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A

AbstractGbifUser - Class in org.gbif.api.model.common
An abstract GBIF user account.
AbstractGbifUser() - Constructor for class org.gbif.api.model.common.AbstractGbifUser
 
acceptFormatter(TemporalCoverageFormatterVisitor) - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
 
acceptFormatter(TemporalCoverageFormatterVisitor) - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
 
acceptFormatter(TemporalCoverageFormatterVisitor) - Method in class org.gbif.api.model.registry.eml.temporal.TemporalCoverage
Accept a TemporalCoverageFormatterVisitor for formatting purpose.
acceptFormatter(TemporalCoverageFormatterVisitor) - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
 
AcTerm - Enum in org.gbif.dwc.terms
All Audubon Core terms with namespace http://rs.tdwg.org/ac/terms/.
add(T) - Method in class org.gbif.utils.collection.CompactHashSet
Adds the specified element to this set if it is not already present.
addAddress(String) - Method in class org.gbif.api.model.registry.Contact
 
addBasisOfRecordFilter(BasisOfRecord) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addCatalogNumberFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addChecklistFilter(UUID) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addClassKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addComment(UUID, Comment) - Method in interface org.gbif.api.service.registry.CommentService
 
addConstituent(UUID, UUID) - Method in interface org.gbif.api.service.registry.NetworkService
Adds an existing dataset to the list of constituents of a network.
addContact(Contact) - Method in class org.gbif.api.model.registry.eml.Project
Add contact to Contact List.
addContact(UUID, Contact) - Method in interface org.gbif.api.service.registry.ContactService
 
addContinentFilter(Continent) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addContinentFilter(Continent) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
Filters dataset by a continent of the geospatial coverage.
addCountryFilter(Country) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addCountryFilter(Country) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
Filters dataset by a country of the geospatial coverage.
addCoverages(TaxonomicCoverage) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
 
addCuratorialUnitComposite(CuratorialUnitComposite) - Method in class org.gbif.api.model.registry.eml.Collection
Adds a CuratorialUnitComposite to the Collection's list of CuratorialUnitComposit.
addDatasetKeyFilter(UUID) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addDecadeFilter(int) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
Filters datasets by their temporal coverage broken down to decades.
addDecimalLatitudeFilter(double) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addDecimalLongitudeFilter(double) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addDescription(int, Language, String) - Method in class org.gbif.api.model.checklistbank.TableOfContents
 
addDeviation(String) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
addElevationFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addEmail(String) - Method in class org.gbif.api.model.registry.Contact
 
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Dataset
 
addEndpoint(Endpoint) - Method in interface org.gbif.api.model.registry.Endpointable
 
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Installation
 
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Network
 
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Node
 
addEndpoint(Endpoint) - Method in class org.gbif.api.model.registry.Organization
 
addEndpoint(UUID, Endpoint) - Method in interface org.gbif.api.service.registry.EndpointService
 
addEstablishmentMeansFilter(EstablishmentMeans) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addEventDateFilter(Date) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addExtinctFilter(boolean) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addFacetPage(P, int, int) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
Sets the paging setting of facet parameter.
addFacets(P...) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
 
addFamilyKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addGenusKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addGeometryFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addHabitatFilter(Habitat) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addHasCoordinateFilter(boolean) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addHigherTaxonFilter(int) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addHomepage(URI) - Method in class org.gbif.api.model.registry.Contact
 
addHostingOrgFilter(UUID) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
 
addIdentifier(UUID, Identifier) - Method in interface org.gbif.api.service.registry.IdentifierService
 
addInstitutionCodeFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addIssue(NameUsageIssue) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
addIssue(OccurrenceIssue) - Method in class org.gbif.api.model.occurrence.Occurrence
 
addIssueFilter(NameUsageIssue) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addIssueFilter(OccurrenceIssue) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addKeyword(String) - Method in class org.gbif.api.model.registry.eml.KeywordCollection
Add keyword to keywords Set.
addKeywordFilter(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
Filters datasets by a keyword given in EML or as simple, public tags.
addKeywordFilter(Tag) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
Filters dataset by a tag.
addKingdomKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addLastInterpretedFilter(Date) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Dataset
 
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Endpoint
 
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Installation
 
addMachineTag(MachineTag) - Method in interface org.gbif.api.model.registry.MachineTaggable
 
