollup() - Constructor for class org.gbif.api.model.metrics.cube.Rollup: Prefer use of the constructor taking the parameters over this method.
Rollup(Dimension<?>...) - Constructor for class org.gbif.api.model.metrics.cube.Rollup
Rollup(Set<Dimension<?>>) - Constructor for class org.gbif.api.model.metrics.cube.Rollup
ROLLUPS - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
rootException(Throwable) - Method in class org.gbif.api.model.common.messaging.Response.Builder
RsGbifOrg - Class in org.gbif.utils.rs: Utility class knowing the url layout of rs.gbif.org to access authority and dictionary files.
RsGbifOrg() - Constructor for class org.gbif.utils.rs.RsGbifOrg
runAll(String, String, boolean, boolean, RunAllParams, Set<String>) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Runs the last attempt for all datasets.
RunAllParams - Class in org.gbif.api.model.pipelines.ws: Encapsulates the params to pass in the body for the runAll method.
RunAllParams() - Constructor for class org.gbif.api.model.pipelines.ws.RunAllParams
runPipelineAttempt(UUID, String, String, boolean, boolean, Set<String>) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Restart last failed pipelines step for a dataset.
runPipelineAttempt(UUID, int, String, String, boolean, Set<String>) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Re-run a pipeline step.
RunPipelineResponse - Class in org.gbif.api.model.pipelines: Encapsulates the possible response of the request of re-execute a pipeline of dataset and attempt.
RunPipelineResponse() - Constructor for class org.gbif.api.model.pipelines.RunPipelineResponse
RunPipelineResponse(RunPipelineResponse.ResponseStatus, Set<StepType>, Set<StepType>, String) - Constructor for class org.gbif.api.model.pipelines.RunPipelineResponse
RunPipelineResponse.Builder - Class in org.gbif.api.model.pipelines: Builder for RunPipelineResponse.
RunPipelineResponse.ResponseStatus - Enum in org.gbif.api.model.pipelines: Possible response statuses.