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Network
 
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Node
 
addMachineTag(MachineTag) - Method in class org.gbif.api.model.registry.Organization
 
addMachineTag(UUID, MachineTag) - Method in interface org.gbif.api.service.registry.MachineTagService
 
addMachineTag(UUID, String, String, String) - Method in interface org.gbif.api.service.registry.MachineTagService
 
addMediaTypeFilter(MediaType) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addMethodStep(String) - Method in class org.gbif.api.model.registry.eml.SamplingDescription
 
addMonthFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addOccurrenceIDFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addOffset(long) - Method in class org.gbif.api.model.common.paging.PageableBase
Adds to existing offset, setting offset to zero if it would be negative.
addOrderKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addOriginFilter(Origin) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addParameter(P, Iterable<String>) - Method in class org.gbif.api.model.common.search.SearchRequest
Adds the specified parameter.
addParameter(P, String...) - Method in class org.gbif.api.model.common.search.SearchRequest
Adds the specified parameter.
addParameter(P, String) - Method in class org.gbif.api.model.common.search.SearchRequest
Adds the specified parameter.
addParameter(P, long) - Method in class org.gbif.api.model.common.search.SearchRequest
Adds the specified long parameter.
addParameter(P, int) - Method in class org.gbif.api.model.common.search.SearchRequest
Adds the specified int parameter.
addParameter(P, double) - Method in class org.gbif.api.model.common.search.SearchRequest
Adds the specified double parameter.
addParameter(P, boolean) - Method in class org.gbif.api.model.common.search.SearchRequest
Adds the specified boolean parameter.
addParameter(P, Enum<?>) - Method in class org.gbif.api.model.common.search.SearchRequest
Adds the specified parameter.
addParameter(P, Date) - Method in class org.gbif.api.model.common.search.SearchRequest
Adds the specified date parameter as an ISO date.
addPhone(String) - Method in class org.gbif.api.model.registry.Contact
 
addPhylumKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addPoint(Point) - Method in class org.gbif.api.model.registry.eml.geospatial.Polygon
 
addPosition(String) - Method in class org.gbif.api.model.registry.Contact
 
addProjectIdentifier(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
 
addPublishingCountryFilter(Country) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addPublishingCountryFilter(Country) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
Filters dataset by the owning organizations country.
addPublishingOrgFilter(UUID) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
 
addRankFilter(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addRecordedByFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addRecordNumberFilter(String) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
Address - Interface in org.gbif.api.model.registry
A package visible providing the commonality for addresses, including the constraint validations.
addRole(UserRole) - Method in class org.gbif.api.model.common.AbstractGbifUser
 
addRole(UserRole) - Method in class org.gbif.api.model.common.User
Deprecated.
 
addSpatialIssueFilter(boolean) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addSpeciesKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addSubGenusKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addSubTypeFilter(DatasetSubtype) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
 
addTag(UUID, String) - Method in interface org.gbif.api.service.registry.TagService
 
addTag(UUID, Tag) - Method in interface org.gbif.api.service.registry.TagService
Add a new Tag to a target entity.
addTaxonKey(int) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
 
addTaxonKeyFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addTaxonomicStatusFilter(TaxonomicStatus) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addTaxonomicStatusFilter(NomenclaturalStatus) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addTerm(String, Term) - Method in class org.gbif.dwc.terms.TermFactory
 
addTerm(String, Term, boolean) - Method in class org.gbif.dwc.terms.TermFactory
 
addThreatStatusFilter(ThreatStatus) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
addTypeFilter(DatasetType) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
 
addTypeStatusFilter(TypeStatus) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
addUserId(String) - Method in class org.gbif.api.model.registry.Contact
 
addUserId(String, String) - Method in class org.gbif.api.model.registry.Contact
Adds a new user id that is assembled from a directory name and a local id within it.
addYear(int) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
 
addYearFilter(int) - Method in class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
alternativeNames() - Method in enum org.gbif.dwc.terms.AcTerm
 
alternativeNames() - Method in enum org.gbif.dwc.terms.DcElement
 
alternativeNames() - Method in enum org.gbif.dwc.terms.DcTerm
 
alternativeNames() - Method in enum org.gbif.dwc.terms.DwcTerm
Array of alternative simple names in use for the term.
alternativeNames() - Method in enum org.gbif.dwc.terms.EolReferenceTerm
 
alternativeNames() - Method in enum org.gbif.dwc.terms.GbifInternalTerm
 
alternativeNames() - Method in enum org.gbif.dwc.terms.GbifTerm
Array of alternative simple names in use for the term.
alternativeNames() - Method in enum org.gbif.dwc.terms.IucnTerm
 