S

sameDate(TemporalAccessor, TemporalAccessor) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Given two TemporalAccessor with at least date resolution, this method checks if they represent the same date.
sameOrContained(TemporalAccessor, TemporalAccessor) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Given two TemporalAccessor with possibly different resolutions, this method checks if they represent the same date, or if one is contained within the other.
sameOrContainedOrNull(TemporalAccessor, TemporalAccessor) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Given two TemporalAccessor with possibly different resolutions, this method checks if they represent the same date, or if one is contained within the other.
SAMPLING_EVENT_DATASET_SUBTYPES - Static variable in enum org.gbif.api.vocabulary.DatasetSubtype: A set of all DatasetSubtype that belong to DatasetType SAMPLING_EVENT.
SamplingDescription - Class in org.gbif.api.model.registry.eml
SamplingDescription() - Constructor for class org.gbif.api.model.registry.eml.SamplingDescription
SamplingDescription(String, String, String, List<String>) - Constructor for class org.gbif.api.model.registry.eml.SamplingDescription
scanToChunk(File, long) - Static method in class org.gbif.utils.file.FileSplitter
scientificName() - Method in enum org.gbif.api.vocabulary.Kingdom
search(R) - Method in interface org.gbif.api.service.common.SearchService: Issues a SearchRequest and retrieves a response resulting of the search operation.
search(OccurrencePredicateSearchRequest) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Occurrence search implementation that uses a predicate instead of request parameters.
search(String, Pageable) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Deprecated.
SearchConstants - Class in org.gbif.api.model.common.search: Contains common search constants.
SearchParameter - Interface in org.gbif.api.model.common.search: Interface to be implemented by all search parameter enumerations.
SearchRequest - Class in org.gbif.api.model.collections.request
SearchRequest() - Constructor for class org.gbif.api.model.collections.request.SearchRequest
SearchRequest - Class in org.gbif.api.model.common.search: Generic request class for search operations.
SearchRequest() - Constructor for class org.gbif.api.model.common.search.SearchRequest: Constructor with default paging offset & limit.
SearchRequest(String) - Constructor for class org.gbif.api.model.common.search.SearchRequest: Simple query constructor with default paging offset & limit.
SearchRequest(Pageable) - Constructor for class org.gbif.api.model.common.search.SearchRequest: Minimal paging constructor.
SearchRequest(long, int) - Constructor for class org.gbif.api.model.common.search.SearchRequest: Minimal paging constructor.
SearchRequest.QueryField - Interface in org.gbif.api.model.common.search
SearchResponse<T,P extends SearchParameter> - Class in org.gbif.api.model.common.search: Generic response of a search operation.
SearchResponse() - Constructor for class org.gbif.api.model.common.search.SearchResponse: Default constructor.
SearchResponse(Pageable) - Constructor for class org.gbif.api.model.common.search.SearchResponse: Minimal paging constructor.
SearchResponse(PagingResponse<T>) - Constructor for class org.gbif.api.model.common.search.SearchResponse: Minimal paging constructor.
SearchResponse(long, int) - Constructor for class org.gbif.api.model.common.search.SearchResponse: Minimal paging constructor.
SearchResponse(long, int, Long, List<T>, List<Facet>) - Constructor for class org.gbif.api.model.common.search.SearchResponse: Full constructor.
SearchResult - Class in org.gbif.api.model.pipelines.ws: Models a flat response of a pipeline process search.
SearchResult() - Constructor for class org.gbif.api.model.pipelines.ws.SearchResult
SearchService<T,P extends Enum<?> & SearchParameter,R extends SearchRequest> - Interface in org.gbif.api.service.common: Parameterized generic search interface that supports pagination.
SearchTypeValidator - Class in org.gbif.api.util: Utility class to do basic validation of all search enum based values.
sendAbsentIndentifiersEmail(UUID, int, String) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Deprecated.
SEPARATOR - Static variable in class org.gbif.utils.file.FileSplitter
serialize(BasisOfRecord, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.BasisOfRecordSerde.BasisOfRecordJsonSerializer
serialize(Date, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.DateSerde.NoTimezoneDateJsonSerializer
serialize(Extension, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.ExtensionKeySerializer
serialize(Extension, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.ExtensionSerializer
serialize(IsoDateInterval, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.IsoDateIntervalSerde.IsoDateIntervalSerializer
serialize(License, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.LicenseSerde.LicenseJsonSerializer
serialize(LocalDateTime, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.LocalDateTimeSerDe.LocalDateTimeSerializer
serialize(Map.Entry<Object, Object>, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.MapEntrySerde.MapEntryJsonSerializer: Deprecated.
serialize(Rank, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.RankSerde.RankJsonSerializer
serialize(List<Map<Term, String>>, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.TermMapListSerializer: Deprecated.
serialize(DOI, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.model.common.DOI.DoiSerializer
serialize(Country, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.vocabulary.Country.IsoSerializer
serialize(Country, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.vocabulary.Country.TitleSerializer
serialize(Language, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.vocabulary.Language.IsoKeySerializer
serialize(Language, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.vocabulary.Language.IsoSerializer
ServiceUnavailableException - Exception in org.gbif.api.exception: An unchecked exception that indicates that the service is not available.
ServiceUnavailableException(String, Throwable) - Constructor for exception org.gbif.api.exception.ServiceUnavailableException: Constructor for ServiceUnavailableException.
ServiceUnavailableException(String) - Constructor for exception org.gbif.api.exception.ServiceUnavailableException
setAbbreviatedName(String) - Method in class org.gbif.api.model.registry.CitationContact
setAbbreviation(String) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setAbbreviation(String) - Method in class org.gbif.api.model.registry.Node
setAbbreviation(String) - Method in class org.gbif.api.model.registry.Organization
setAbstract(String) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setAbstract(String) - Method in class org.gbif.api.model.registry.eml.Project
setAccepted(String) - Method in class org.gbif.api.model.checklistbank.NameUsage: Sets the scientific name of the basionym, i.e.
setAccepted(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setAcceptedKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage: Sets the usage key for the accepted name.
setAcceptedKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setAcceptedScientificName(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setAcceptedTaxonKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setAcceptedUsage(RankedName) - Method in class org.gbif.api.v2.NameUsageMatch2
setAcceptedUsageKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setAccessionStatus(AccessionStatus) - Method in class org.gbif.api.model.collections.Collection
setAccessionStatus(AccessionStatus) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
setAccordingTo(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setAccordingTo(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setAccordingTo(String) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
setAccuracy(String) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
setActive(boolean) - Method in class org.gbif.api.model.collections.Collection
setActive(boolean) - Method in interface org.gbif.api.model.collections.CollectionEntity
setActive(boolean) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setActive(boolean) - Method in class org.gbif.api.model.collections.Institution
setActive(boolean) - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
setActive(Boolean) - Method in class org.gbif.api.model.collections.request.SearchRequest
setAdded(Date) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setAdditionalInfo(String) - Method in class org.gbif.api.model.registry.Dataset
setAdditionalNames(List<String>) - Method in class org.gbif.api.model.collections.Institution
setAddress(String) - Method in class org.gbif.api.model.collections.Address
setAddress(Address) - Method in class org.gbif.api.model.collections.Collection
setAddress(List<String>) - Method in class org.gbif.api.model.collections.Contact
setAddress(Address) - Method in interface org.gbif.api.model.collections.Contactable
setAddress(Address) - Method in class org.gbif.api.model.collections.Institution
setAddress(List<String>) - Method in interface org.gbif.api.model.registry.Address
setAddress(List<String>) - Method in class org.gbif.api.model.registry.Contact
setAddress(List<String>) - Method in class org.gbif.api.model.registry.Network
setAddress(List<String>) - Method in class org.gbif.api.model.registry.Node
setAddress(List<String>) - Method in class org.gbif.api.model.registry.Organization
setAgeInDays(Integer) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setAlias(String) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setAllSteps(Set<PipelineStep>) - Method in class org.gbif.api.model.pipelines.WorkflowStep
setAlternativeCode(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setAlternativeCodes(List<AlternativeCode>) - Method in class org.gbif.api.model.collections.Collection
setAlternativeCodes(List<AlternativeCode>) - Method in interface org.gbif.api.model.collections.CollectionEntity
setAlternativeCodes(List<AlternativeCode>) - Method in class org.gbif.api.model.collections.Institution
setAlternativeMatches(AlternativeMatches) - Method in class org.gbif.api.model.collections.lookup.LookupResult
setAlternatives(List<NameUsageMatch>) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setAlternatives(List<String>) - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion: Sets the alternatives for a token.
setAlternatives(List<NameUsageMatch2>) - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
setApiUrl(URI) - Method in class org.gbif.api.model.collections.Collection
setApiUrl(URI) - Method in class org.gbif.api.model.collections.Institution
setAppendixCites(CitesAppendix) - Method in class org.gbif.api.model.checklistbank.Distribution
setApplied(Date) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setApplied(Date) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setAppliedBy(String) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setAppliedBy(String) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setArea(String) - Method in class org.gbif.api.model.checklistbank.VernacularName
setAssociatedSequences(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setAttempt(int) - Method in class org.gbif.api.model.pipelines.IngestionProcess
setAttempt(int) - Method in class org.gbif.api.model.pipelines.PipelineProcess
setAttempt(int) - Method in class org.gbif.api.model.pipelines.ws.PipelineProcessParameters
setAttempt(int) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
setAudience(String) - Method in class org.gbif.api.model.common.MediaObject
setAuthor(String) - Method in class org.gbif.api.model.checklistbank.Reference: Deprecated.
setAuthor(String) - Method in class org.gbif.api.model.collections.suggestions.Change
setAuthors(List<Map<String, Object>>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setAuthorship(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setAuthorship(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setAuthorship(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setBasionym(String) - Method in class org.gbif.api.model.checklistbank.NameUsage: sets the basionym name.
setBasionym(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setBasionymKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setBasionymKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setBasisOfRecord(BasisOfRecord) - Method in class org.gbif.api.model.occurrence.Occurrence
setBed(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setBibliographicCitations(List<Citation>) - Method in class org.gbif.api.model.registry.Dataset
setBoundingBox(BoundingBox) - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
setBracketAuthorship(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setBracketYear(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setCanonicalName(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setCanonicalName(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setCanonicalName(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setCanonicalName(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setCatalogNumber(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setCatalogNumber(String) - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
setCatalogUrl(URI) - Method in class org.gbif.api.model.collections.Collection
setCatalogUrl(URI) - Method in class org.gbif.api.model.collections.Institution
setChanges(List<Change>) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setChanges(List<Change>) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setCharset(String) - Method in class org.gbif.api.model.registry.eml.DataDescription
setCitation(String) - Method in class org.gbif.api.model.checklistbank.Reference
setCitation(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setCitation(Citation) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setCitationProvidedBySource(boolean) - Method in class org.gbif.api.model.registry.Citation
setCitationType(String) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setCitesPermitNumber(String) - Method in class org.gbif.api.model.collections.Institution
setCity(String) - Method in class org.gbif.api.model.collections.Address
setCity(String) - Method in class org.gbif.api.model.collections.Contact
setCity(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setCity(String) - Method in interface org.gbif.api.model.registry.Address
setCity(String) - Method in class org.gbif.api.model.registry.Contact
setCity(String) - Method in class org.gbif.api.model.registry.Network
setCity(String) - Method in class org.gbif.api.model.registry.Node
setCity(String) - Method in class org.gbif.api.model.registry.Organization
setClassification(List<RankedName>) - Method in class org.gbif.api.v2.NameUsageMatch2
setClassKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setClassKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setClassKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setClassKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setClassKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
setClassKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setClazz(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setClazz(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setClazz(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setClazz(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setClazz(String) - Method in interface org.gbif.api.model.common.LinneanClassification
setClazz(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setCode(UUID) - Method in class org.gbif.api.model.ChallengeCode
setCode(String) - Method in class org.gbif.api.model.collections.AlternativeCode
setCode(String) - Method in class org.gbif.api.model.collections.Collection
setCode(String) - Method in interface org.gbif.api.model.collections.CollectionEntity
setCode(String) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setCode(String) - Method in class org.gbif.api.model.collections.Institution
setCode(String) - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
setCode(String) - Method in class org.gbif.api.model.collections.OccurrenceMapping
setCode(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setCode(String) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setCode(Integer) - Method in enum org.gbif.api.model.common.messaging.Response.StatusCode
setCode(String) - Method in class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
setColCoveragePct(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCollection(Collection) - Method in class org.gbif.api.model.collections.view.CollectionView
setCollectionCode(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setCollectionCode(String) - Method in class org.gbif.api.model.collections.CollectionImportParams
setCollectionCode(String) - Method in class org.gbif.api.model.collections.lookup.LookupParams
setCollectionCode(String) - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
setCollectionId(String) - Method in class org.gbif.api.model.collections.lookup.LookupParams
setCollectionKey(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setCollectionMatch(Match<CollectionMatched>) - Method in class org.gbif.api.model.collections.lookup.LookupResult
setCollectionMatches(List<Match<CollectionMatched>>) - Method in class org.gbif.api.model.collections.lookup.AlternativeMatches
setCollections(List<Collection>) - Method in class org.gbif.api.model.registry.Dataset
setCollectionSummary(Map<String, Integer>) - Method in class org.gbif.api.model.collections.Collection
setColMatchingCount(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCombinations(List<NameUsage>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setComments(List<Comment>) - Method in class org.gbif.api.model.collections.Collection
setComments(List<Comment>) - Method in class org.gbif.api.model.collections.Institution
setComments(List<String>) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setComments(List<String>) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setComments(List<Comment>) - Method in interface org.gbif.api.model.registry.Commentable
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Dataset
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Installation
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Network
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Node
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Organization
setCommonName(String) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
setConfidence(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setConfidence(Integer) - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
setConfirmationKey(UUID) - Method in class org.gbif.api.model.registry.ConfirmationKeyParameter
setConstituentKey(UUID) - Method in class org.gbif.api.model.checklistbank.NameUsage
setConstituentKey(UUID) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setContact(UUID) - Method in class org.gbif.api.model.collections.request.SearchRequest
setContactPersons(List<Contact>) - Method in class org.gbif.api.model.collections.Collection
setContactPersons(List<Contact>) - Method in interface org.gbif.api.model.collections.Contactable
setContactPersons(List<Contact>) - Method in class org.gbif.api.model.collections.Institution
setContacts(List<Contact>) - Method in interface org.gbif.api.model.registry.Contactable
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Dataset
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.eml.Project
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Installation
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Network
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Node
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Organization
setContactsCitation(List<CitationContact>) - Method in class org.gbif.api.model.registry.Dataset
setContent(T) - Method in class org.gbif.api.model.common.messaging.Response
setContent(String) - Method in class org.gbif.api.model.registry.Comment
setContent(String) - Method in class org.gbif.api.model.registry.Metadata
setContentTypes(List<CollectionContentType>) - Method in class org.gbif.api.model.collections.Collection
setContentTypes(List<CollectionContentType>) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
setContext(Map<String, String>) - Method in class org.gbif.api.model.common.messaging.Request
setContinent(Continent) - Method in class org.gbif.api.model.occurrence.Occurrence
setContinent(Continent) - Method in class org.gbif.api.model.registry.Node
setContinent(Set<Continent>) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setContributor(String) - Method in class org.gbif.api.model.checklistbank.Description
setContributor(String) - Method in class org.gbif.api.model.common.MediaObject
setConvertedToCollection(UUID) - Method in class org.gbif.api.model.collections.Institution
setCoordinateAccuracy(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setCoordinatePrecision(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setCoordinateUncertaintyInMeters(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setCoreField(Term, String) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage: For setting a specific field without having to replace the entire fields Map.
setCorrectlySpelled(boolean) - Method in class org.gbif.api.model.common.search.SpellCheckResponse: Sets the misspelling flag.
setCount(Long) - Method in class org.gbif.api.model.common.paging.PagingResponse: Sets the total count for all results, not only the ones in this response page.
setCount(Long) - Method in class org.gbif.api.model.common.search.Facet.Count: Sets the count of occurrences for this category.
setCount(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
setCount(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
setCountByConstituent(Map<UUID, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCountByIssue(Map<NameUsageIssue, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCountByKingdom(Map<Kingdom, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCountByOrigin(Map<Origin, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCountByRank(Map<Rank, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCountExtRecordsByExtension(Map<Extension, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCountNamesByLanguage(Map<Language, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCountriesOfCoverage(Set<Country>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setCountriesOfResearcher(Set<Country>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setCountry(Country) - Method in class org.gbif.api.model.checklistbank.Distribution
setCountry(Country) - Method in class org.gbif.api.model.checklistbank.VernacularName
setCountry(Country) - Method in class org.gbif.api.model.collections.Address
setCountry(Country) - Method in class org.gbif.api.model.collections.Contact
setCountry(Country) - Method in class org.gbif.api.model.collections.lookup.LookupParams
setCountry(List<Country>) - Method in class org.gbif.api.model.collections.request.SearchRequest
setCountry(Country) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setCountry(Country) - Method in class org.gbif.api.model.occurrence.Occurrence
setCountry(Country) - Method in interface org.gbif.api.model.registry.Address
setCountry(Country) - Method in class org.gbif.api.model.registry.Contact
setCountry(Country) - Method in class org.gbif.api.model.registry.Network
setCountry(Country) - Method in class org.gbif.api.model.registry.Node
setCountry(Country) - Method in class org.gbif.api.model.registry.Organization
setCountryCoverage(Set<Country>) - Method in class org.gbif.api.model.registry.Dataset
setCountryCoverage(Set<Country>) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setCounts(List<Facet.Count>) - Method in class org.gbif.api.model.common.search.Facet: Sets the list of counts/categories for this faceted field.
setCoverages(List<TaxonomicCoverage>) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
setCrawlContext(String) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setCrawlId(Integer) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setCrawlInfo(DatasetProcessStatus) - Method in class org.gbif.api.model.pipelines.IngestionProcess
setCrawlJob(CrawlJob) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setCreated(Date) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setCreated(Date) - Method in class org.gbif.api.model.collections.Collection
setCreated(Date) - Method in interface org.gbif.api.model.collections.CollectionEntity
setCreated(Date) - Method in class org.gbif.api.model.collections.Contact
setCreated(Date) - Method in class org.gbif.api.model.collections.Institution
setCreated(Date) - Method in class org.gbif.api.model.collections.MasterSourceMetadata
setCreated(Date) - Method in class org.gbif.api.model.collections.OccurrenceMapping
setCreated(Date) - Method in class org.gbif.api.model.collections.suggestions.Change
setCreated(Date) - Method in class org.gbif.api.model.common.MediaObject
setCreated(Date) - Method in class org.gbif.api.model.occurrence.Download
setCreated(LocalDateTime) - Method in class org.gbif.api.model.pipelines.PipelineExecution
setCreated(LocalDateTime) - Method in class org.gbif.api.model.pipelines.PipelineProcess
setCreated(Date) - Method in class org.gbif.api.model.registry.Comment
setCreated(Date) - Method in class org.gbif.api.model.registry.Contact
setCreated(Date) - Method in class org.gbif.api.model.registry.Dataset: Autoassigned in the database table, ignored when persisted.
setCreated(Date) - Method in class org.gbif.api.model.registry.Endpoint
setCreated(Date) - Method in class org.gbif.api.model.registry.Identifier
setCreated(Date) - Method in class org.gbif.api.model.registry.Installation
setCreated(Date) - Method in class org.gbif.api.model.registry.MachineTag
setCreated(Date) - Method in class org.gbif.api.model.registry.Metadata
setCreated(Date) - Method in class org.gbif.api.model.registry.Network
setCreated(Date) - Method in interface org.gbif.api.model.registry.NetworkEntity
setCreated(Date) - Method in class org.gbif.api.model.registry.Node
setCreated(Date) - Method in class org.gbif.api.model.registry.Organization
setCreated(Date) - Method in class org.gbif.api.model.registry.Tag
setCreatedBy(String) - Method in class org.gbif.api.model.collections.Collection
setCreatedBy(String) - Method in interface org.gbif.api.model.collections.CollectionEntity
setCreatedBy(String) - Method in class org.gbif.api.model.collections.Contact
setCreatedBy(String) - Method in class org.gbif.api.model.collections.Institution
setCreatedBy(String) - Method in class org.gbif.api.model.collections.MasterSourceMetadata
setCreatedBy(String) - Method in class org.gbif.api.model.collections.OccurrenceMapping
setCreatedBy(String) - Method in class org.gbif.api.model.pipelines.PipelineExecution
setCreatedBy(String) - Method in class org.gbif.api.model.pipelines.PipelineProcess
setCreatedBy(String) - Method in class org.gbif.api.model.pipelines.PipelineStep
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Comment
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Contact
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Endpoint
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Identifier
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Installation
setCreatedBy(String) - Method in class org.gbif.api.model.registry.MachineTag
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Metadata
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Network
setCreatedBy(String) - Method in interface org.gbif.api.model.registry.NetworkEntity
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Node
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Organization
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Tag
setCreator(String) - Method in class org.gbif.api.model.checklistbank.Description
setCreator(String) - Method in class org.gbif.api.model.common.MediaObject
setCreator(String) - Method in class org.gbif.api.model.occurrence.DownloadRequest
setCultivarEpithet(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setCuratorialUnits(List<CuratorialUnitComposite>) - Method in class org.gbif.api.model.registry.Dataset
setCuratorialUnits(List<CuratorialUnitComposite>) - Method in class org.gbif.api.model.registry.eml.Collection
setData(String) - Method in class org.gbif.api.model.ChallengeCode
setDataDescriptions(List<DataDescription>) - Method in class org.gbif.api.model.registry.Dataset
setDataLanguage(Language) - Method in class org.gbif.api.model.registry.Dataset
setDatasetCitation(String) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
setDatasetDOI(DOI) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
setDatasetID(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setDatasetKey(UUID) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setDatasetKey(UUID) - Method in class org.gbif.api.model.checklistbank.NameUsage
setDatasetKey(UUID) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setDatasetKey(UUID) - Method in class org.gbif.api.model.collections.CollectionImportParams
setDatasetKey(UUID) - Method in class org.gbif.api.model.collections.lookup.LookupParams
setDatasetKey(UUID) - Method in class org.gbif.api.model.collections.OccurrenceMapping
setDatasetKey(UUID) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setDatasetKey(UUID) - Method in class org.gbif.api.model.occurrence.DownloadStatistics
setDatasetKey(UUID) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setDatasetKey(UUID) - Method in class org.gbif.api.model.pipelines.IngestionProcess
setDatasetKey(UUID) - Method in class org.gbif.api.model.pipelines.PipelineProcess
setDatasetKey(UUID) - Method in class org.gbif.api.model.pipelines.ws.PipelineProcessParameters
setDatasetKey(UUID) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
setDatasetKey(UUID) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
setDatasetKey(UUID) - Method in class org.gbif.api.model.registry.Metadata
setDatasetName(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setDatasetsToExclude(List<UUID>) - Method in class org.gbif.api.model.pipelines.ws.RunAllParams
setDatasetsToInclude(List<UUID>) - Method in class org.gbif.api.model.pipelines.ws.RunAllParams
setDatasetTitle(String) - Method in class org.gbif.api.model.pipelines.IngestionProcess
setDatasetTitle(String) - Method in class org.gbif.api.model.pipelines.PipelineProcess
setDatasetTitle(String) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
setDate(String) - Method in class org.gbif.api.model.checklistbank.Reference: Deprecated.
setDate(Date) - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
setDateIdentified(Date) - Method in class org.gbif.api.model.occurrence.Occurrence
setDateSignedMOU(Date) - Method in class org.gbif.api.model.registry.Node
setDay(Integer) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setDay(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setDecades(List<Integer>) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setDecimalLatitude(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setDecimalLongitude(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setDeclaredCount(Long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setDegreeOfEstablishment(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setDeleted(Date) - Method in class org.gbif.api.model.checklistbank.NameUsage
setDeleted(Date) - Method in class org.gbif.api.model.collections.Collection
setDeleted(Date) - Method in interface org.gbif.api.model.collections.CollectionEntity
setDeleted(Date) - Method in class org.gbif.api.model.collections.Institution
setDeleted(Date) - Method in class org.gbif.api.model.common.AbstractGbifUser
setDeleted(Date) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setDeleted(Date) - Method in class org.gbif.api.model.registry.Installation
setDeleted(Date) - Method in class org.gbif.api.model.registry.Network
setDeleted(Date) - Method in interface org.gbif.api.model.registry.NetworkEntity
setDeleted(Date) - Method in class org.gbif.api.model.registry.Node
setDeleted(Date) - Method in class org.gbif.api.model.registry.Organization
setDelimiter(String) - Method in class org.gbif.utils.file.csv.CSVReaderFactory.CSVMetadata
setDelimiter(Character) - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
setDepartment(String) - Method in class org.gbif.api.model.collections.Collection
setDepth(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setDepthAccuracy(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setDescription(String) - Method in class org.gbif.api.model.checklistbank.Description
setDescription(String) - Method in class org.gbif.api.model.collections.AlternativeCode
setDescription(String) - Method in class org.gbif.api.model.collections.Collection
setDescription(String) - Method in interface org.gbif.api.model.collections.CollectionEntity
setDescription(String) - Method in class org.gbif.api.model.collections.Institution
setDescription(String) - Method in class org.gbif.api.model.common.MediaObject
setDescription(String) - Method in class org.gbif.api.model.registry.Contact
setDescription(String) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setDescription(String) - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
setDescription(String) - Method in class org.gbif.api.model.registry.eml.Project
setDescription(String) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
setDescription(String) - Method in class org.gbif.api.model.registry.Endpoint
setDescription(String) - Method in class org.gbif.api.model.registry.Installation
setDescription(String) - Method in class org.gbif.api.model.registry.Network
setDescription(String) - Method in interface org.gbif.api.model.registry.NetworkEntity
setDescription(String) - Method in class org.gbif.api.model.registry.Node
setDescription(String) - Method in class org.gbif.api.model.registry.Organization
setDescription(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setDescription(String) - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
setDescriptions(List<Description>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setDescriptions(List<Description>) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setDesignDescription(String) - Method in class org.gbif.api.model.registry.eml.Project
setDetails(String) - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
setDeterminedBy(String) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
setDeterminedDate(String) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
setDeviation(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
setDeviation(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
setDiagnostics(NameUsageMatch2.Diagnostics) - Method in class org.gbif.api.v2.NameUsageMatch2
setDimensions(Set<Dimension<?>>) - Method in class org.gbif.api.model.metrics.cube.Rollup: Where possible use the constructor and not this version
setDisabled(boolean) - Method in class org.gbif.api.model.registry.Installation
setDiscarded(Date) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setDiscarded(Date) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setDiscardedBy(String) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setDiscardedBy(String) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setDisciplines(List<Discipline>) - Method in class org.gbif.api.model.collections.Institution
setDisciplines(List<Discipline>) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest
setDiscovered(String) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setDisplayOnNHCPortal(Boolean) - Method in class org.gbif.api.model.collections.Collection
setDisplayOnNHCPortal(Boolean) - Method in interface org.gbif.api.model.collections.CollectionEntity
setDisplayOnNHCPortal(Boolean) - Method in class org.gbif.api.model.collections.Institution
setDisplayOnNHCPortal(Boolean) - Method in class org.gbif.api.model.collections.request.SearchRequest
setDisplayOnNHCPortal(boolean) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setDistanceFromCentroidInMeters(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setDistinctNamesCount(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setDistributions(List<Distribution>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setDivision(String) - Method in class org.gbif.api.model.collections.Collection
setDoi(String) - Method in class org.gbif.api.model.checklistbank.Reference
setDoi(DOI) - Method in class org.gbif.api.model.collections.Collection
setDoi(String) - Method in class org.gbif.api.model.literature.search.LiteratureSearchRequest
setDoi(DOI) - Method in class org.gbif.api.model.occurrence.Download
setDoi(DOI) - Method in class org.gbif.api.model.registry.Dataset
setDoi(DOI) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setDownload(Download) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
setDownloaded(Date) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setDownloadKey(String) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
setDownloadLink(String) - Method in class org.gbif.api.model.occurrence.Download
setDuplicateOfDatasetKey(UUID) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setDuplicates(List<Set<Duplicate>>) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesResult
setEarliestAgeOrLowestStage(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setEarliestEonOrLowestEonothem(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setEarliestEpochOrLowestSeries(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setEarliestEraOrLowestErathem(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setEarliestPeriodOrLowestSystem(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setElevation(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setElevationAccuracy(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setEmail(List<String>) - Method in class org.gbif.api.model.collections.Collection
setEmail(List<String>) - Method in interface org.gbif.api.model.collections.CollectionEntity
setEmail(List<String>) - Method in class org.gbif.api.model.collections.Contact
setEmail(List<String>) - Method in class org.gbif.api.model.collections.Institution
setEmail(String) - Method in class org.gbif.api.model.common.AbstractGbifUser
setEmail(String) - Method in class org.gbif.api.model.common.User: Deprecated.
setEmail(List<String>) - Method in interface org.gbif.api.model.registry.Address
setEmail(List<String>) - Method in class org.gbif.api.model.registry.Contact
setEmail(List<String>) - Method in class org.gbif.api.model.registry.Network
setEmail(List<String>) - Method in class org.gbif.api.model.registry.Node
setEmail(List<String>) - Method in class org.gbif.api.model.registry.Organization
setEncoding(Charset) - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
setEnd(Date) - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
setEndDayOfYear(Integer) - Method in class org.gbif.api.model.checklistbank.Distribution
setEndDayOfYear(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setEndOfRecords(boolean) - Method in class org.gbif.api.model.common.paging.PagingResponse: Manually sets the end of records flag.
setEndorsed(Date) - Method in class org.gbif.api.model.registry.Organization
setEndorsementApproved(boolean) - Method in class org.gbif.api.model.registry.Organization
setEndorsementStatus(EndorsementStatus) - Method in class org.gbif.api.model.registry.Organization
setEndorsingNodeKey(UUID) - Method in class org.gbif.api.model.registry.Organization
setEndorsingNodeKey(UUID) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Dataset
setEndpoints(List<Endpoint>) - Method in interface org.gbif.api.model.registry.Endpointable
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Installation
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Network
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Node
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Organization
setEntityCountry(Country) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setEntityCountry(Country) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setEntityCreatedKey(UUID) - Method in class org.gbif.api.model.collections.suggestions.ApplySuggestionResult
setEntityKey(UUID) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setEntityKey(UUID) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setEntityMatched(T) - Method in class org.gbif.api.model.collections.lookup.Match
setEntityName(String) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setEntityName(String) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setEraseAfter(Date) - Method in class org.gbif.api.model.occurrence.Download
setErasureNotification(Date) - Method in class org.gbif.api.model.occurrence.Download
setEstablishedDate(String) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
setEstablishmentMeans(EstablishmentMeans) - Method in class org.gbif.api.model.checklistbank.Distribution
setEstablishmentMeans(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setEventDate(IsoDateInterval) - Method in class org.gbif.api.model.occurrence.Occurrence
setExcludeKeys(List<UUID>) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setExecutionKey(int) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
setExecutions(Set<PipelineExecution>) - Method in class org.gbif.api.model.pipelines.PipelineProcess
setExtended(boolean) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
setExtensions(Map<Extension, List<Map<Term, String>>>) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
setExtensions(Map<String, List<Map<Term, String>>>) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setExternal(boolean) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setExtinct(Boolean) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setExtinct(Boolean) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setFacetLimit(Integer) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
setFacetMinCount(Integer) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
setFacetOffset(Integer) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
setFacetPages(Map<P, Pageable>) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
setFacets(Set) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest: Sets the list of facets.
setFacets(List<Facet>) - Method in class org.gbif.api.model.common.search.SearchResponse: Sets the list of facets.
setFacts(List<MeasurementOrFact>) - Method in class org.gbif.api.model.occurrence.Occurrence
setFamily(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setFamily(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setFamily(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setFamily(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setFamily(String) - Method in interface org.gbif.api.model.common.LinneanClassification
setFamily(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setFamilyKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setFamilyKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setFamilyKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setFamilyKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setFamilyKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
setFamilyKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setFax(List<String>) - Method in class org.gbif.api.model.collections.Contact
setField(String) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse.Match
setField(String) - Method in class org.gbif.api.model.collections.suggestions.Change
setField(T) - Method in class org.gbif.api.model.common.search.Facet: Sets the field of the facet.
setFieldName(String) - Method in class org.gbif.api.model.collections.SourceableField
setFields(Map<Term, String>) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
setFinished(boolean) - Method in class org.gbif.api.model.pipelines.PipelineExecution
setFinished(LocalDateTime) - Method in class org.gbif.api.model.pipelines.PipelineStep
setFinishedCrawling(Date) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setFinishReason(FinishReason) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setFirstName(String) - Method in class org.gbif.api.model.collections.Contact
setFirstName(String) - Method in class org.gbif.api.model.common.AbstractGbifUser
setFirstName(String) - Method in class org.gbif.api.model.common.User: Deprecated.
setFirstName(String) - Method in class org.gbif.api.model.registry.CitationContact
setFirstName(String) - Method in class org.gbif.api.model.registry.Contact
setFormat(String) - Method in class org.gbif.api.model.common.MediaObject
setFormat(DownloadFormat) - Method in class org.gbif.api.model.occurrence.DownloadRequest: This parameter determines the output format of the requested download.
setFormat(String) - Method in class org.gbif.api.model.registry.eml.DataDescription
setFormation(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setFormatVersion(String) - Method in class org.gbif.api.model.registry.eml.DataDescription
setFoundingDate(Integer) - Method in class org.gbif.api.model.collections.Institution
setFragmentsEmitted(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setFragmentsProcessed(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setFragmentsReceived(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setFreshwater(Boolean) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setFrom(Temporal) - Method in class org.gbif.api.util.IsoDateInterval
setFrom(String) - Method in class org.gbif.api.util.IsoDateInterval
setFullText(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setFunding(String) - Method in class org.gbif.api.model.registry.eml.Project
setFuzzyName(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setGadm(Gadm) - Method in class org.gbif.api.model.occurrence.Occurrence
setGbifDownloadKey(List<String>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setGbifHigherTaxonKey(List<Integer>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setGbifNetworkKey(List<UUID>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setGbifOccurrenceKey(List<Long>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setGbifProgramme(List<String>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setGbifProjectIdentifier(List<String>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setGbifRegion(List<GbifRegion>) - Method in class org.gbif.api.model.collections.request.SearchRequest
setGbifRegion(Set<GbifRegion>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setGbifRegion(GbifRegion) - Method in class org.gbif.api.model.registry.Node
setGbifTaxonKey(List<Integer>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setGenerationDate(LocalDateTime) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesResult
setGenericName(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setGenus(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setGenus(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setGenus(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setGenus(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setGenus(String) - Method in interface org.gbif.api.model.common.LinneanClassification
setGenus(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setGenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setGenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setGenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setGenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setGenusKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
setGenusKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setGenusOrAbove(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setGeographicCoverageDescription(String) - Method in class org.gbif.api.model.registry.Dataset
setGeographicCoverages(List<GeospatialCoverage>) - Method in class org.gbif.api.model.registry.Dataset
setGeographicDescription(String) - Method in class org.gbif.api.model.collections.Institution
setGeography(String) - Method in class org.gbif.api.model.collections.Collection
setGeoreferencedBy(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setGid(String) - Method in class org.gbif.api.model.occurrence.GadmFeature
setGlobalCoverage(double, double, double, double) - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox: Set whether this binding box represents global coverage or not.
setGroup(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setHabitat(String) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setHabitats(List<Habitat>) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setHigherGeography(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setHigherRank(LinneanClassification, Rank, String) - Static method in class org.gbif.api.util.ClassificationUtils: Sets a higher taxon property by passing the rank of it.
setHigherRank(T, Rank, String, Integer) - Static method in class org.gbif.api.util.ClassificationUtils: Sets a higher taxon property by passing the rank of it.
setHigherRankKey(LinneanClassificationKeys, Rank, Integer) - Static method in class org.gbif.api.util.ClassificationUtils: Sets a higher taxon property by passing the rank of it.
setHighestBiostratigraphicZone(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setHighlight(boolean) - Method in class org.gbif.api.model.common.search.SearchRequest
setHighlightContext(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
setHighlightContext(Integer) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
setHighlightFields(Set<SearchRequest.QueryField>) - Method in class org.gbif.api.model.common.search.SearchRequest
setHomepage(URI) - Method in class org.gbif.api.model.collections.Collection