alternativeNames() - Method in enum org.gbif.dwc.terms.XmpRightsTerm
 
alternativeNames() - Method in enum org.gbif.dwc.terms.XmpTerm
 
alternatives - Variable in enum org.gbif.dwc.terms.DcElement
 
alternatives - Variable in enum org.gbif.dwc.terms.DcTerm
 
AnnotationUtils - Class in org.gbif.utils
Utility method to work with annotations.
AnnotationUtils() - Constructor for class org.gbif.utils.AnnotationUtils
 
append(Response<R>) - Method in class org.gbif.api.model.common.messaging.ResponseChain
Adds a response to the list of related response.
AppPrincipal - Class in org.gbif.api.model.common
Similar to GbifUserPrincipal but represents an application instead of a user.
AppPrincipal(String, String) - Constructor for class org.gbif.api.model.common.AppPrincipal
AppPrincipal constructor.
AppRole - Enum in org.gbif.api.vocabulary
Role(s) that can be assigned to authenticated application.
arrayMerge(T[]...) - Static method in class org.gbif.utils.collection.ArrayUtils
 
arrayMerge(byte[]...) - Static method in class org.gbif.utils.collection.ArrayUtils
 
ArrayUtils - Class in org.gbif.utils.collection
 
ascii(String) - Static method in class org.gbif.api.util.UnicodeUtils
Replaces all diacretics with their ascii counterpart.
at(Dimension<Country>, Country) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
Adds an country type dimension to the address.
at(Dimension<Language>, Language) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
Adds an language type dimension to the address.
at(Dimension<? extends Enum<?>>, Enum<?>) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
Adds an enumerated type dimension to the address.
at(Dimension<Boolean>, boolean) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
Adds a boolen typed dimension to the address.
at(Dimension<Double>, double) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
Adds a double typed dimension to the address.
at(Dimension<Float>, float) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
Adds a float typed dimension to the address.
at(Dimension<Integer>, int) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
Adds an integer typed dimension to the address.
at(Dimension<String>, String) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
Adds an String typed dimension to the address.
at(Dimension<UUID>, UUID) - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
Adds a UUID typed dimension to the address.
authenticate(String, String) - Method in interface org.gbif.api.service.common.IdentityAccessService
Authenticates a user.
authenticate(String, String) - Method in interface org.gbif.api.service.common.UserService
Deprecated.
Authenticates a user.
authorityUrl(String) - Static method in class org.gbif.utils.rs.RsGbifOrg
 
authorshipComplete() - Method in class org.gbif.api.model.checklistbank.ParsedName
 

B

BASIS_OF_RECORD - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
 
BasisOfRecord - Enum in org.gbif.api.vocabulary
A simple enumeration of all DarwinCore values of BasisOfRecord legal for occurrences.
BeanHtmlSanitizer - Class in org.gbif.utils.html
Simple wrapper around OWASP Html Sanitizer to apply it to all String properties of a bean.
BeanHtmlSanitizer() - Constructor for class org.gbif.utils.html.BeanHtmlSanitizer
 
BigDecimalUtils - Class in org.gbif.utils.number
Utility class to work with BigDecimal.
BomSafeInputStreamWrapper - Class in org.gbif.utils.file
Deprecated.
use org.apache.commons.io.input.BOMInputStream instead
BomSafeInputStreamWrapper(InputStream) - Constructor for class org.gbif.utils.file.BomSafeInputStreamWrapper
Deprecated.
 
BoundingBox - Class in org.gbif.api.model.registry.eml.geospatial
Geographic coverage geometry in the form of 4 sided bounding box.
BoundingBox() - Constructor for class org.gbif.api.model.registry.eml.geospatial.BoundingBox
 
BoundingBox(double, double, double, double) - Constructor for class org.gbif.api.model.registry.eml.geospatial.BoundingBox
 
build() - Method in class org.gbif.api.model.common.messaging.Request.Builder
 
build() - Method in class org.gbif.api.model.common.messaging.Response.Builder
 
build() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
build() - Method in class org.gbif.api.model.metrics.cube.ReadBuilder
 
build() - Method in class org.gbif.api.model.metrics.RecordError.Builder
Deprecated.
 