setHomepage(URI) - Method in class org.gbif.api.model.collections.Institution
setHomepage(List<URI>) - Method in interface org.gbif.api.model.registry.Address
setHomepage(List<URI>) - Method in class org.gbif.api.model.registry.Contact
setHomepage(URI) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setHomepage(List<URI>) - Method in class org.gbif.api.model.registry.Network
setHomepage(List<URI>) - Method in class org.gbif.api.model.registry.Node
setHomepage(List<URI>) - Method in class org.gbif.api.model.registry.Organization
setHostingCountry(Country) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setHostingOrganizationKey(UUID) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setHostingOrganizationKey(UUID) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setHostingOrganizationTitle(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setHybrid(Boolean) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setHybridFormula(boolean) - Method in class org.gbif.api.model.checklistbank.ParsedName
setId(String) - Method in class org.gbif.api.model.collections.UserId
setId(UUID) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setId(String) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
setId(String) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
setId(String) - Method in class org.gbif.api.v2.NameUsageMatch2.Nomenclature
setIdentifiedBy(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setIdentifiedByIds(List<AgentIdentifier>) - Method in class org.gbif.api.model.occurrence.Occurrence
setIdentifier(String) - Method in class org.gbif.api.model.collections.OccurrenceMapping
setIdentifier(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setIdentifier(String) - Method in class org.gbif.api.model.common.Identifier
setIdentifier(URI) - Method in class org.gbif.api.model.common.MediaObject
setIdentifier(String) - Method in class org.gbif.api.model.registry.Citation
setIdentifier(String) - Method in class org.gbif.api.model.registry.eml.Collection
setIdentifier(String) - Method in class org.gbif.api.model.registry.eml.Project
setIdentifier(String) - Method in class org.gbif.api.model.registry.Identifier
setIdentifiers(List<Identifier>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setIdentifiers(List<Identifier>) - Method in class org.gbif.api.model.collections.Collection
setIdentifiers(List<Identifier>) - Method in class org.gbif.api.model.collections.Institution
setIdentifiers(Map<String, Object>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setIdentifiers(List<Identifier>) - Method in class org.gbif.api.model.occurrence.Occurrence
setIdentifiers(List<Identifier>) - Method in class org.gbif.api.model.registry.Dataset
setIdentifiers(List<Identifier>) - Method in interface org.gbif.api.model.registry.Identifiable
setIdentifiers(List<Identifier>) - Method in class org.gbif.api.model.registry.Installation
setIdentifiers(List<Identifier>) - Method in class org.gbif.api.model.registry.Network
setIdentifiers(List<Identifier>) - Method in class org.gbif.api.model.registry.Node
setIdentifiers(List<Identifier>) - Method in class org.gbif.api.model.registry.Organization
setIdentifierType(IdentifierType) - Method in class org.gbif.api.model.collections.request.SearchRequest
setIdigbio(boolean) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setIh(boolean) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setImportantCollectors(List<String>) - Method in class org.gbif.api.model.collections.Collection
setIncorporatedCollections(List<String>) - Method in class org.gbif.api.model.collections.Collection
setInCountries(List<String>) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setIndexHerbariorumRecord(boolean) - Method in class org.gbif.api.model.collections.Collection
setIndexHerbariorumRecord(boolean) - Method in class org.gbif.api.model.collections.Institution
setIndividualCount(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setInfraGeneric(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setInfraSpecificEpithet(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setInfraspecificEpithet(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setInInstitutions(List<UUID>) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setInstallationKey(UUID) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setInstallationKey(UUID) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setInstallationKey(UUID) - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
setInstitution(UUID) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
setInstitutionalGovernance(InstitutionGovernance) - Method in class org.gbif.api.model.collections.Institution
setInstitutionalGovernance(InstitutionGovernance) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest
setInstitutionCode(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setInstitutionCode(String) - Method in class org.gbif.api.model.collections.InstitutionImportParams
setInstitutionCode(String) - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
setInstitutionCode(String) - Method in class org.gbif.api.model.collections.lookup.LookupParams
setInstitutionCode(String) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setInstitutionCode(String) - Method in class org.gbif.api.model.collections.view.CollectionView
setInstitutionCode(String) - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
setInstitutionForConvertedCollection(UUID) - Method in class org.gbif.api.model.collections.suggestions.InstitutionChangeSuggestion
setInstitutionForNewCollectionKey(UUID) - Method in class org.gbif.api.model.collections.merge.ConvertToCollectionParams
setInstitutionId(String) - Method in class org.gbif.api.model.collections.lookup.LookupParams
setInstitutionKey(UUID) - Method in class org.gbif.api.model.collections.Collection
setInstitutionKey(UUID) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setInstitutionKey(UUID) - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
setInstitutionKey(UUID) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setInstitutionKey(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setInstitutionKeys(List<UUID>) - Method in class org.gbif.api.model.collections.request.SearchRequest
setInstitutionLink(URI) - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
setInstitutionMatch(Match<InstitutionMatched>) - Method in class org.gbif.api.model.collections.lookup.LookupResult
setInstitutionMatches(List<Match<InstitutionMatched>>) - Method in class org.gbif.api.model.collections.lookup.AlternativeMatches
setInstitutionName(String) - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
setInstitutionName(String) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setInstitutionName(String) - Method in class org.gbif.api.model.collections.view.CollectionView
setInterpreted(I) - Method in class org.gbif.api.model.common.InterpretedField: Deprecated.
setInterpretedOccurrencesPersistedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setInterpretedOccurrencesPersistedSuccessful(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setIsInCluster(boolean) - Method in class org.gbif.api.model.occurrence.Occurrence
setIsSequenced(boolean) - Method in class org.gbif.api.model.occurrence.Occurrence
setIssues(Set<NameUsageIssue>) - Method in class org.gbif.api.model.checklistbank.NameUsage
setIssues(Set<OccurrenceIssue>) - Method in class org.gbif.api.model.occurrence.Occurrence
setIucnRedListCategory(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setKey(Integer) - Method in class org.gbif.api.model.ChallengeCode
setKey(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setKey(Integer) - Method in class org.gbif.api.model.checklistbank.Description
setKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setKey(Integer) - Method in class org.gbif.api.model.checklistbank.ParsedName
setKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setKey(Integer) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
setKey(Integer) - Method in class org.gbif.api.model.collections.Address
setKey(UUID) - Method in class org.gbif.api.model.collections.Collection
setKey(UUID) - Method in interface org.gbif.api.model.collections.CollectionEntity
setKey(Integer) - Method in class org.gbif.api.model.collections.Contact
setKey(UUID) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setKey(UUID) - Method in class org.gbif.api.model.collections.Institution
setKey(UUID) - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
setKey(Integer) - Method in class org.gbif.api.model.collections.MasterSourceMetadata
setKey(Integer) - Method in class org.gbif.api.model.collections.OccurrenceMapping
setKey(UUID) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setKey(Integer) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setKey(Integer) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setKey(Integer) - Method in class org.gbif.api.model.common.GbifUser
setKey(Integer) - Method in class org.gbif.api.model.common.User: Deprecated.
setKey(String) - Method in class org.gbif.api.model.metrics.cube.Dimension
setKey(String) - Method in class org.gbif.api.model.occurrence.Download
setKey(Long) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setKey(long) - Method in class org.gbif.api.model.pipelines.PipelineExecution
setKey(long) - Method in class org.gbif.api.model.pipelines.PipelineStep
setKey(Integer) - Method in class org.gbif.api.model.registry.CitationContact
setKey(Integer) - Method in class org.gbif.api.model.registry.Comment
setKey(Integer) - Method in class org.gbif.api.model.registry.Contact
setKey(UUID) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setKey(Integer) - Method in class org.gbif.api.model.registry.Endpoint
setKey(Integer) - Method in class org.gbif.api.model.registry.Identifier
setKey(UUID) - Method in class org.gbif.api.model.registry.Installation
setKey(Integer) - Method in class org.gbif.api.model.registry.MachineTag
setKey(Integer) - Method in class org.gbif.api.model.registry.Metadata
setKey(UUID) - Method in class org.gbif.api.model.registry.Network
setKey(UUID) - Method in interface org.gbif.api.model.registry.NetworkEntity
setKey(UUID) - Method in class org.gbif.api.model.registry.Node
setKey(UUID) - Method in class org.gbif.api.model.registry.Organization
setKey(UUID) - Method in class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
setKey(UUID) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setKey(UUID) - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
setKey(UUID) - Method in class org.gbif.api.model.registry.search.KeyTitleResult
setKey(Integer) - Method in class org.gbif.api.model.registry.Tag
setKey(int) - Method in class org.gbif.api.v2.RankedName
setKeywordCollections(List<KeywordCollection>) - Method in class org.gbif.api.model.registry.Dataset
setKeywords(List<String>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setKeywords(Set<String>) - Method in class org.gbif.api.model.registry.eml.KeywordCollection
setKeywords(List<String>) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setKingdom(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setKingdom(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setKingdom(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setKingdom(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setKingdom(String) - Method in interface org.gbif.api.model.common.LinneanClassification
setKingdom(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setKingdomKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setKingdomKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setKingdomKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setKingdomKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setKingdomKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
setKingdomKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setLanguage(Language) - Method in class org.gbif.api.model.checklistbank.Description
setLanguage(Language) - Method in class org.gbif.api.model.checklistbank.VernacularName
setLanguage(Language) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setLanguage(Language) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setLanguage(Language) - Method in class org.gbif.api.model.registry.Network
setLanguage(Language) - Method in class org.gbif.api.model.registry.Organization
setLastCrawled(Date) - Method in class org.gbif.api.model.checklistbank.NameUsage
setLastCrawled(Date) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
setLastCrawled(Date) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setLastInterpreted(Date) - Method in class org.gbif.api.model.checklistbank.NameUsage
setLastInterpreted(Date) - Method in class org.gbif.api.model.occurrence.Occurrence
setLastLogin(Date) - Method in class org.gbif.api.model.common.GbifUser
setLastLogin(Date) - Method in class org.gbif.api.model.common.User: Deprecated.
setLastName(String) - Method in class org.gbif.api.model.collections.Contact
setLastName(String) - Method in class org.gbif.api.model.common.AbstractGbifUser
setLastName(String) - Method in class org.gbif.api.model.common.User: Deprecated.
setLastName(String) - Method in class org.gbif.api.model.registry.CitationContact
setLastName(String) - Method in class org.gbif.api.model.registry.Contact
setLastParsed(Date) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setLastStep(PipelineStep) - Method in class org.gbif.api.model.pipelines.WorkflowStep
setLatestAgeOrHighestStage(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setLatestEonOrHighestEonothem(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setLatestEpochOrHighestSeries(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setLatestEraOrHighestErathem(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setLatestPeriodOrHighestSystem(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setLatitude(BigDecimal) - Method in class org.gbif.api.model.collections.Institution
setLatitude(double) - Method in class org.gbif.api.model.registry.eml.geospatial.Point
setLatitude(BigDecimal) - Method in class org.gbif.api.model.registry.Organization
setLevel0(GadmFeature) - Method in class org.gbif.api.model.occurrence.Gadm
setLevel1(GadmFeature) - Method in class org.gbif.api.model.occurrence.Gadm
setLevel2(GadmFeature) - Method in class org.gbif.api.model.occurrence.Gadm
setLevel3(GadmFeature) - Method in class org.gbif.api.model.occurrence.Gadm
setLicense(String) - Method in class org.gbif.api.model.checklistbank.Description
setLicense(String) - Method in class org.gbif.api.model.common.MediaObject
setLicense(License) - Method in class org.gbif.api.model.occurrence.Download
setLicense(License) - Method in class org.gbif.api.model.occurrence.Occurrence
setLicense(License) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setLicense(License) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setLifeForm(String) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setLifeStage(LifeStage) - Method in class org.gbif.api.model.checklistbank.Distribution
setLifeStage(LifeStage) - Method in class org.gbif.api.model.checklistbank.VernacularName
setLifeStage(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setLimit(int) - Method in class org.gbif.api.model.common.paging.PageableBase
setLineage(List<String>) - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
setLinesPerMemorySort(int) - Static method in class org.gbif.utils.file.FileUtils
setLink(String) - Method in class org.gbif.api.model.checklistbank.Reference
setLiteratureType(LiteratureType) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setLivingPeriod(String) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setLocality(String) - Method in class org.gbif.api.model.checklistbank.Distribution
setLocality(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setLocationId(String) - Method in class org.gbif.api.model.checklistbank.Distribution
setLockedForAutoUpdate(boolean) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setLogoUrl(URI) - Method in class org.gbif.api.model.collections.Institution
setLogoUrl(URI) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setLogoUrl(URI) - Method in class org.gbif.api.model.registry.Network
setLogoUrl(URI) - Method in class org.gbif.api.model.registry.Node
setLogoUrl(URI) - Method in class org.gbif.api.model.registry.Organization
setLongitude(BigDecimal) - Method in class org.gbif.api.model.collections.Institution
setLongitude(double) - Method in class org.gbif.api.model.registry.eml.geospatial.Point
setLongitude(BigDecimal) - Method in class org.gbif.api.model.registry.Organization
setLower(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
setLower(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
setLowestBiostratigraphicZone(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setMachineTagName(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setMachineTagNamespace(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setMachineTags(List<MachineTag>) - Method in class org.gbif.api.model.collections.Collection
setMachineTags(List<MachineTag>) - Method in class org.gbif.api.model.collections.Institution
setMachineTags(List<MachineTag>) - Method in class org.gbif.api.model.registry.Dataset
setMachineTags(List<MachineTag>) - Method in class org.gbif.api.model.registry.Endpoint
setMachineTags(List<MachineTag>) - Method in class org.gbif.api.model.registry.Installation
setMachineTags(List<MachineTag>) - Method in interface org.gbif.api.model.registry.MachineTaggable
setMachineTags(List<MachineTag>) - Method in class org.gbif.api.model.registry.Network
setMachineTags(List<MachineTag>) - Method in class org.gbif.api.model.registry.Node
setMachineTags(List<MachineTag>) - Method in class org.gbif.api.model.registry.Organization
setMachineTagValue(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setMailingAddress(Address) - Method in class org.gbif.api.model.collections.Collection
setMailingAddress(Address) - Method in interface org.gbif.api.model.collections.Contactable
setMailingAddress(Address) - Method in class org.gbif.api.model.collections.Institution
setMailingCity(String) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setMailingCountry(Country) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setMailingCountry(Country) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setMaintenanceDescription(String) - Method in class org.gbif.api.model.registry.Dataset
setMaintenanceUpdateFrequency(MaintenanceUpdateFrequency) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setMarine(Boolean) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setMassInGram(Integer) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setMasterSource(MasterSourceType) - Method in class org.gbif.api.model.collections.Collection
setMasterSource(MasterSourceType) - Method in interface org.gbif.api.model.collections.CollectionEntity
setMasterSource(MasterSourceType) - Method in class org.gbif.api.model.collections.Institution
setMasterSource(MasterSourceType) - Method in class org.gbif.api.model.collections.SourceableField.Source
setMasterSourceMetadata(MasterSourceMetadata) - Method in class org.gbif.api.model.collections.Collection
setMasterSourceMetadata(MasterSourceMetadata) - Method in interface org.gbif.api.model.collections.CollectionEntity
setMasterSourceMetadata(MasterSourceMetadata) - Method in class org.gbif.api.model.collections.Institution
setMasterSourceType(MasterSourceType) - Method in class org.gbif.api.model.collections.request.SearchRequest
setMatchCase(Boolean) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
setMatches(Set<CollectionsSearchResponse.Match>) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setMatchType(NameUsageMatch.MatchType) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setMatchType(Match.MatchType) - Method in class org.gbif.api.model.collections.lookup.Match
setMatchType(NameUsageMatch.MatchType) - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
setMaxLat(double) - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
setMaxLatitude(double) - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
setMaxLong(double) - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
setMaxLongitude(double) - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
setMedia(List<NameUsageMediaObject>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setMedia(List<MediaObject>) - Method in class org.gbif.api.model.occurrence.Occurrence
setMember(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setMergeTargetKey(UUID) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setMergeTargetKey(UUID) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setMessage(String) - Method in class org.gbif.api.model.common.messaging.Response
setMessage(String) - Method in class org.gbif.api.model.pipelines.PipelineStep
setMessage(String) - Method in class org.gbif.api.model.pipelines.RunPipelineResponse.Builder
setMessageKey(String) - Method in class org.gbif.api.model.common.messaging.Response
setMethod(String) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
setMethodSteps(List<String>) - Method in class org.gbif.api.model.registry.eml.SamplingDescription
setMetrics(Set<PipelineStep.MetricInfo>) - Method in class org.gbif.api.model.pipelines.PipelineStep
setMinLat(double) - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
setMinLatitude(double) - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
setMinLong(double) - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
setMinLongitude(double) - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
setModified(Date) - Method in class org.gbif.api.model.checklistbank.NameUsage
setModified(Date) - Method in class org.gbif.api.model.collections.Collection
setModified(Date) - Method in interface org.gbif.api.model.collections.CollectionEntity
setModified(Date) - Method in class org.gbif.api.model.collections.Contact
setModified(Date) - Method in class org.gbif.api.model.collections.Institution
setModified(Date) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setModified(Date) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setModified(Date) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setModified(Date) - Method in class org.gbif.api.model.occurrence.Download
setModified(Date) - Method in class org.gbif.api.model.occurrence.Occurrence
setModified(LocalDateTime) - Method in class org.gbif.api.model.pipelines.PipelineStep
setModified(Date) - Method in class org.gbif.api.model.registry.Comment
setModified(Date) - Method in class org.gbif.api.model.registry.Contact
setModified(Date) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setModified(Date) - Method in class org.gbif.api.model.registry.Endpoint
setModified(Date) - Method in class org.gbif.api.model.registry.Installation
setModified(Date) - Method in class org.gbif.api.model.registry.Metadata
setModified(Date) - Method in class org.gbif.api.model.registry.Network
setModified(Date) - Method in interface org.gbif.api.model.registry.NetworkEntity
setModified(Date) - Method in class org.gbif.api.model.registry.Node
setModified(Date) - Method in class org.gbif.api.model.registry.Organization
setModifiedBy(String) - Method in class org.gbif.api.model.collections.Collection
setModifiedBy(String) - Method in interface org.gbif.api.model.collections.CollectionEntity
setModifiedBy(String) - Method in class org.gbif.api.model.collections.Contact
setModifiedBy(String) - Method in class org.gbif.api.model.collections.Institution
setModifiedBy(String) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setModifiedBy(String) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setModifiedBy(String) - Method in class org.gbif.api.model.pipelines.PipelineStep
setModifiedBy(String) - Method in class org.gbif.api.model.registry.Comment
setModifiedBy(String) - Method in class org.gbif.api.model.registry.Contact
setModifiedBy(String) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setModifiedBy(String) - Method in class org.gbif.api.model.registry.Endpoint
setModifiedBy(String) - Method in class org.gbif.api.model.registry.Installation
setModifiedBy(String) - Method in class org.gbif.api.model.registry.Metadata
setModifiedBy(String) - Method in class org.gbif.api.model.registry.Network
setModifiedBy(String) - Method in interface org.gbif.api.model.registry.NetworkEntity
setModifiedBy(String) - Method in class org.gbif.api.model.registry.Node
setModifiedBy(String) - Method in class org.gbif.api.model.registry.Organization
setMonth(Integer) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setMonth(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setMultiSelectFacets(boolean) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
setName(String) - Method in class org.gbif.api.model.collections.Collection
setName(String) - Method in interface org.gbif.api.model.collections.CollectionEntity