build(String) - Static method in class org.gbif.dwc.terms.UnknownTerm
 
build(String, String) - Static method in class org.gbif.dwc.terms.UnknownTerm
 
build(File, String, boolean) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
Build a CSVReader with specific delimiter and presence or not of a header line.
build(File, String, String, Character, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
Build a CSVReader with specific encoding, delimiter, quotes character and number of header row(s).
build(File, String, String, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
Build a CSVReader with specific encoding, delimiter and number of header row(s) but default quote character (quotation marks)
build(InputStream, String, String, Character, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
Build a CSVReader with specific encoding, delimiter quotes and number of header row(s)
build(File, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
Build a CSVReader and try to detect the encoding, delimiter and quotes.
build(File) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
Assumes 1 header row
Builder() - Constructor for class org.gbif.api.model.common.messaging.Request.Builder
 
Builder() - Constructor for class org.gbif.api.model.common.messaging.Response.Builder
 
builder() - Static method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
Builder() - Constructor for class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
builder() - Static method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
Builder() - Constructor for class org.gbif.api.model.metrics.RecordError.Builder
Deprecated.
 
buildName(boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Method in class org.gbif.api.model.checklistbank.ParsedName
build a name controlling all available flags for name parts to be included in the resulting name.
buildRange(T, T) - Static method in class org.gbif.api.util.SearchTypeValidator
Builds a closed range from two given values, but accepts nulls which are converted into unbound ranges in the guava instance.
buildTabReader(InputStream, String, Integer) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
 
buildUtf8TabReader(InputStream) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
 
byNubUsageId(int) - Static method in enum org.gbif.api.vocabulary.Kingdom
Deprecated.
please use byNubUsageId(int) instead
byNubUsageKey(int) - Static method in enum org.gbif.api.vocabulary.Kingdom
Looks up a kingdom by its nub usage key.
byteArrayToInt(byte[]) - Static method in class org.gbif.utils.collection.ArrayUtils
 
bytes(long) - Static method in class org.gbif.utils.HumanSize
 

C

cancel(String) - Method in interface org.gbif.api.service.occurrence.DownloadRequestService
Cancels running download.
canonicalName() - Method in class org.gbif.api.model.checklistbank.ParsedName
The canonical name sensu strictu with nothing else but 3 name parts at max (genus, species, infraspecific).
canonicalNameComplete() - Method in class org.gbif.api.model.checklistbank.ParsedName
The code compliant, canonical name with rank & hybrid marker, authorship and cultivar or strain name included.
canonicalNameWithMarker() - Method in class org.gbif.api.model.checklistbank.ParsedName
The code compliant, canonical name with 3 name parts at max (genus, species, infraspecific), a rank marker for infraspecific names and cultivar or strain epithets.
canonicalSpeciesName() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
catalogNumber(String) - Method in class org.gbif.api.model.metrics.RecordError.Builder
Deprecated.
 
CharsetDetection - Class in org.gbif.utils.file
Utility class to guess the encoding of a given file or byte array.
CHECKLIST_DATASET_SUBTYPES - Static variable in enum org.gbif.api.vocabulary.DatasetSubtype
A set of all DatasetSubtype that belong to DatasetType CHECKLIST.
Citation - Class in org.gbif.api.model.registry
A citation can have one or both of a textual component and an identifier which can be of any form, but expected to be resolvable in some way such as an LSID, DOI or similar.
Citation() - Constructor for class org.gbif.api.model.registry.Citation
 
Citation(String, String) - Constructor for class org.gbif.api.model.registry.Citation
 
CitesAppendix - Enum in org.gbif.api.vocabulary
Vocabulary for the 3 CITES (Convention on International Trade in Endangered Species of Wild Fauna and Flora) Appendix numbers.
CLASS_TERMS - Static variable in enum org.gbif.dwc.terms.DwcTerm
List of all class terms in dwc.
ClassificationUtils - Class in org.gbif.api.util
 
classpath2Filepath(String) - Static method in class org.gbif.utils.file.FileUtils
 
classpathStream(String) - Static method in class org.gbif.utils.file.FileUtils
 
classpathStream(String) - Method in class org.gbif.utils.file.InputStreamUtils
 
clear() - Method in class org.gbif.utils.collection.CompactHashSet
Removes all of the elements from this set.
ClosableIterator<T> - Interface in org.gbif.utils.file
An iterator that needs to be explicitly closed when it is not used anymore.
ClosableReportingIterator<T> - Interface in org.gbif.utils.file
Interface that extends the ClosableIterator providing a means to check if there is an error, log what it is, store the actual Exception, and skip over it to continue reading.
close() - Method in class org.gbif.utils.file.csv.CSVReader
 
coalesce(T...) - Static method in class org.gbif.utils.ObjectUtils
Returns the first of the given parameters that is not null.
coalesce(Iterable<T>) - Static method in class org.gbif.utils.ObjectUtils
 
COL_DATASET_KEY - Static variable in class org.gbif.api.model.Constants
The dataset key for the Catalog of Life.
Collection - Class in org.gbif.api.model.registry.eml
Collection data for the Dataset.
Collection() - Constructor for class org.gbif.api.model.registry.eml.Collection
 
Collection(String, String, String, PreservationMethodType, List<CuratorialUnitComposite>) - Constructor for class org.gbif.api.model.registry.eml.Collection
 
collectionCode(String) - Method in class org.gbif.api.model.metrics.RecordError.Builder
Deprecated.
 
columnsToSet(InputStream, int...) - Static method in class org.gbif.utils.file.FileUtils
 
columnsToSet(InputStream, Set<String>, int...) - Static method in class org.gbif.utils.file.FileUtils
Reads a file and returns a unique set of multiple columns from lines which are no comments (starting with #) and trims whitespace.
Comment - Class in org.gbif.api.model.registry
 
Comment() - Constructor for class org.gbif.api.model.registry.Comment
 
Commentable - Interface in org.gbif.api.model.registry
Generic comment interface for entities.
CommentService - Interface in org.gbif.api.service.registry
 
CompactHashSet<T> - Class in org.gbif.utils.collection
A HashSet implementation taken from Ontopia which is both faster and more compact than java.util.HashSet

INTERNAL: Implements the Set interface more compactly than java.util.HashSet by using a closed hashtable.

CompactHashSet() - Constructor for class org.gbif.utils.collection.CompactHashSet
Constructs a new, empty set.
CompactHashSet(Collection) - Constructor for class org.gbif.utils.collection.CompactHashSet
Constructs a new set containing the elements in the specified collection.
CompactHashSet(int) - Constructor for class org.gbif.utils.collection.CompactHashSet
Constructs a new, empty set.
compare(Term, Term) - Method in class org.gbif.dwc.terms.TermComparator
 
compare(String, String) - Method in class org.gbif.utils.text.LineComparator
 
compare(String, String) - Method in class org.gbif.utils.text.StringComparator
 
compare(String, String) - Method in class org.gbif.utils.text.StringLengthComparator
 
CompoundPredicate - Class in org.gbif.api.model.occurrence.predicate
A compound predicate is a Predicate that itself contains other Predicates.
CompressionUtil - Class in org.gbif.utils.file
 
CompressionUtil.UnsupportedCompressionType - Exception in org.gbif.utils.file
 
computeCompleteName() - Method in class org.gbif.api.model.registry.Contact
Compute and returns the complete name in the form: FirstName LastName.
ConfirmationKeyParameter - Class in org.gbif.api.model.registry
Confirmation key is a UUID used to confirm an entity.
ConfirmationKeyParameter() - Constructor for class org.gbif.api.model.registry.ConfirmationKeyParameter
 
ConfirmationKeyParameter(UUID) - Constructor for class org.gbif.api.model.registry.ConfirmationKeyParameter
 
confirmEndorsement(UUID, UUID) - Method in interface org.gbif.api.service.registry.OrganizationService
Confirm the endorsement of a new Organization by providing a confirmationKey.
ConjunctionPredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate is "AND"-ing its subpredicates together.
ConjunctionPredicate(Collection<Predicate>) - Constructor for class org.gbif.api.model.occurrence.predicate.ConjunctionPredicate
 
Constants - Class in org.gbif.api.model
Common variables used by API.
constituentDatasets(UUID, DatasetService) - Static method in class org.gbif.api.util.iterables.Iterables
 
Contact - Class in org.gbif.api.model.registry
 
Contact() - Constructor for class org.gbif.api.model.registry.Contact
 
Contactable - Interface in org.gbif.api.model.registry
Generic contact interface for entities.
ContactService - Interface in org.gbif.api.service.registry
 