setName(String) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setName(String) - Method in class org.gbif.api.model.collections.Institution
setName(String) - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
setName(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setName(String) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setName(String) - Method in class org.gbif.api.model.common.search.Facet.Count: Sets the name value of the category/count.
setName(String) - Method in class org.gbif.api.model.occurrence.GadmFeature
setName(String) - Method in class org.gbif.api.model.pipelines.PipelineStep.MetricInfo
setName(String) - Method in class org.gbif.api.model.registry.eml.Collection
setName(String) - Method in class org.gbif.api.model.registry.eml.DataDescription
setName(String) - Method in class org.gbif.api.model.registry.MachineTag
setName(String) - Method in class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
setName(String) - Method in class org.gbif.api.v2.RankedName
setNameForNewInstitution(String) - Method in class org.gbif.api.model.collections.merge.ConvertToCollectionParams
setNameForNewInstitutionForConvertedCollection(String) - Method in class org.gbif.api.model.collections.suggestions.InstitutionChangeSuggestion
setNameKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setNameKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setNameKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setNamespace(String) - Method in class org.gbif.api.model.registry.MachineTag
setNameType(NameType) - Method in class org.gbif.api.model.checklistbank.NameUsage
setNameType(NameType) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setNameUsagesCount(Integer) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setNetworkKeys(List<UUID>) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setNetworkKeys(List<UUID>) - Method in class org.gbif.api.model.registry.Dataset
setNetworkKeys(List<UUID>) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setNextSteps(List<WorkflowStep>) - Method in class org.gbif.api.model.pipelines.WorkflowStep
setNomenclaturalStatus(Set<NomenclaturalStatus>) - Method in class org.gbif.api.model.checklistbank.NameUsage
setNomenclaturalStatus(List<NomenclaturalStatus>) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setNomenclature(NameUsageMatch2.Nomenclature) - Method in class org.gbif.api.v2.NameUsageMatch2
setNomStatus(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setNote(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setNote(String) - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
setNotes(String) - Method in class org.gbif.api.model.collections.Collection
setNotes(String) - Method in class org.gbif.api.model.collections.Contact
setNotes(String) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setNotho(NamePart) - Method in class org.gbif.api.model.checklistbank.ParsedName
setNotificationAddresses(Set<String>) - Method in class org.gbif.api.model.occurrence.DownloadRequest
setNotificationAddressesAsString(String) - Method in class org.gbif.api.model.occurrence.DownloadRequest: Sets the notificationAddresses using a single String value that is split by ','.
setNotInCountries(List<String>) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setNotInInstitutions(List<UUID>) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setNubCoveragePct(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setNubKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setNubKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setNubKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setNubMatchingCount(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setNumberDatasets(Long) - Method in class org.gbif.api.model.occurrence.Download
setNumberDownloads(Long) - Method in class org.gbif.api.model.occurrence.DownloadStatistics
setNumberOrganizations(Long) - Method in class org.gbif.api.model.occurrence.Download
setNumberPublishingCountries(Long) - Method in class org.gbif.api.model.occurrence.Download
setNumberRecords(Long) - Method in class org.gbif.api.model.pipelines.PipelineStep
setNumberRecords(long) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
setNumberSpecimens(Integer) - Method in class org.gbif.api.model.collections.Collection
setNumberSpecimens(Integer) - Method in class org.gbif.api.model.collections.Institution
setNumberSpecimens(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setNumChildren(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setNumClass(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setNumConstituents(int) - Method in class org.gbif.api.model.registry.Dataset: Not persisted in the database table, but calculated on the fly.
setNumConstituents(int) - Method in class org.gbif.api.model.registry.Network
setNumDescendants(int) - Method in class org.gbif.api.model.checklistbank.NameUsage
setNumDescendants(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setNumDescendants(int) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setNumFamily(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setNumFound(int) - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion: Sets the number of documents found for this suggestion.
setNumGenus(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setNumOccurrences(long) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setNumOrder(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setNumPhylum(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setNumPublishedDatasets(int) - Method in class org.gbif.api.model.registry.Organization
setNumSpecies(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setNumSubgenus(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setNumSynonyms(int) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
setOccurrenceCount(Integer) - Method in class org.gbif.api.model.collections.Collection
setOccurrenceCount(Integer) - Method in class org.gbif.api.model.collections.Institution
setOccurrenceCount(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setOccurrenceId(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setOccurrenceId(long) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
setOccurrenceMappings(List<OccurrenceMapping>) - Method in class org.gbif.api.model.collections.Collection
setOccurrenceMappings(List<OccurrenceMapping>) - Method in class org.gbif.api.model.collections.Institution
setOccurrenceMappings(List<OccurrenceMapping>) - Method in interface org.gbif.api.model.collections.OccurrenceMappeable
setOccurrenceStatus(OccurrenceStatus) - Method in class org.gbif.api.model.occurrence.Occurrence
setOffset(long) - Method in class org.gbif.api.model.common.paging.PageableBase
setOpenAccess(boolean) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setOrder(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setOrder(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setOrder(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setOrder(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setOrder(String) - Method in interface org.gbif.api.model.common.LinneanClassification
setOrder(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setOrderKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setOrderKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setOrderKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setOrderKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setOrderKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
setOrderKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setOrganismQuantity(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setOrganismQuantityType(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setOrganization(String) - Method in interface org.gbif.api.model.registry.Address
setOrganization(String) - Method in class org.gbif.api.model.registry.Contact
setOrganization(String) - Method in class org.gbif.api.model.registry.Network: Alias for the network title
setOrganization(String) - Method in class org.gbif.api.model.registry.Node
setOrganization(String) - Method in class org.gbif.api.model.registry.Organization
setOrganizationKey(UUID) - Method in class org.gbif.api.model.collections.InstitutionImportParams
setOrganizationKey(UUID) - Method in class org.gbif.api.model.registry.Installation
setOrigin(Origin) - Method in class org.gbif.api.model.checklistbank.NameUsage
setOrigin(Origin) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setOtherCatalogNumbers(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setOtherCount(Map<String, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setOutdated(boolean) - Method in class org.gbif.api.model.collections.suggestions.Change
setOverridable(boolean) - Method in class org.gbif.api.model.collections.SourceableField.Source
setOverwritten(boolean) - Method in class org.gbif.api.model.collections.suggestions.Change
setOwnerInstitutionCode(String) - Method in class org.gbif.api.model.collections.lookup.LookupParams
setPage(Pageable) - Method in class org.gbif.api.model.registry.search.RequestSearchParams
setPagesCrawled(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setPagesFragmentedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setPagesFragmentedSuccessful(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setParameter(T) - Method in class org.gbif.api.model.common.messaging.Request
setParameters(Map<P, Set<String>>) - Method in class org.gbif.api.model.common.search.SearchRequest: Sets the list of parameters.
setParent(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setParent(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setParent(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setParentCode(String) - Method in class org.gbif.api.model.collections.OccurrenceMapping
setParentDatasetKey(UUID) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setParentIdentifier(String) - Method in class org.gbif.api.model.registry.eml.Collection
setParentKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setParentKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setParentKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setParsed(boolean) - Method in class org.gbif.api.model.checklistbank.ParsedName
setParsedPartially(boolean) - Method in class org.gbif.api.model.checklistbank.ParsedName
setParticipantSince(Integer) - Method in class org.gbif.api.model.registry.Node
setParticipantTitle(String) - Method in class org.gbif.api.model.registry.Node
setParticipationStatus(ParticipationStatus) - Method in class org.gbif.api.model.registry.Node
setPassword(String) - Method in class org.gbif.api.model.registry.Installation
setPassword(String) - Method in class org.gbif.api.model.registry.Organization
setPasswordHash(String) - Method in class org.gbif.api.model.common.GbifUser
setPasswordHash(String) - Method in class org.gbif.api.model.common.User: Deprecated.
setPathway(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setPeerReview(boolean) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setPeriod(String) - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
setPersonalCollection(boolean) - Method in class org.gbif.api.model.collections.Collection
setPersonalCollection(Boolean) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
setPhone(List<String>) - Method in class org.gbif.api.model.collections.Collection
setPhone(List<String>) - Method in interface org.gbif.api.model.collections.CollectionEntity
setPhone(List<String>) - Method in class org.gbif.api.model.collections.Contact
setPhone(List<String>) - Method in class org.gbif.api.model.collections.Institution
setPhone(List<String>) - Method in interface org.gbif.api.model.registry.Address
setPhone(List<String>) - Method in class org.gbif.api.model.registry.Contact
setPhone(List<String>) - Method in class org.gbif.api.model.registry.Network
setPhone(List<String>) - Method in class org.gbif.api.model.registry.Node
setPhone(List<String>) - Method in class org.gbif.api.model.registry.Organization
setPhylum(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setPhylum(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setPhylum(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setPhylum(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setPhylum(String) - Method in interface org.gbif.api.model.common.LinneanClassification
setPhylum(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setPhylumKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setPhylumKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setPhylumKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setPhylumKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setPhylumKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
setPhylumKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setPhysicalCity(String) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setPhysicalCountry(Country) - Method in class org.gbif.api.model.collections.duplicates.Duplicate
setPipelineExecutions(Set<PipelineExecution>) - Method in class org.gbif.api.model.pipelines.IngestionProcess
setPipelinesVersion(String) - Method in class org.gbif.api.model.pipelines.PipelineStep
setPipelinesVersion(String) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
setPlural(Boolean) - Method in class org.gbif.api.model.checklistbank.VernacularName
setPoints(List<Point>) - Method in class org.gbif.api.model.registry.eml.geospatial.Polygon
setPosition(List<String>) - Method in class org.gbif.api.model.collections.Contact
setPosition(List<String>) - Method in class org.gbif.api.model.registry.Contact
setPostalCode(String) - Method in class org.gbif.api.model.collections.Address
setPostalCode(String) - Method in class org.gbif.api.model.collections.Contact
setPostalCode(String) - Method in interface org.gbif.api.model.registry.Address
setPostalCode(String) - Method in class org.gbif.api.model.registry.Contact
setPostalCode(String) - Method in class org.gbif.api.model.registry.Network
setPostalCode(String) - Method in class org.gbif.api.model.registry.Node
setPostalCode(String) - Method in class org.gbif.api.model.registry.Organization
setPredicate(Predicate) - Method in class org.gbif.api.model.occurrence.PredicateDownloadRequest
setPredicate(Predicate) - Method in class org.gbif.api.model.occurrence.search.OccurrencePredicateSearchRequest
setPreferred(Boolean) - Method in class org.gbif.api.model.checklistbank.VernacularName
setPrefix(String) - Method in class org.gbif.api.model.common.DOI
setPreparations(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setPreservationTypes(List<PreservationType>) - Method in class org.gbif.api.model.collections.Collection
setPreservationTypes(List<PreservationType>) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest
setPrevious(Object) - Method in class org.gbif.api.model.collections.suggestions.Change
setPrimary(boolean) - Method in class org.gbif.api.model.collections.Contact
setPrimary(boolean) - Method in class org.gbif.api.model.registry.Contact
setProcessingErrorType(ProcessingErrorType) - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
setProcessStateChecklist(ProcessState) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setProcessStateOccurrence(ProcessState) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setProcessStateSample(ProcessState) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setProgrammeAcronym(String) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setProject(Project) - Method in class org.gbif.api.model.registry.Dataset
setProjectId(String) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setProjectIdentifier(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setProParteKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage: Sets the pro parte usage key.
setProposed(Date) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setProposed(Date) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setProposedBy(String) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setProposedBy(String) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setProposerEmail(String) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setProposerEmail(String) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setProtocol(EndpointType) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setProvince(String) - Method in class org.gbif.api.model.collections.Address
setProvince(String) - Method in class org.gbif.api.model.collections.Contact
setProvince(String) - Method in interface org.gbif.api.model.registry.Address
setProvince(String) - Method in class org.gbif.api.model.registry.Contact
setProvince(String) - Method in class org.gbif.api.model.registry.Network
setProvince(String) - Method in class org.gbif.api.model.registry.Node
setProvince(String) - Method in class org.gbif.api.model.registry.Organization
setPubDate(Date) - Method in class org.gbif.api.model.registry.Dataset
setPublished(Date) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setPublishedByGbifRegion(String) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setPublishedIn(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setPublishedIn(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setPublisher(String) - Method in class org.gbif.api.model.common.MediaObject
setPublisher(String) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setPublisherTitle(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setPublishingCountry(Country) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setPublishingCountry(Country) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setPublishingCountryCode(String) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
setPublishingOrganizationKey(UUID) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setPublishingOrganizationKey(UUID) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setPublishingOrganizationTitle(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setPublishingOrgKey(UUID) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setPurpose(String) - Method in class org.gbif.api.model.registry.Dataset
setQ(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setQ(String) - Method in class org.gbif.api.model.common.search.SearchRequest
setQFields(Set<SearchRequest.QueryField>) - Method in class org.gbif.api.model.common.search.SearchRequest
setQualityControl(String) - Method in class org.gbif.api.model.registry.eml.SamplingDescription
setQuotedBy(Character) - Method in class org.gbif.utils.file.csv.CSVReaderFactory.CSVMetadata
setQuotedBy(Character) - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
setRank(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsage
setRank(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setRank(Rank) - Method in class org.gbif.api.model.checklistbank.ParsedName
setRank(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setRank(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setRank(InterpretedEnum<String, Rank>) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
setRank(Rank) - Method in class org.gbif.api.v2.RankedName
setRawOccurrencesPersistedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setRawOccurrencesPersistedNew(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setRawOccurrencesPersistedUnchanged(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setRawOccurrencesPersistedUpdated(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setReason(String) - Method in enum org.gbif.api.model.common.messaging.Response.StatusCode
setReasons(Set<Match.Reason>) - Method in class org.gbif.api.model.collections.lookup.Match
setRecordCount(Integer) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setRecordedBy(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setRecordedBy(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setRecordedByIds(List<AgentIdentifier>) - Method in class org.gbif.api.model.occurrence.Occurrence
setRecordId(long) - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
setReferenceList(List<Reference>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setReferences(URI) - Method in class org.gbif.api.model.checklistbank.NameUsage
setReferences(URI) - Method in class org.gbif.api.model.common.MediaObject
setReferences(URI) - Method in class org.gbif.api.model.occurrence.Occurrence
setRelatedOccurrenceId(long) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
setRelatedResponses(List<Response<R>>) - Method in class org.gbif.api.model.common.messaging.ResponseChain
setRelations(List<OccurrenceRelation>) - Method in class org.gbif.api.model.occurrence.Occurrence
setRelativeOrganismQuantity(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setRelevance(Set<LiteratureRelevance>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setRemarks(String) - Method in class org.gbif.api.model.checklistbank.Distribution
setRemarks(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setRemarks(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setRemarks(String) - Method in class org.gbif.api.model.checklistbank.Reference
setRemarks(String) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
setRemarks(String) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
setRemarks(String) - Method in class org.gbif.api.model.pipelines.PipelineExecution
setReplacedBy(UUID) - Method in class org.gbif.api.model.collections.Collection
setReplacedBy(UUID) - Method in interface org.gbif.api.model.collections.CollectionEntity
setReplacedBy(UUID) - Method in class org.gbif.api.model.collections.Institution
setReplacedBy(UUID) - Method in class org.gbif.api.model.collections.request.SearchRequest
setReplacementEntityKey(UUID) - Method in class org.gbif.api.model.collections.merge.MergeParams
setRequest(DownloadRequest) - Method in class org.gbif.api.model.occurrence.Download
setRerunReason(String) - Method in class org.gbif.api.model.pipelines.PipelineExecution
setRerunReason(String) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
setResponseStatus(RunPipelineResponse.ResponseStatus) - Method in class org.gbif.api.model.pipelines.RunPipelineResponse.Builder
setResult(MetasyncResult) - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
setResults(List<T>) - Method in class org.gbif.api.model.common.paging.PagingResponse: Sets the list of results for the response.
setRights(String) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setRightsHolder(String) - Method in class org.gbif.api.model.common.MediaObject
setRoles(Set<UserRole>) - Method in class org.gbif.api.model.common.AbstractGbifUser
setRoles(Set<UserRole>) - Method in class org.gbif.api.model.common.User: Deprecated.
setRoles(Set<ContactType>) - Method in class org.gbif.api.model.registry.CitationContact
setRootException(Throwable) - Method in class org.gbif.api.model.common.messaging.Response: Sets the root exception when is error response.
setRunner(StepRunner) - Method in class org.gbif.api.model.pipelines.PipelineStep
setSameCity(Boolean) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setSameCode(Boolean) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setSameCountry(Boolean) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setSameFuzzyName(Boolean) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setSameInstitution(Boolean) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setSameName(Boolean) - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
setSampleSizeUnit(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setSampleSizeValue(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
setSampling(String) - Method in class org.gbif.api.model.registry.eml.SamplingDescription
setSamplingDescription(SamplingDescription) - Method in class org.gbif.api.model.registry.Dataset
setSamplingProtocol(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setScientificName(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setScientificName(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setScientificName(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setScientificName(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setScientificName(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setScientificName(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
setScientificName(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setScientificName(String) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
setSelfLink(URI) - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
setSendNotification(boolean) - Method in class org.gbif.api.model.occurrence.DownloadRequest: This parameter determines if the requested download must be notified to the created once it's ready.
setSensu(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setSettings(Map<String, String>) - Method in class org.gbif.api.model.common.AbstractGbifUser: Sets the settings object, setting an empty map if null is provided.
setSettings(Map<String, String>) - Method in class org.gbif.api.model.common.User: Deprecated.