ContactType - Enum in org.gbif.api.vocabulary
Enumeration for all contact types.
contains(Object) - Method in class org.gbif.utils.collection.CompactHashSet
Returns true if this set contains the specified element.
content(T) - Method in class org.gbif.api.model.common.messaging.Request.Builder
 
content(T) - Method in class org.gbif.api.model.common.messaging.Response.Builder
 
context(Map<String, String>) - Method in class org.gbif.api.model.common.messaging.Request.Builder
 
contextParam(Map.Entry<String, String>) - Method in class org.gbif.api.model.common.messaging.Request.Builder
 
contextParam(String, String) - Method in class org.gbif.api.model.common.messaging.Request.Builder
 
Continent - Enum in org.gbif.api.vocabulary
Enumeration for all continents based on the 7 number model found on Wikipedia.
copy(File, String, boolean, String...) - Static method in class org.gbif.utils.file.ResourcesUtil
Copies classpath resources to real files.
copyLinneanClassification(LinneanClassification, LinneanClassification) - Static method in class org.gbif.api.util.ClassificationUtils
Copies all linnean classification based higher taxon names from one instance to another.
copyLinneanClassificationKeys(LinneanClassificationKeys, LinneanClassificationKeys) - Static method in class org.gbif.api.util.ClassificationUtils
Copies all linnean classification based higher taxon keys from one instance to another.
copyPagingValues(Pageable) - Method in class org.gbif.api.model.common.paging.PageableBase
Utility method to copy paging values.
copyStreams(InputStream, OutputStream) - Static method in class org.gbif.utils.file.FileUtils
 
copyStreamToFile(InputStream, File) - Static method in class org.gbif.utils.file.FileUtils
 
copyTo(Response<?>) - Method in class org.gbif.api.model.common.messaging.Response
 
Count() - Constructor for class org.gbif.api.model.common.search.Facet.Count
Null/empty constructor.
Count(String, Long) - Constructor for class org.gbif.api.model.common.search.Facet.Count
Full constructor.
countriesForPublishingCountry(Country) - Method in interface org.gbif.api.service.occurrence.OccurrenceCountryIndexService
Lists all countries occurrences are falling into that have been published by a given country.
COUNTRY - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
 
Country - Enum in org.gbif.api.vocabulary
Enumeration for all current ISO 3166-1 ALPHA2 country codes using 2 letters, with the exception of TW which is overridden by GBIF.
Country.IsoDeserializer - Class in org.gbif.api.vocabulary
Deserializes the value from a 2 letter ISO format.
Country.IsoSerializer - Class in org.gbif.api.vocabulary
Serializes the value in a 2 letter ISO format.
Country.TitleDeserializer - Class in org.gbif.api.vocabulary
Deserializes the value from an english country title exactly as given by the enumeration.
Country.TitleSerializer - Class in org.gbif.api.vocabulary
Serializes the value as the english country title.
crawlContext(String) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
CrawlJob - Class in org.gbif.api.model.crawler
This class represents a job to be worked on by a crawler.
CrawlJob(UUID, EndpointType, URI, int, Map<String, String>) - Constructor for class org.gbif.api.model.crawler.CrawlJob
Creates a new crawl job.
CrawlJob(UUID, Integer, EndpointType, URI) - Constructor for class org.gbif.api.model.crawler.CrawlJob
Constructor with mandatory fields.
crawlJob(CrawlJob) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
create(W) - Method in interface org.gbif.api.service.common.CrudService
Persists a new entity.
create(DownloadRequest) - Method in interface org.gbif.api.service.occurrence.DownloadRequestService
Creates a download request.
create(DatasetOccurrenceDownloadUsage) - Method in interface org.gbif.api.service.registry.DatasetOccurrenceDownloadUsageService
Persists data about the usage of dataset in an occurrence download.
create(T) - Method in interface org.gbif.api.service.registry.NetworkEntityService
 
create(Download) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService
Persists the occurrence download object.
createDatasetProcessStatus(DatasetProcessStatus) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService
Persists the DatasetProcessStatus object.
createMetasync(MetasyncHistory) - Method in interface org.gbif.api.service.registry.MetasyncHistoryService
Persists the MetasyncHistory object.
createTempDir() - Static method in class org.gbif.utils.file.FileUtils
 
createTempDir(String, String) - Static method in class org.gbif.utils.file.FileUtils
 
CrudService<T,W,K> - Interface in org.gbif.api.service.common
A generic CRUD service interface for any writable entity.
CSVMetadata() - Constructor for class org.gbif.utils.file.csv.CSVReaderFactory.CSVMetadata
 
CSVReader - Class in org.gbif.utils.file.csv
 
CSVReader(File, String, String, Character, Integer) - Constructor for class org.gbif.utils.file.csv.CSVReader
 
CSVReader(InputStream, String, String, Character, Integer) - Constructor for class org.gbif.utils.file.csv.CSVReader
 
CSVReader(InputStream, String, String, Character, Integer, int) - Constructor for class org.gbif.utils.file.csv.CSVReader
 
CSVReaderFactory - Class in org.gbif.utils.file.csv
 
CSVReaderFactory() - Constructor for class org.gbif.utils.file.csv.CSVReaderFactory
 
CSVReaderFactory.CSVMetadata - Class in org.gbif.utils.file.csv
Data about the CSV file
CubeService - Interface in org.gbif.api.service.metrics
The cube API service, for reading addressable counts from a basic cube.
CuratorialUnit - Class in org.gbif.api.model.registry.eml.curatorial
The base class of all curatorial units.
CuratorialUnitComposite - Class in org.gbif.api.model.registry.eml.curatorial
Composite class, combining fields from CuratorialUnitCount and CuratorialUnitRange for simpler parsing of curatorial units, since both count and range types share the same root element.
CuratorialUnitComposite() - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
CuratorialUnitComposite(int, int, int, int, String) - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
CuratorialUnitCount - Class in org.gbif.api.model.registry.eml.curatorial
Used for acuratorial unit count with uncertainty.
CuratorialUnitCount() - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
 
CuratorialUnitCount(CuratorialUnitType, String, int, int) - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
 
CuratorialUnitRange - Class in org.gbif.api.model.registry.eml.curatorial
Used to indicate that the curatorial unit falls within a range of values.
CuratorialUnitRange() - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
 
CuratorialUnitRange(CuratorialUnitType, String, int, int) - Constructor for class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
 
CuratorialUnitType - Enum in org.gbif.api.model.registry.eml.curatorial
Allows for typed units.
currLineNumber() - Method in class org.gbif.utils.file.csv.CSVReader
 
CUSTOM_CODES - Static variable in enum org.gbif.api.vocabulary.Country
A set of all 2 and 3 letter codes that are reserved by ISO for custom application specific usages.

D

DataDescription - Class in org.gbif.api.model.registry.eml
Describes the format of externally available data on a URL.
DataDescription() - Constructor for class org.gbif.api.model.registry.eml.DataDescription
 
DataDescription(String, String, URI, String, String) - Constructor for class org.gbif.api.model.registry.eml.DataDescription
 
Dataset - Class in org.gbif.api.model.registry
A GBIF dataset which provides occurrence data, checklist data, sampling event data or metadata.
Dataset() - Constructor for class org.gbif.api.model.registry.Dataset
 
DATASET_KEY - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
 
DatasetConstituentPager - Class in org.gbif.api.util.iterables
Iterates over all dataset constituents of a given super dataset.
DatasetConstituentPager(DatasetService, UUID, int) - Constructor for class org.gbif.api.util.iterables.DatasetConstituentPager
 
datasetKey(UUID) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
DatasetKey - Class in org.gbif.api.util
A typed dataset key for both registered and external datasets.
DatasetKey(UUID) - Constructor for class org.gbif.api.util.DatasetKey
Constructor for a registered dataset key.
DatasetKey(UUID, String) - Constructor for class org.gbif.api.util.DatasetKey
Constructor for an external dataset key.
DatasetMetrics - Class in org.gbif.api.model.checklistbank
Simple metrics about a single, processed checklist dataset in time.
DatasetMetrics() - Constructor for class org.gbif.api.model.checklistbank.DatasetMetrics
 
DatasetMetricsService - Interface in org.gbif.api.service.checklistbank
 
DatasetOccurrenceDownloadUsage - Class in org.gbif.api.model.registry
Represents the information about the usage of one dataset in an occurrence download.
DatasetOccurrenceDownloadUsage() - Constructor for class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
DatasetOccurrenceDownloadUsageService - Interface in org.gbif.api.service.registry
Interface to access and persists information about occurrence download events.
DatasetPager - Class in org.gbif.api.util.iterables
Pages through all datasets filtering by type only.
DatasetPager(DatasetService, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.DatasetPager
 