Sets the settings object, setting an empty map if null is provided.
setSex(Sex) - Method in class org.gbif.api.model.checklistbank.VernacularName
setSex(Sex) - Method in class org.gbif.api.model.occurrence.Occurrence
setShuffle(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
setSize(long) - Method in class org.gbif.api.model.occurrence.Download
setSizeInMillimeter(Integer) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setSnippet(String) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse.Match
setSortBy(CollectionsSortField) - Method in class org.gbif.api.model.collections.request.SearchRequest
setSortOrder(SortOrder) - Method in class org.gbif.api.model.collections.request.SearchRequest
setSource(String) - Method in class org.gbif.api.model.checklistbank.Description
setSource(String) - Method in class org.gbif.api.model.checklistbank.Distribution
setSource(String) - Method in interface org.gbif.api.model.checklistbank.NameUsageExtension
setSource(String) - Method in class org.gbif.api.model.checklistbank.Reference
setSource(String) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setSource(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
setSource(String) - Method in class org.gbif.api.model.checklistbank.VernacularName
setSource(Source) - Method in class org.gbif.api.model.collections.MasterSourceMetadata
setSource(String) - Method in class org.gbif.api.model.common.MediaObject
setSource(String) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setSource(String) - Method in class org.gbif.api.model.occurrence.Download
setSource(String) - Method in class org.gbif.api.v2.NameUsageMatch2.Nomenclature
setSourceableParts(List<String>) - Method in class org.gbif.api.model.collections.SourceableField.Source
setSourceId(String) - Method in class org.gbif.api.model.collections.MasterSourceMetadata
setSources(List<SourceableField.Source>) - Method in class org.gbif.api.model.collections.SourceableField
setSourceTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.Description
setSourceTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.Distribution
setSourceTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setSourceTaxonKey(Integer) - Method in interface org.gbif.api.model.checklistbank.NameUsageExtension
setSourceTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMediaObject
setSourceTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.Reference
setSourceTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setSourceTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
setSourceTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.VernacularName
setSpecies(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setSpecies(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setSpecies(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setSpecies(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setSpecies(String) - Method in interface org.gbif.api.model.common.LinneanClassification
setSpecies(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setSpeciesKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setSpeciesKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setSpeciesKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setSpeciesKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setSpeciesKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
setSpeciesKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setSpeciesProfiles(List<SpeciesProfile>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setSpecificEpithet(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setSpecificEpithet(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setSpecimenPreservationMethod(PreservationMethodType) - Method in class org.gbif.api.model.registry.eml.Collection
setSpellCheck(boolean) - Method in class org.gbif.api.model.common.search.SearchRequest
setSpellCheckCount(int) - Method in class org.gbif.api.model.common.search.SearchRequest
setSpellCheckResponse(SpellCheckResponse) - Method in class org.gbif.api.model.common.search.SearchResponse: Sets the spellcheck response.
setStart(Date) - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
setStartDayOfYear(Integer) - Method in class org.gbif.api.model.checklistbank.Distribution
setStartDayOfYear(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setStarted(LocalDateTime) - Method in class org.gbif.api.model.pipelines.PipelineStep
setStartedCrawling(Date) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setState(PipelineStep.Status) - Method in class org.gbif.api.model.pipelines.PipelineStep
setStateProvince(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setStatus(DistributionStatus) - Method in class org.gbif.api.model.checklistbank.Distribution
setStatus(TaxonomicStatus) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setStatus(TaxonomicStatus) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setStatus(Match.Status) - Method in class org.gbif.api.model.collections.lookup.Match
setStatus(Status) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setStatus(Status) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setStatus(Response.Status) - Method in class org.gbif.api.model.common.messaging.Response
setStatus(Download.Status) - Method in class org.gbif.api.model.occurrence.Download
setStatus(TaxonomicStatus) - Method in class org.gbif.api.v2.NameUsageMatch2.Diagnostics
setStatusCode(Integer) - Method in class org.gbif.api.model.common.messaging.Response
setStepFinished(LocalDateTime) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
setSteps(Set<PipelineStep>) - Method in class org.gbif.api.model.pipelines.PipelineExecution
setSteps(Set<StepType>) - Method in class org.gbif.api.model.pipelines.RunPipelineResponse.Builder
setStepsFailed(Set<StepType>) - Method in class org.gbif.api.model.pipelines.RunPipelineResponse.Builder
setStepStarted(LocalDateTime) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
setStepState(String) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
setStepsToRun(Set<StepType>) - Method in class org.gbif.api.model.pipelines.PipelineExecution
setStepType(StepType) - Method in class org.gbif.api.model.pipelines.WorkflowStep
setStepType(String) - Method in class org.gbif.api.model.pipelines.ws.SearchResult
setStrain(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setStudyAreaDescription(String) - Method in class org.gbif.api.model.registry.eml.Project
setStudyExtent(String) - Method in class org.gbif.api.model.registry.eml.SamplingDescription
setSubgenus(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setSubgenus(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setSubgenus(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setSubgenus(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setSubgenus(String) - Method in interface org.gbif.api.model.common.LinneanClassification
setSubgenus(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setSubgenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
setSubgenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setSubgenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setSubgenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
setSubgenusKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
setSubgenusKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setSubtype(DatasetSubtype) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setSubtype(DatasetSubtype) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setSubtype(DatasetSubtype) - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
setSuffix(String) - Method in class org.gbif.api.model.common.DOI
setSuggested(Object) - Method in class org.gbif.api.model.collections.suggestions.Change
setSuggestedEntity(T) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setSuggestedEntity(T) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setSuggestions(Map<String, SpellCheckResponse.Suggestion>) - Method in class org.gbif.api.model.common.search.SpellCheckResponse: Sets the suggestion map.
setSyncDate(Date) - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
setSynonym(boolean) - Method in class org.gbif.api.v2.NameUsageMatch2
setSynonyms(List<NameUsage>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setSynonymsCount(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setSystemSettings(Map<String, String>) - Method in class org.gbif.api.model.common.AbstractGbifUser: Sets the settings object, setting an empty map if null is provided.
setTags(List<Tag>) - Method in class org.gbif.api.model.collections.Collection
setTags(List<Tag>) - Method in class org.gbif.api.model.collections.Institution
setTags(List<String>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setTags(List<Tag>) - Method in class org.gbif.api.model.registry.Dataset
setTags(List<Tag>) - Method in class org.gbif.api.model.registry.Installation
setTags(List<Tag>) - Method in class org.gbif.api.model.registry.Network
setTags(List<Tag>) - Method in class org.gbif.api.model.registry.Node
setTags(List<Tag>) - Method in class org.gbif.api.model.registry.Organization
setTags(List<Tag>) - Method in interface org.gbif.api.model.registry.Taggable
setTaxonID(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setTaxonID(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.Description
setTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.Distribution
setTaxonKey(Integer) - Method in interface org.gbif.api.model.checklistbank.NameUsageExtension
setTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMediaObject
setTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.Reference
setTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
setTaxonKey(Integer) - Method in class org.gbif.api.model.checklistbank.VernacularName
setTaxonKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setTaxonomicCoverage(String) - Method in class org.gbif.api.model.collections.Collection
setTaxonomicCoverages(List<TaxonomicCoverages>) - Method in class org.gbif.api.model.registry.Dataset
setTaxonomicDescription(String) - Method in class org.gbif.api.model.collections.Institution
setTaxonomicExpertise(List<String>) - Method in class org.gbif.api.model.collections.Contact
setTaxonomicStatus(TaxonomicStatus) - Method in class org.gbif.api.model.checklistbank.NameUsage
setTaxonomicStatus(TaxonomicStatus) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setTaxonomicStatus(TaxonomicStatus) - Method in class org.gbif.api.model.occurrence.Occurrence
setTaxonRank(Rank) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
setTaxonRank(Rank) - Method in class org.gbif.api.model.occurrence.Occurrence
setTemporal(String) - Method in class org.gbif.api.model.checklistbank.Distribution
setTemporalCoverages(List<TemporalCoverage>) - Method in class org.gbif.api.model.registry.Dataset
setTerrestrial(Boolean) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
setText(String) - Method in class org.gbif.api.model.registry.Citation
setThesaurus(String) - Method in class org.gbif.api.model.registry.eml.KeywordCollection
setThreatStatus(ThreatStatus) - Method in class org.gbif.api.model.checklistbank.Distribution
setThreatStatuses(List<ThreatStatus>) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setTimeout(long) - Method in class org.gbif.nameparser.NameParserGbifV1
setTitle(String) - Method in class org.gbif.api.model.checklistbank.Reference: Deprecated.
setTitle(String) - Method in class org.gbif.api.model.common.Identifier
setTitle(String) - Method in class org.gbif.api.model.common.MediaObject
setTitle(String) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setTitle(String) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setTitle(String) - Method in class org.gbif.api.model.registry.eml.Project
setTitle(String) - Method in class org.gbif.api.model.registry.Installation
setTitle(String) - Method in class org.gbif.api.model.registry.Network
setTitle(String) - Method in interface org.gbif.api.model.registry.NetworkEntity
setTitle(String) - Method in class org.gbif.api.model.registry.Node
setTitle(String) - Method in class org.gbif.api.model.registry.Organization
setTitle(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setTitle(String) - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
setTitle(String) - Method in class org.gbif.api.model.registry.search.KeyTitleResult
setTo(Temporal) - Method in class org.gbif.api.util.IsoDateInterval
setTo(String) - Method in class org.gbif.api.util.IsoDateInterval
setTopics(Set<LiteratureTopic>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setTotalRecords(long) - Method in class org.gbif.api.model.occurrence.Download
setTotalRecords(Long) - Method in class org.gbif.api.model.occurrence.DownloadStatistics
setType(String) - Method in class org.gbif.api.model.checklistbank.Description
setType(NameType) - Method in class org.gbif.api.model.checklistbank.ParsedName
setType(String) - Method in class org.gbif.api.model.checklistbank.Reference
setType(InstitutionType) - Method in class org.gbif.api.model.collections.Institution
setType(InstitutionType) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest
setType(String) - Method in class org.gbif.api.model.collections.search.CollectionsSearchResponse
setType(Type) - Method in class org.gbif.api.model.collections.suggestions.BaseChangeSuggestion
setType(Type) - Method in interface org.gbif.api.model.collections.suggestions.ChangeSuggestion
setType(IdType) - Method in class org.gbif.api.model.collections.UserId
setType(IdentifierType) - Method in class org.gbif.api.model.common.Identifier
setType(MediaType) - Method in class org.gbif.api.model.common.MediaObject
setType(Class<T>) - Method in class org.gbif.api.model.metrics.cube.Dimension
setType(AgentIdentifierType) - Method in class org.gbif.api.model.occurrence.AgentIdentifier
setType(DownloadType) - Method in class org.gbif.api.model.occurrence.DownloadRequest: Download type: Occurrence or Event.
setType(String) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
setType(String) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
setType(StepType) - Method in class org.gbif.api.model.pipelines.PipelineStep
setType(ContactType) - Method in class org.gbif.api.model.registry.Contact
setType(DatasetType) - Method in class org.gbif.api.model.registry.Dataset: Persisted in the database table.
setType(CuratorialUnitType) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
setType(VerbatimTimePeriodType) - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
setType(EndpointType) - Method in class org.gbif.api.model.registry.Endpoint
setType(IdentifierType) - Method in class org.gbif.api.model.registry.Identifier
setType(InstallationType) - Method in class org.gbif.api.model.registry.Installation
setType(MetadataType) - Method in class org.gbif.api.model.registry.Metadata
setType(NodeType) - Method in class org.gbif.api.model.registry.Node
setType(DatasetType) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
setType(DatasetType) - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
setTypeDesignatedBy(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
setTypeDesignationType(TypeDesignationType) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
setTypeSpecimenCount(Integer) - Method in class org.gbif.api.model.collections.Collection
setTypeSpecimenCount(Integer) - Method in class org.gbif.api.model.collections.Institution
setTypeSpecimenCount(String) - Method in class org.gbif.api.model.collections.request.SearchRequest
setTypeSpecimens(List<TypeSpecimen>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setTypeStatus(TypeStatus) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setTypeStatus(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setTypeVerbatim(String) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
setTypifiedName(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setUnit(String) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
setUpper(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
setUpper(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
setUrl(URI) - Method in class org.gbif.api.model.registry.eml.DataDescription
setUrl(URI) - Method in class org.gbif.api.model.registry.Endpoint
setUsage(RankedName) - Method in class org.gbif.api.v2.NameUsageMatch2
setUsageKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
setUsagesCount(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
setUserId(Set<String>) - Method in class org.gbif.api.model.registry.CitationContact
setUserId(List<String>) - Method in class org.gbif.api.model.registry.Contact
setUserIds(List<UserId>) - Method in class org.gbif.api.model.collections.Contact
setUserName(String) - Method in class org.gbif.api.model.common.AbstractGbifUser
setUserName(String) - Method in class org.gbif.api.model.common.User: Deprecated.
setValue(String) - Method in class org.gbif.api.model.occurrence.AgentIdentifier
setValue(String) - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
setValue(String) - Method in class org.gbif.api.model.pipelines.PipelineStep.MetricInfo
setValue(String) - Method in class org.gbif.api.model.registry.MachineTag
setValue(String) - Method in class org.gbif.api.model.registry.Tag
setVerbatim(V) - Method in class org.gbif.api.model.common.InterpretedField: Deprecated.
setVerbatimEventDate(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setVerbatimExtensions(Set<Extension>) - Method in class org.gbif.api.model.occurrence.DownloadRequest
setVerbatimField(Term, String) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence: For setting a specific field without having to replace the entire verbatimFields Map.
setVerbatimFields(Map<Term, String>) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
setVerbatimLabel(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setVerbatimLatitude(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setVerbatimLongitude(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen: Deprecated.
setVerbatimOccurrencesPersistedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setVerbatimOccurrencesPersistedSuccessful(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
setVerbatimScientificName(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setVerbose(boolean) - Method in class org.gbif.api.model.collections.lookup.LookupParams
setVernacularName(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
setVernacularName(String) - Method in class org.gbif.api.model.checklistbank.VernacularName
setVernacularNames(List<VernacularName>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
setVernacularNames(List<VernacularName>) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
setVersion(String) - Method in class org.gbif.api.model.registry.Dataset
setWaterBody(String) - Method in class org.gbif.api.model.occurrence.Occurrence
setWebsites(List<String>) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setYear(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
setYear(Integer) - Method in class org.gbif.api.model.literature.search.LiteratureSearchResult
setYear(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
setYearMonth(LocalDate) - Method in class org.gbif.api.model.occurrence.DownloadStatistics
Sex - Enum in org.gbif.api.vocabulary: Vocabulary for the sex of an organism.
SexParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/sex.txt.
SIMPLE_ISO_DATE_STR_PATTERN - Static variable in class org.gbif.api.util.IsoDateParsingUtils
SIMPLE_ISO_PATTERN - Static variable in class org.gbif.api.util.IsoDateParsingUtils
SIMPLE_ISO_YEAR_MONTH_PATTERN - Static variable in class org.gbif.api.util.SearchTypeValidator
SimplePredicate<S extends SearchParameter> - Class in org.gbif.api.model.predicate
SingleDate - Class in org.gbif.api.model.registry.eml.temporal: A single instance in time.
SingleDate() - Constructor for class org.gbif.api.model.registry.eml.temporal.SingleDate
size() - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateTokens: Size does NOT include discarded token(s).
size() - Method in class org.gbif.utils.collection.CompactHashSet: Returns the number of elements in this set (its cardinality).
sort(File, File, String, int, String, Character, String, int) - Method in class org.gbif.utils.file.FileUtils: Sorts the input file into the output file using the supplied delimited line parameters.
sort(List<File>, File, String, int, String, Character, String, int) - Method in class org.gbif.utils.file.FileUtils: Sorts the input file into the output file using the supplied delimited line parameters.
sort(File, File, String, int, String, Character, String, int, Comparator<String>, boolean) - Method in class org.gbif.utils.file.FileUtils: Sorts the input file into the output file using the supplied delimited line parameters.
sort(List<File>, File, String, int, String, Character, String, int, Comparator<String>, boolean) - Method in class org.gbif.utils.file.FileUtils: Sorts the input file into the output file using the supplied delimited line parameters.
sortBy(CollectionsSortField) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
sortBy(CollectionsSortField) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
sortByValue(Map<K, V>) - Static method in class org.gbif.utils.collection.MapUtils: This orders a Map by its values and returns a new LinkedHashMap which maintains that order.
sortByValue(Map<K, V>, Comparator<V>) - Static method in class org.gbif.utils.collection.MapUtils: Order a Map by its values using the given value comparator and return a new LinkedHashMap which maintains that order.
sortInJava(File, File, String, Comparator<String>, int) - Method in class org.gbif.utils.file.FileUtils: Sorts the input file into the output file using the supplied lineComparator.
sortInJava(List<File>, File, String, Comparator<String>, int) - Method in class org.gbif.utils.file.FileUtils: Sorts the input file into the output file using the supplied lineComparator.
sortOrder(SortOrder) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
sortOrder(SortOrder) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
SortOrder - Enum in org.gbif.api.vocabulary
Source() - Constructor for class org.gbif.api.model.collections.SourceableField.Source
Source - Enum in org.gbif.api.vocabulary.collections: Sources for GRSciColl.
Sourceable - Annotation Type in org.gbif.api.model.collections: Annotation to indicate that a field can be populated from external sources.
SourceableField - Class in org.gbif.api.model.collections: Holds the info about the GRSciColl fields whose master source is outside GRSciColl.
SourceableField() - Constructor for class org.gbif.api.model.collections.SourceableField
SourceableField.Source - Class in org.gbif.api.model.collections
Sourceables - Annotation Type in org.gbif.api.model.collections: Container annotation for multiple Sourceable annotations.
SpeciesProfile - Class in org.gbif.api.model.checklistbank: SpeciesProfile Model Object represents a species profile which describes basic species characteristics.
SpeciesProfile() - Constructor for class org.gbif.api.model.checklistbank.SpeciesProfile
SpeciesProfileService - Interface in org.gbif.api.service.checklistbank: Service interface for SpeciesProfile Interface methods.
specimenTypeStatusList() - Static method in enum org.gbif.api.vocabulary.TypeStatus
SpellCheckResponse - Class in org.gbif.api.model.common.search: Contains the response information of a spell check request.
SpellCheckResponse() - Constructor for class org.gbif.api.model.common.search.SpellCheckResponse
SpellCheckResponse.Suggestion - Class in org.gbif.api.model.common.search: Information about a suggestion made for possible correct spelled version of a search term.
split(File, File, String, long) - Static method in class org.gbif.utils.file.FileSplitter: Splits a file "pumaConcolor.txt" into the target directory using the suffix ("part") like so: - pumaConcolor_part_0.txt - pumaConcolor_part_1.txt - pumaConcolor_part_2.txt Returns the files parts
split(File, int, String) - Method in class org.gbif.utils.file.FileUtils: Splits the supplied file into files of set line size and with a suffix.
splitISODateRange(String) - Static method in class org.gbif.common.parsers.utils.DelimiterUtils: Handle day/month ranges Examples: 1991-1/3 : 1991-1, 1991-3 1991-1-2/5 : 1991-1-1, 1991-1-5
splitPeriod(String) - Static method in class org.gbif.common.parsers.utils.DelimiterUtils: Attempt to split the rawPeriod into raw periods by delimiter '/' symbol, the symbol must be the only one in the rawPeriod
startedCrawling(Date) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
startNewUtf8File(File) - Static method in class org.gbif.utils.file.FileUtils
startNewUtf8XmlFile(File) - Static method in class org.gbif.utils.file.FileUtils
Status - Enum in org.gbif.api.model.collections.suggestions
status(Response.Status) - Method in class org.gbif.api.model.common.messaging.Response.Builder
statusCode(Integer) - Method in class org.gbif.api.model.common.messaging.Response.Builder
statusReason() - Method in class org.gbif.api.model.common.messaging.Response
StepRunner - Enum in org.gbif.api.model.pipelines: General runners, STANDALONE - run an app using local resources, DISTRIBUTED - run an app using YARN cluster.
STEPS_BY_FINISHED_ASC - Static variable in class org.gbif.api.model.pipelines.PipelineStep: Comparator that sorts pipeline steps by start date and then by finished date in ascending order.
STEPS_BY_TYPE_ASC - Static variable in class org.gbif.api.model.pipelines.PipelineStep
STEPS_REQUIRED_MESSAGE - Static variable in interface org.gbif.api.service.pipelines.PipelinesHistoryService
StepType - Enum in org.gbif.api.model.pipelines: Enum to represent the pipelines step names.
stop(ExecutorService) - Static method in class org.gbif.utils.concurrent.ExecutorUtils: Shuts down an executor and waits up to 1 hour for the already submitted jobs to finish.
stop(ExecutorService, int, TimeUnit) - Static method in class org.gbif.utils.concurrent.ExecutorUtils: Shuts down an executor and waits for the job to finish until the given timeout is reached before forcing an immediate shutdown.
streamToList(InputStream) - Static method in class org.gbif.utils.file.FileUtils: Takes a utf8 encoded input stream and reads in every line/row into a list.
streamToList(InputStream, List<String>) - Static method in class org.gbif.utils.file.FileUtils: Reads a file and returns a list of all lines which are no comments (starting with #) and trims whitespace.
streamToList(InputStream, String) - Static method in class org.gbif.utils.file.FileUtils
streamToMap(InputStream) - Static method in class org.gbif.utils.file.FileUtils: Reads a utf8 encoded inut stream, splits
streamToMap(InputStream, int, int, boolean) - Static method in class org.gbif.utils.file.FileUtils
streamToMap(InputStream, Map<String, String>) - Static method in class org.gbif.utils.file.FileUtils: Read a hashmap from a tab delimited utf8 input stream using the row number as an integer value and the entire row as the value.
streamToMap(InputStream, Map<String, String>, int, int, boolean) - Static method in class org.gbif.utils.file.FileUtils: Read a hashmap from a tab delimited utf8 file, ignoring commented rows starting with #.
streamToSet(InputStream) - Static method in class org.gbif.utils.file.FileUtils
streamToSet(InputStream, Set<String>) - Static method in class org.gbif.utils.file.FileUtils: Reads a file and returns a unique set of all lines which are no comments (starting with #) and trims whitespace.
StringComparator - Class in org.gbif.utils.text: A comparator based around Javas String.compareTo().
StringComparator() - Constructor for class org.gbif.utils.text.StringComparator
StringLengthComparator - Class in org.gbif.utils.text
StringLengthComparator() - Constructor for class org.gbif.utils.text.StringLengthComparator
StringUtils - Class in org.gbif.utils.text: Utils class adding specific string methods to existing guava Strings and commons StringUtils.
stripOffsetOrZone(TemporalAccessor, boolean) - Static method in class org.gbif.api.util.IsoDateParsingUtils: Remove the offset, either ignoring it or using it to adjust the time.
stripOffsetOrZone(TemporalAccessor, boolean) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Removes any time zone, optionally adjusting the time using the zone offset first.
stripOffsetOrZoneExceptUTC(TemporalAccessor, boolean) - Static method in class org.gbif.api.util.IsoDateParsingUtils: Remove the offset, either ignoring it or using it to adjust the time, unless the offset is 0 (UTC).
subsetProperties(Properties, String) - Static method in class org.gbif.utils.file.properties.PropertiesUtil: Returns a new Properties object that contains only the elements where the key starts by the provided prefix.
success(ParseResult.CONFIDENCE, T) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
success(ParseResult.CONFIDENCE, T, OccurrenceIssue) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
success(ParseResult.CONFIDENCE, T, OccurrenceIssue...) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
success(ParseResult.CONFIDENCE, T, Collection<OccurrenceIssue>) - Static method in class org.gbif.common.parsers.core.OccurrenceParseResult
success(ParseResult.CONFIDENCE, T1) - Static method in class org.gbif.common.parsers.core.ParseResult
suggest(String) - Method in interface org.gbif.api.service.collections.CollectionService: Provides a simple suggest service.
suggest(String) - Method in interface org.gbif.api.service.collections.InstitutionService: Provides a simple suggest service.
suggest(R) - Method in interface org.gbif.api.service.common.SuggestService: Issues a SearchRequest for a suggest and retrieves the list of matches.
suggest(String) - Method in interface org.gbif.api.service.registry.InstallationService: Provides a simple suggest service.
suggest(String) - Method in interface org.gbif.api.service.registry.NetworkService: Provides a simple suggest service.
suggest(String) - Method in interface org.gbif.api.service.registry.NodeService: Provides a simple suggest service.
suggest(String) - Method in interface org.gbif.api.service.registry.OrganizationService: Provides a simple suggest service.
suggestCatalogNumbers(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches catalog numbers which start with the input prefix.
suggestCollectionCodes(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches collection codes which start with the input prefix.
suggestDatasetName(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches dataset names which start with the input prefix.
suggestEventId(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches DwC eventIds which start with the input prefix.
suggestIdentifiedBy(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches collector names (dwc:identifiedBy) which start with the input prefix.
suggestInstitutionCodes(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches institution codes which start with the input prefix.
Suggestion() - Constructor for class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
suggestLocalities(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches DwC localities which start with the input prefix.
suggestOccurrenceIds(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches DwC occurrenceIds which start with the input prefix.
suggestOrganismIds(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches DwC organismsIds which start with the input prefix.
suggestOtherCatalogNumbers(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches other catalog numbers which start with the input prefix.
suggestParentEventId(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches DwC parentEventIds which start with the input prefix.
suggestRecordedBy(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches collector names (dwc:recordedBy) which start with the input prefix.
suggestRecordNumbers(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches record numbers which start with the input prefix.
suggestSamplingProtocol(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches DwC sampling protocols which start with the input prefix.
SuggestService<T,P extends Enum<?> & SearchParameter,R extends SearchRequest> - Interface in org.gbif.api.service.common: Generic search interface for a suggest/autocomplete service.
suggestStateProvinces(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches DwC state/provinces which start with the input prefix.
suggestWaterBodies(String, Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceSearchService: Searches DwC water bodies which start with the input prefix.
synonymUrl(String) - Static method in class org.gbif.utils.rs.RsGbifOrg

T

TAB_DELIMITED - Static variable in class org.gbif.utils.file.FileUtils
TableOfContents - Class in org.gbif.api.model.checklistbank: A simple class to represent a table of contents for multiple languages.
TableOfContents() - Constructor for class org.gbif.api.model.checklistbank.TableOfContents
TabularDataFileReader<T> - Interface in org.gbif.utils.file.tabular: Interface defining a reader for tabular data file (e.g.
TabularFileMetadata - Class in org.gbif.utils.file.tabular: Data about a tabular data file.
TabularFileMetadata() - Constructor for class org.gbif.utils.file.tabular.TabularFileMetadata
TabularFileMetadataExtractor - Class in org.gbif.utils.file.tabular: Utility class to extract metadata TabularFileMetadata from a tabular file.
TabularFileNormalizer - Class in org.gbif.utils.file.tabular: Utility class to rewrite a tabular file (e.g.
TabularFileNormalizer() - Constructor for class org.gbif.utils.file.tabular.TabularFileNormalizer
TabularFiles - Class in org.gbif.utils.file.tabular: Static utility methods related to TabularDataFileReader instances.
TabularFiles() - Constructor for class org.gbif.utils.file.tabular.TabularFiles
Tag - Class in org.gbif.api.model.registry
Tag() - Constructor for class org.gbif.api.model.registry.Tag
Tag(String) - Constructor for class org.gbif.api.model.registry.Tag
Tag(String, String) - Constructor for class org.gbif.api.model.registry.Tag
Taggable - Interface in org.gbif.api.model.registry: Generic tag interface for entities.
TagName - Enum in org.gbif.api.vocabulary: Known MachineTag.getName() name value.
TagNamespace - Enum in org.gbif.api.vocabulary: Known namespaces for tags.
TagService - Interface in org.gbif.api.service.registry: Service provides a set of operations on Tag.
tagValueAsDouble(MachineTag) - Static method in class org.gbif.api.util.MachineTagUtils
tagValueAsInteger(MachineTag) - Static method in class org.gbif.api.util.MachineTagUtils
TAXON_KEY - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
TaxonomicCoverage - Class in org.gbif.api.model.registry.eml: An individual coverage.
TaxonomicCoverage() - Constructor for class org.gbif.api.model.registry.eml.TaxonomicCoverage
TaxonomicCoverage(String, String, InterpretedEnum<String, Rank>) - Constructor for class org.gbif.api.model.registry.eml.TaxonomicCoverage
TaxonomicCoverages - Class in org.gbif.api.model.registry.eml
TaxonomicCoverages() - Constructor for class org.gbif.api.model.registry.eml.TaxonomicCoverages
TaxonomicCoverages(String, List<TaxonomicCoverage>) - Constructor for class org.gbif.api.model.registry.eml.TaxonomicCoverages
TaxonomicStatus - Enum in org.gbif.api.vocabulary: The taxonomic status of a taxon.
TaxStatusParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/taxStatus.txt.
TechnicalInstallationType - Enum in org.gbif.api.vocabulary: Deprecated.
This class is no longer used.
TemporalAccessorUtils - Class in org.gbif.common.parsers.date: Utility methods to work with TemporalAccessor
TemporalAccessorUtils() - Constructor for class org.gbif.common.parsers.date.TemporalAccessorUtils
TemporalCoverage - Class in org.gbif.api.model.registry.eml.temporal: The base of all types of temporal coverages.
TemporalCoverage() - Constructor for class org.gbif.api.model.registry.eml.temporal.TemporalCoverage
TemporalCoverageFormatterVisitor - Interface in org.gbif.api.util.formatter: Allows formatter to be dynamically selected based on the concrete type of TemporalCoverage at runtime.
TemporalParser - Interface in org.gbif.common.parsers.date: Main interface for date/time parsing based.
TemporalRangeParser - Class in org.gbif.common.parsers.date
TermMapListDeserializer - Class in org.gbif.api.jackson: Deprecated.
TermMapListDeserializer() - Constructor for class org.gbif.api.jackson.TermMapListDeserializer: Deprecated.
TermMapListSerializer - Class in org.gbif.api.jackson: Deprecated.
TermMapListSerializer() - Constructor for class org.gbif.api.jackson.TermMapListSerializer: Deprecated.
TEST_PREFIX - Static variable in class org.gbif.api.model.common.DOI: A DOI prefix provided by DataCite to be used in tests.
TextualMonthDateTokenizer - Class in org.gbif.common.parsers.date: The contract of the TextualMonthDateTokenizer is to break a string representing a date with a textual month representation into a list of TextualMonthDateTokenizer.DateToken.
TextualMonthDateTokenizer.DateToken - Class in org.gbif.common.parsers.date: Represents a possible candidate for date part.
TextualMonthDateTokenizer.DateTokens - Class in org.gbif.common.parsers.date: Contains the result of the tokenization.
TextualMonthDateTokenizer.TokenType - Enum in org.gbif.common.parsers.date
thenJoin(Function<String, String>, String...) - Static method in class org.gbif.utils.text.StringUtils: Apply a function then join the result using a space if not null.
ThreatStatus - Enum in org.gbif.api.vocabulary: The IUCN threat status.
ThreatStatusParser - Class in org.gbif.common.parsers
ThreeTenDateMultiParserListBuilder() - Constructor for class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateMultiParserListBuilder
ThreeTenDateParserListBuilder() - Constructor for class org.gbif.common.parsers.date.DateTimeParserBuilder.ThreeTenDateParserListBuilder
TitleDeserializer() - Constructor for class org.gbif.api.vocabulary.Country.TitleDeserializer
TitleSerializer() - Constructor for class org.gbif.api.vocabulary.Country.TitleSerializer
toArray() - Method in class org.gbif.utils.collection.CompactHashSet
toArray(Object[]) - Method in class org.gbif.utils.collection.CompactHashSet
toBoundingBox(int) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Returns the box of the given cell This may require some more work to avoid divide rounding errors
toBoundingBox(int, int) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Returns the box of the given cell and centi cell An attempt has been made to avoid rounding errors with doubles, but may need revisited
toCellId(Double, Double) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Determines the cell id for the Lat / Long provided.
toCentiCellId(Double, Double) - Static method in class org.gbif.common.parsers.geospatial.CellIdUtils: Determines the centi cell id for the given values
toDatasetKey() - Method in class org.gbif.api.util.DatasetKey: Generates the serialized dataset key as used in the Dataset class.
toDate(TemporalAccessor) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Transform a TemporalAccessor to a Date.
toDate(TemporalAccessor, boolean) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Transform a TemporalAccessor to a Date, rounding a partial date/time to the start of the period.
toEarliestLocalDateTime(TemporalAccessor, boolean) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Transform a TemporalAccessor to a LocalDateTime, rounding a partial date/time to the start of the period.
toFilePath(URL) - Static method in class org.gbif.utils.file.FileUtils
toGbif(NamePart) - Static method in class org.gbif.nameparser.NameParserGbifV1
toGbif(Rank) - Static method in class org.gbif.nameparser.NameParserGbifV1
toGeoDistanceString() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
tokenize(String) - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer: Tokenize a string into a TextualMonthDateTokenizer.DateTokens.
toKeywords() - Method in class org.gbif.api.model.registry.eml.KeywordCollection
toKeywords() - Method in interface org.gbif.api.model.registry.eml.Keywords
toKeywords() - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
toKeywords() - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
toKeywords() - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
toLatestLocalDateTime(TemporalAccessor, boolean) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Transform a TemporalAccessor to a LocalDateTime, rounding a partial date/time to the end of the period.
toString() - Method in class org.gbif.api.model.ChallengeCode
toString() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
toString() - Method in class org.gbif.api.model.checklistbank.Description
toString() - Method in class org.gbif.api.model.checklistbank.Distribution
toString() - Method in class org.gbif.api.model.checklistbank.NameUsage
toString() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
toString() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
toString() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
toString() - Method in class org.gbif.api.model.checklistbank.ParsedName
toString() - Method in class org.gbif.api.model.checklistbank.Reference
toString() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
toString() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
toString() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
toString() - Method in class org.gbif.api.model.checklistbank.TableOfContents
toString() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
toString() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
toString() - Method in class org.gbif.api.model.checklistbank.VernacularName
toString() - Method in class org.gbif.api.model.collections.Address
toString() - Method in class org.gbif.api.model.collections.AlternativeCode
toString() - Method in class org.gbif.api.model.collections.CollectionImportParams
toString() - Method in class org.gbif.api.model.collections.Contact
toString() - Method in class org.gbif.api.model.collections.duplicates.DuplicatesRequest
toString() - Method in class org.gbif.api.model.collections.InstitutionImportParams
toString() - Method in class org.gbif.api.model.collections.lookup.BaseEntityMatched
toString() - Method in class org.gbif.api.model.collections.lookup.CollectionMatched
toString() - Method in class org.gbif.api.model.collections.lookup.LookupParams
toString() - Method in class org.gbif.api.model.collections.lookup.Match
toString() - Method in class org.gbif.api.model.collections.MasterSourceMetadata
toString() - Method in class org.gbif.api.model.collections.OccurrenceMapping
toString() - Method in class org.gbif.api.model.collections.UserId
toString() - Method in class org.gbif.api.model.common.AbstractGbifUser
toString() - Method in class org.gbif.api.model.common.DOI
toString() - Method in class org.gbif.api.model.common.DoiData
toString() - Method in class org.gbif.api.model.common.GbifUser
toString() - Method in class org.gbif.api.model.common.Identifier
toString() - Method in class org.gbif.api.model.common.InterpretedField: Deprecated.
toString() - Method in class org.gbif.api.model.common.MediaObject
toString() - Method in class org.gbif.api.model.common.messaging.Response
toString() - Method in class org.gbif.api.model.common.paging.PageableBase
toString() - Method in class org.gbif.api.model.common.paging.PagingResponse
toString() - Method in class org.gbif.api.model.common.search.Facet.Count
toString() - Method in class org.gbif.api.model.common.search.Facet
toString() - Method in class org.gbif.api.model.common.search.SearchRequest
toString() - Method in class org.gbif.api.model.common.search.SearchResponse
toString() - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
toString() - Method in class org.gbif.api.model.common.search.SpellCheckResponse
toString() - Method in class org.gbif.api.model.common.User: Deprecated.
toString() - Method in class org.gbif.api.model.crawler.CrawlJob
toString() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
toString() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
toString() - Method in class org.gbif.api.model.crawler.GenericValidationReport
toString() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
toString() - Method in class org.gbif.api.model.metrics.cube.Dimension
toString() - Method in class org.gbif.api.model.metrics.cube.Rollup
toString() - Method in class org.gbif.api.model.metrics.RecordError: Deprecated.
toString() - Method in class org.gbif.api.model.occurrence.AgentIdentifier
toString() - Method in class org.gbif.api.model.occurrence.DownloadRequest
toString() - Method in class org.gbif.api.model.occurrence.DownloadStatistics
toString() - Method in class org.gbif.api.model.occurrence.Gadm
toString() - Method in class org.gbif.api.model.occurrence.GadmFeature
toString() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.Distance
toString() - Method in class org.gbif.api.model.occurrence.geo.DistanceUnit.GeoDistance
toString(double) - Method in enum org.gbif.api.model.occurrence.geo.DistanceUnit: Convert a value to a distance string
toString() - Method in enum org.gbif.api.model.occurrence.geo.DistanceUnit
toString() - Method in class org.gbif.api.model.occurrence.MeasurementOrFact
toString() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
toString() - Method in class org.gbif.api.model.occurrence.PredicateDownloadRequest
toString() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
toString() - Method in class org.gbif.api.model.pipelines.PipelineExecution
toString() - Method in class org.gbif.api.model.pipelines.PipelineProcess
toString() - Method in class org.gbif.api.model.pipelines.PipelineStep.MetricInfo
toString() - Method in class org.gbif.api.model.pipelines.PipelineStep
toString() - Method in class org.gbif.api.model.predicate.CompoundPredicate
toString() - Method in class org.gbif.api.model.predicate.FullTextSearchPredicate
toString() - Method in class org.gbif.api.model.predicate.GeoDistancePredicate
toString() - Method in class org.gbif.api.model.predicate.InPredicate
toString() - Method in class org.gbif.api.model.predicate.IsNotNullPredicate
toString() - Method in class org.gbif.api.model.predicate.IsNullPredicate
toString() - Method in class org.gbif.api.model.predicate.NotPredicate
toString() - Method in class org.gbif.api.model.predicate.RangePredicate
toString() - Method in class org.gbif.api.model.predicate.SimplePredicate
toString() - Method in class org.gbif.api.model.predicate.WithinPredicate
toString() - Method in class org.gbif.api.model.registry.Citation
toString() - Method in class org.gbif.api.model.registry.CitationContact
toString() - Method in class org.gbif.api.model.registry.Comment
toString() - Method in class org.gbif.api.model.registry.Contact
toString() - Method in class org.gbif.api.model.registry.Dataset
toString() - Method in class org.gbif.api.model.registry.eml.Collection
toString() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
toString() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
toString() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
toString() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
toString() - Method in class org.gbif.api.model.registry.eml.DataDescription
toString() - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
toString() - Method in class org.gbif.api.model.registry.eml.KeywordCollection
toString() - Method in class org.gbif.api.model.registry.eml.Project
toString() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
toString() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
toString() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
toString() - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
toString() - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
toString() - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
toString() - Method in class org.gbif.api.model.registry.Endpoint
toString() - Method in class org.gbif.api.model.registry.Grid
toString() - Method in class org.gbif.api.model.registry.Identifier
toString() - Method in class org.gbif.api.model.registry.Installation
toString() - Method in class org.gbif.api.model.registry.MachineTag
toString() - Method in class org.gbif.api.model.registry.Metadata
toString() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
toString() - Method in class org.gbif.api.model.registry.Network
toString() - Method in class org.gbif.api.model.registry.Node
toString() - Method in class org.gbif.api.model.registry.Organization
toString() - Method in class org.gbif.api.model.registry.search.collections.KeyCodeNameResult
toString() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
toString() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
toString() - Method in class org.gbif.api.model.registry.search.KeyTitleResult
toString() - Method in class org.gbif.api.model.registry.Tag
toString() - Method in class org.gbif.api.util.IsoDateInterval: Returns the date-time interval formatted as a single value where the from and to values are the same (e.g.
toString(boolean) - Method in class org.gbif.api.util.IsoDateInterval: Returns the date-time interval formatted as a single value where the from and to values are the same (e.g.
toString() - Method in class org.gbif.api.util.Range
toString() - Method in class org.gbif.api.v2.RankedName
toString() - Method in class org.gbif.common.parsers.core.KeyValue
toString() - Method in class org.gbif.common.parsers.core.ParseResult
toString() - Method in class org.gbif.common.parsers.date.AtomizedLocalDate
toString() - Method in class org.gbif.common.parsers.date.AtomizedLocalDateTime
toString() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearDayOfYear
toString() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearMonthDay
toString() - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateToken
toString() - Method in class org.gbif.common.parsers.date.TextualMonthDateTokenizer.DateTokens
toString() - Method in class org.gbif.common.parsers.geospatial.DoubleAccuracy
toString() - Method in class org.gbif.common.parsers.geospatial.LatLng
toString() - Method in class org.gbif.common.parsers.geospatial.LatLngBoundingBox
touch(File) - Static method in class org.gbif.utils.file.FileUtils: Creates an empty file or updates the last updated timestamp on the same as the unix command of the same name.
toWellKnownText() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
toWellKnownText() - Method in interface org.gbif.api.model.registry.eml.geospatial.Geometry
toWellKnownText() - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
toWellKnownText() - Method in class org.gbif.api.model.registry.eml.geospatial.Point
toWellKnownText() - Method in class org.gbif.api.model.registry.eml.geospatial.Polygon
Trim - Annotation Type in org.gbif.api.annotation: Indicates that the field is suitable for String trimming.
trim(String) - Static method in class org.gbif.utils.text.StringUtils: Strips a set of whitespace characters from the start and end of a String.
type - Variable in exception org.gbif.api.exception.UnparsableException
type() - Method in enum org.gbif.api.model.checklistbank.search.NameUsageSearchParameter
type(InstitutionType) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
Type - Enum in org.gbif.api.model.collections.suggestions
type() - Method in interface org.gbif.api.model.common.search.SearchParameter
type() - Method in enum org.gbif.api.model.literature.search.LiteratureSearchParameter
type() - Method in enum org.gbif.api.model.occurrence.search.InternalOccurrenceSearchParameter
type() - Method in enum org.gbif.api.model.occurrence.search.OccurrenceSearchParameter
type() - Method in enum org.gbif.api.model.registry.search.DatasetSearchParameter
TYPE_PARAM - Static variable in class org.gbif.api.model.registry.search.DatasetRequestSearchParams
TYPE_STATUS - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
TypeDesignationType - Enum in org.gbif.api.vocabulary: A vocabulary to be used for reasons for a type designation of a specimen or name.
TYPES - Static variable in enum org.gbif.api.vocabulary.IdentifierType
TypeSpecimen - Class in org.gbif.api.model.checklistbank: TypeSpecimen Model originally designed for both specimens and types, including type specimens, type species and type genera and simple specimens unrelated to types.
TypeSpecimen() - Constructor for class org.gbif.api.model.checklistbank.TypeSpecimen
typeSpecimenCount(String) - Method in class org.gbif.api.model.collections.request.CollectionSearchRequest.Builder
typeSpecimenCount(String) - Method in class org.gbif.api.model.collections.request.InstitutionSearchRequest.Builder
TypeSpecimenService - Interface in org.gbif.api.service.checklistbank: Service interface for TypeSpecimen Interface methods.
TypeStatus - Enum in org.gbif.api.vocabulary: A vocabulary to be used for a nomenclatural type status of a specimen or name.
TypeStatusParser - Class in org.gbif.common.parsers: Singleton implementation of the dictionary that uses the file /dictionaries/parse/typeStatus.txt.
TypifiedNameParser - Class in org.gbif.common.parsers: Singleton implementation using regex to extract a scientific name after a typestatus from a string.

U

UnableToGenerateCellIdException - Exception in org.gbif.common.parsers.geospatial: Used to indicate that a CellId cannot be instantiated.
UnableToGenerateCellIdException(String) - Constructor for exception org.gbif.common.parsers.geospatial.UnableToGenerateCellIdException
unescapeUnicodeChars(String) - Static method in class org.gbif.utils.text.StringUtils: Unescapes various unicode escapes if existing: java unicode escape, four hexadecimal digits \ uhhhh octal escape \nnn The octal value nnn, where nnn stands for 1 to 3 digits between ‘0’ and ‘7’.
ungzipFile(File, File, boolean) - Static method in class org.gbif.utils.file.CompressionUtil: Gunzip a file.
UnicodeUtils - Class in org.gbif.api.util: Utilities dealing with unicode strings
UnicodeUtils() - Constructor for class org.gbif.api.util.UnicodeUtils
unit - Variable in class org.gbif.api.model.occurrence.geo.DistanceUnit.Distance
UnknownCharsetException - Exception in org.gbif.utils.file
UnknownCharsetException(Exception) - Constructor for exception org.gbif.utils.file.UnknownCharsetException
UnknownCharsetException(String) - Constructor for exception org.gbif.utils.file.UnknownCharsetException
UnknownCharsetException(String, Exception) - Constructor for exception org.gbif.utils.file.UnknownCharsetException
UnknownDelimitersException - Exception in org.gbif.utils.file.csv
UnknownDelimitersException(Exception) - Constructor for exception org.gbif.utils.file.csv.UnknownDelimitersException
UnknownDelimitersException(String) - Constructor for exception org.gbif.utils.file.csv.UnknownDelimitersException
UnknownDelimitersException(String, Exception) - Constructor for exception org.gbif.utils.file.csv.UnknownDelimitersException
unlock(String) - Method in interface org.gbif.api.service.occurrence.DownloadLauncherService
unlockAll() - Method in interface org.gbif.api.service.occurrence.DownloadLauncherService
UnparsableException - Exception in org.gbif.api.exception: Exception thrown when a scientific name cannot be parsed.
UnparsableException(NameType, String) - Constructor for exception org.gbif.api.exception.UnparsableException
UnsupportedCompressionType() - Constructor for exception org.gbif.utils.file.CompressionUtil.UnsupportedCompressionType
UnsupportedCompressionType(String) - Constructor for exception org.gbif.utils.file.CompressionUtil.UnsupportedCompressionType
UnsupportedCompressionType(String, Throwable) - Constructor for exception org.gbif.utils.file.CompressionUtil.UnsupportedCompressionType
untarFile(File, File) - Static method in class org.gbif.utils.file.CompressionUtil: Extracts a plain TAR file.
untgzFile(File, File) - Static method in class org.gbif.utils.file.CompressionUtil: Extracts a gzipped TAR file.
unzipFile(File, File) - Static method in class org.gbif.utils.file.CompressionUtil: Defaults keepSubdirectories to false.
unzipFile(File, File, boolean) - Static method in class org.gbif.utils.file.CompressionUtil: Extracts a zipped file into a target directory.
update(T, boolean) - Method in interface org.gbif.api.service.collections.CollectionEntityService: Updates an existing entity.
update(T) - Method in interface org.gbif.api.service.collections.CrudService: Updates an existing entity.
update(W) - Method in interface org.gbif.api.service.common.CrudService: Updates the entity.
update(T) - Method in interface org.gbif.api.service.registry.NetworkEntityService: Updates an existing entity.
update(Download) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService: Update an existing occurrence download.
updateChangeSuggestion(R) - Method in interface org.gbif.api.service.collections.ChangeSuggestionService
updateContact(UUID, Contact) - Method in interface org.gbif.api.service.registry.ContactService: Updates the given contact for the target entity.
updateContactPerson(UUID, Contact) - Method in interface org.gbif.api.service.collections.ContactService: Updates a Contact contact in an entity.
updateDatasetProcessStatus(DatasetProcessStatus) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService: Persists the DatasetProcessStatus object which must exist.
updatePipelineStep(PipelineStep) - Method in interface org.gbif.api.service.pipelines.PipelinesHistoryService: Update the information of a pipeline step.
upper(Map<String, String>) - Static method in class org.gbif.utils.text.StringUtils: Uppercases all keys and values in a Map.
upperEndpoint() - Method in class org.gbif.api.util.Range
URIValidator - Class in org.gbif.api.util: Constrain validator that validates URI objects with a @HttpURI annotation.
URIValidator() - Constructor for class org.gbif.api.util.URIValidator
url(String...) - Static method in class org.gbif.utils.rs.RsGbifOrg
url2file(URL) - Static method in class org.gbif.utils.file.FileUtils
UrlParser - Class in org.gbif.common.parsers: Greedy URL parser assuming HTTP URIs in case no schema was given.
User - Class in org.gbif.api.model.common: Deprecated.
replaced by GbifUser
User() - Constructor for class org.gbif.api.model.common.User: Deprecated.
UserId - Class in org.gbif.api.model.collections: User ID for GRSciColl contacts.
UserId() - Constructor for class org.gbif.api.model.collections.UserId
UserId(IdType, String) - Constructor for class org.gbif.api.model.collections.UserId
UserPrincipal - Class in org.gbif.api.model.common: Deprecated.
replaced by GbifUserPrincipal
UserPrincipal(User) - Constructor for class org.gbif.api.model.common.UserPrincipal: Deprecated.
UserRole - Enum in org.gbif.api.vocabulary: Roles here shall not be defined in AppRole (validated by unit test).
UserService - Interface in org.gbif.api.service.common: Deprecated.
UTC_ZONE_ID - Static variable in class org.gbif.common.parsers.date.TemporalAccessorUtils
UTF8 - Static variable in class org.gbif.utils.file.FileUtils
UTF8_ENCODING - Static variable in class org.gbif.utils.file.properties.PropertiesUtil: When we encode strings, we always specify UTF8 encoding

V

validate(SearchParameter, String) - Static method in class org.gbif.api.util.SearchTypeValidator: Validates that a given parameter value matches the expected type of the parameter as defined by SearchParameter.type() and throws an IllegalArgumentException otherwise.
validateGeoDistance(String, String, String) - Static method in class org.gbif.api.util.SearchTypeValidator
ValidEmail - Annotation Type in org.gbif.api.util.validators.email: Annotation to indicate that an email has to be valid.
value - Variable in class org.gbif.api.model.occurrence.geo.DistanceUnit.Distance
valueOf(String) - Static method in enum org.gbif.api.model.checklistbank.NameUsageMatch.MatchType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.checklistbank.search.NameUsageSearchParameter: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.checklistbank.search.NameUsageSearchRequest.NameUsageQueryField: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.collections.Batch.State: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.collections.CollectionEntityType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.collections.lookup.Match.MatchType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.collections.lookup.Match.Reason: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.collections.lookup.Match.Status: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.collections.suggestions.Status: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.collections.suggestions.Type: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.common.DoiStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.common.export.ExportFormat: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.common.messaging.Request.OperationType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.common.messaging.Response.Status: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.common.messaging.Response.StatusCode: Returns the enum constant of this type with the specified name.
valueOf(int) - Static method in enum org.gbif.api.model.common.messaging.Response.StatusCode
valueOf(String) - Static method in enum org.gbif.api.model.crawler.FinishReason: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.crawler.ProcessState: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.literature.LiteratureRelevance: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.literature.LiteratureTopic: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.literature.LiteratureType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.literature.search.LiteratureSearchParameter: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.occurrence.Download.Status: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.occurrence.DownloadFormat: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.occurrence.DownloadType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.occurrence.geo.DistanceUnit: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.occurrence.search.InternalOccurrenceSearchParameter: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.occurrence.search.OccurrenceSearchParameter: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.pipelines.InterpretationType.RecordType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.pipelines.PipelineStep.Status: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.pipelines.RunPipelineResponse.ResponseStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.pipelines.StepRunner: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.pipelines.StepType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.registry.eml.curatorial.CuratorialUnitType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriodType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.registry.EndorsementStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.registry.metasync.MetasyncResult: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.model.registry.search.DatasetSearchParameter: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.util.IsoDateParsingUtils.IsoDateFormat: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.util.validators.identifierschemes.IdentifierScheme: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.AgentIdentifierType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.AppRole: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.BasisOfRecord: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.CitesAppendix: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.collections.AccessionStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.collections.CollectionContentType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.collections.Discipline: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.collections.IdType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.collections.InstitutionGovernance: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.collections.InstitutionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.collections.MasterSourceType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.collections.PreservationType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.collections.Source: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.CollectionsSortField: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.ContactType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.Continent: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.Country: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.CountryUsageSortField: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.DatasetSubtype: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.DatasetType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.DatasetUsageSortField: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.DistributionStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.EndpointType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.EstablishmentMeans: Deprecated.

Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.Extension: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.GbifRegion: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.Habitat: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.IdentifierType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.InstallationType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.InterpretationRemarkSeverity: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.Kingdom: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.Language: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.License: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.LifeStage: Deprecated.

Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.MaintenanceUpdateFrequency: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.MediaType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.MetadataType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.NamePart: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.NameType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.NameUsageIssue: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.NodeType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.NomenclaturalCode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.NomenclaturalStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.OccurrenceIssue: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.OccurrencePersistenceStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.OccurrenceSchemaType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.OccurrenceStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.OrganizationUsageSortField: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.Origin: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.ParticipationStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.PreservationMethodType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.ProcessingErrorType: Deprecated.

Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.Rank: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.RelationType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.Sex: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.SortOrder: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.TagName: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.TagNamespace: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.TaxonomicStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.TechnicalInstallationType: Deprecated.

Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.ThreatStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.TypeDesignationType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.TypeStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.api.vocabulary.UserRole: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.common.parsers.core.ParseResult.CONFIDENCE: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.common.parsers.core.ParseResult.STATUS: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.common.parsers.date.DateComponentOrdering: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.gbif.common.parsers.date.TextualMonthDateTokenizer.TokenType: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.gbif.api.model.checklistbank.NameUsageMatch.MatchType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.checklistbank.search.NameUsageSearchParameter: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.checklistbank.search.NameUsageSearchRequest.NameUsageQueryField: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.collections.Batch.State: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.collections.CollectionEntityType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.collections.lookup.Match.MatchType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.collections.lookup.Match.Reason: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.collections.lookup.Match.Status: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.collections.suggestions.Status: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.collections.suggestions.Type: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.common.DoiStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.common.export.ExportFormat: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.common.messaging.Request.OperationType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.common.messaging.Response.Status: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.common.messaging.Response.StatusCode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.crawler.FinishReason: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.crawler.ProcessState: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.literature.LiteratureRelevance: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.literature.LiteratureTopic: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.literature.LiteratureType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.literature.search.LiteratureSearchParameter: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.occurrence.Download.Status: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.occurrence.DownloadFormat: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.occurrence.DownloadType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.occurrence.geo.DistanceUnit: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.occurrence.search.InternalOccurrenceSearchParameter: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.occurrence.search.OccurrenceSearchParameter: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.pipelines.InterpretationType.RecordType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.pipelines.PipelineStep.Status: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.pipelines.RunPipelineResponse.ResponseStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.pipelines.StepRunner: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.pipelines.StepType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.registry.eml.curatorial.CuratorialUnitType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriodType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.registry.EndorsementStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.registry.metasync.MetasyncResult: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.model.registry.search.DatasetSearchParameter: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.util.IsoDateParsingUtils.IsoDateFormat: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.util.validators.identifierschemes.IdentifierScheme: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.AgentIdentifierType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.AppRole: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.BasisOfRecord: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.CitesAppendix: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.collections.AccessionStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.collections.CollectionContentType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.collections.Discipline: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.collections.IdType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.collections.InstitutionGovernance: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.collections.InstitutionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.collections.MasterSourceType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.collections.PreservationType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.collections.Source: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.CollectionsSortField: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.ContactType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.Continent: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.Country: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.CountryUsageSortField: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.DatasetSubtype: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.DatasetType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.DatasetUsageSortField: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.DistributionStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.EndpointType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.EstablishmentMeans: Deprecated.

Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.Extension: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.GbifRegion: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.Habitat: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.IdentifierType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.InstallationType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.InterpretationRemarkSeverity: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.Kingdom: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.Language: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.License: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.LifeStage: Deprecated.

Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.MaintenanceUpdateFrequency: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.MediaType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.MetadataType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.NamePart: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.NameType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.NameUsageIssue: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.NodeType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.NomenclaturalCode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.NomenclaturalStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.OccurrenceIssue: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.OccurrencePersistenceStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.OccurrenceSchemaType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.OccurrenceStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.OrganizationUsageSortField: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.Origin: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.ParticipationStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.PreservationMethodType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.ProcessingErrorType: Deprecated.

Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.Rank: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.RelationType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.Sex: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.SortOrder: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.TagName: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.TagNamespace: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.TaxonomicStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.TechnicalInstallationType: Deprecated.

Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.ThreatStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.TypeDesignationType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.TypeStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.api.vocabulary.UserRole: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.common.parsers.core.ParseResult.CONFIDENCE: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.common.parsers.core.ParseResult.STATUS: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.common.parsers.date.DateComponentOrdering: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.gbif.common.parsers.date.TextualMonthDateTokenizer.TokenType: Returns an array containing the constants of this enum type, in the order they are declared.
VerbatimNameUsage - Class in org.gbif.api.model.checklistbank
VerbatimNameUsage() - Constructor for class org.gbif.api.model.checklistbank.VerbatimNameUsage
VerbatimOccurrence - Class in org.gbif.api.model.occurrence: An extended map holding all core terms of an occurrence record.
VerbatimOccurrence() - Constructor for class org.gbif.api.model.occurrence.VerbatimOccurrence
verbatimOccurrencesPersistedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
verbatimOccurrencesPersistedSuccessful(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
VerbatimTimePeriod - Class in org.gbif.api.model.registry.eml.temporal: A verbatim (e.g.
VerbatimTimePeriod() - Constructor for class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
VerbatimTimePeriodType - Enum in org.gbif.api.model.registry.eml.temporal: The definition of the available contact types.
VernacularName - Class in org.gbif.api.model.checklistbank: VernacularName Model Object represents a vernacular name for a scientific taxon.
VernacularName() - Constructor for class org.gbif.api.model.checklistbank.VernacularName
VernacularNameService - Interface in org.gbif.api.service.checklistbank: Service interface for VernacularName Interface methods.
ViafValidator - Class in org.gbif.api.util.validators.identifierschemes
ViafValidator() - Constructor for class org.gbif.api.util.validators.identifierschemes.ViafValidator
VocabularyConcept() - Constructor for class org.gbif.api.model.event.Event.VocabularyConcept
VocabularyUtils - Class in org.gbif.api.util

W

WHITESPACES_LIST - Static variable in class org.gbif.utils.text.StringUtils: This includes some special whitespaces which not present in standard trim list: U+0085 Next Line (NEL) U+00A0 No-Break Space (NBSP) U+000C Form Feed (FF) U+2007 Figure Space
WIKIDATA_PATTERN - Static variable in class org.gbif.api.util.IdentifierUtils
WikidataValidator - Class in org.gbif.api.util.validators.identifierschemes
WikidataValidator() - Constructor for class org.gbif.api.util.validators.identifierschemes.WikidataValidator
WithinPredicate - Class in org.gbif.api.model.predicate: This predicate checks if an occurrence location falls within the given WKT geometry value.
WithinPredicate(String) - Constructor for class org.gbif.api.model.predicate.WithinPredicate: Builds a new within predicate for a single, simple geometry as Well Known Text (WKT).
withinRange(TemporalAccessor, TemporalAccessor, TemporalAccessor) - Static method in class org.gbif.common.parsers.date.TemporalAccessorUtils: Given two TemporalAccessor with at least day resolution (representing the bounds), and another TemporalAccessor of day resolution, this method checks if the bounds contain the third argument.
WorkflowStep - Class in org.gbif.api.model.pipelines: Models a step in a Pipeline workflow.
WorkflowStep() - Constructor for class org.gbif.api.model.pipelines.WorkflowStep

Y

yDiscarded() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearDayOfYear
yDiscarded() - Method in class org.gbif.common.parsers.date.DatePartsNormalizer.NormalizedYearMonthDay
YEAR - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube

Z

zipDir(File, File) - Static method in class org.gbif.utils.file.CompressionUtil: Zip a directory with all files but skipping included subdirectories.
zipDir(File, File, boolean) - Static method in class org.gbif.utils.file.CompressionUtil: Zip a directory with all files.
zipFile(File, File) - Static method in class org.gbif.utils.file.CompressionUtil
zipFiles(Collection<File>, File, File) - Static method in class org.gbif.utils.file.CompressionUtil: Creates a zip archive from a given collection of files.

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