DatasetProcessService - Interface in org.gbif.api.service.crawler
This service exposes information regarding the crawling process and is not intended to provide historical information at the moment.
DatasetProcessStatus - Class in org.gbif.api.model.crawler
Information about a dataset that is currently being processed.
DatasetProcessStatus() - Constructor for class org.gbif.api.model.crawler.DatasetProcessStatus
 
DatasetProcessStatus(DatasetProcessStatus.Builder) - Constructor for class org.gbif.api.model.crawler.DatasetProcessStatus
Builds a new object from the builder validating it in the process.
DatasetProcessStatus.Builder - Class in org.gbif.api.model.crawler
 
DatasetProcessStatusService - Interface in org.gbif.api.service.registry
Interface to access and persist information about dataset processing statuses.
datasets(UUID, DatasetType, DatasetService, OrganizationService, InstallationService, NetworkService, NodeService) - Static method in class org.gbif.api.util.iterables.Iterables
 
datasets(UUID, DatasetType, DatasetService, OrganizationService, InstallationService, NetworkService, NodeService, int) - Static method in class org.gbif.api.util.iterables.Iterables
Returns a dataset iterable by testing the given registry key first to see whether it is a dataset, organization or installation.
datasets(DatasetType, DatasetService) - Static method in class org.gbif.api.util.iterables.Iterables
 
DatasetSearchParameter - Enum in org.gbif.api.model.registry.search
Each value in the enum represents a possible facet for the Dataset search.
DatasetSearchRequest - Class in org.gbif.api.model.registry.search
A dataset specific search request with convenience methods to add facet filters.
DatasetSearchRequest() - Constructor for class org.gbif.api.model.registry.search.DatasetSearchRequest
 
DatasetSearchRequest(Pageable) - Constructor for class org.gbif.api.model.registry.search.DatasetSearchRequest
 
DatasetSearchRequest(long, int) - Constructor for class org.gbif.api.model.registry.search.DatasetSearchRequest
 
DatasetSearchResult - Class in org.gbif.api.model.registry.search
The dataset search model object for faceted and full text search.
DatasetSearchResult() - Constructor for class org.gbif.api.model.registry.search.DatasetSearchResult
 
DatasetSearchService - Interface in org.gbif.api.service.registry
Interface that provides search and suggest operations over Datasets.
DatasetService - Interface in org.gbif.api.service.registry
 
DatasetSubtype - Enum in org.gbif.api.vocabulary
Enumeration for all possible dataset subtypes.
DatasetSuggestRequest - Class in org.gbif.api.model.registry.search
A dataset specific suggest request.
DatasetSuggestRequest() - Constructor for class org.gbif.api.model.registry.search.DatasetSuggestRequest
 
DatasetSuggestResult - Class in org.gbif.api.model.registry.search
The dataset search model object for suggest searches of datasets.
DatasetSuggestResult() - Constructor for class org.gbif.api.model.registry.search.DatasetSuggestResult
 
DatasetType - Enum in org.gbif.api.vocabulary
Enumeration for all possible dataset types.
DateRange - Class in org.gbif.api.model.registry.eml.temporal
A period of time.
DateRange() - Constructor for class org.gbif.api.model.registry.eml.temporal.DateRange
 
DateRange(Date, Date) - Constructor for class org.gbif.api.model.registry.eml.temporal.DateRange
 
DcElement - Enum in org.gbif.dwc.terms
All Dublin Core terms with namespace http://purl.org/dc/elements/1.1/.
DcTerm - Enum in org.gbif.dwc.terms
All Dublin Core terms with namespace http://purl.org/dc/terms/.
declaredCount(Long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
decodeUtf8Garbage(String) - Static method in class org.gbif.utils.text.StringUtils
Tries to decode a UTF8 string only if common UTF8 character combinations are found which are unlikely to be correctly encoded text.
decompose(String) - Static method in class org.gbif.api.util.UnicodeUtils
Replaces all digraphs and ligatures with their underlying 2 latin letters.
decompressFile(File) - Static method in class org.gbif.utils.file.CompressionUtil
Tries to decompress a file into a newly created temporary directory, trying gzip or zip regardless of the filename or its suffix.
decompressFile(File, File) - Static method in class org.gbif.utils.file.CompressionUtil
Defaults keeping subDirectories to false.
decompressFile(File, File, boolean) - Static method in class org.gbif.utils.file.CompressionUtil
Tries to decompress a file trying gzip or zip regardless of the filename or its suffix.
DEFAULT_PARAM_LIMIT - Static variable in class org.gbif.api.model.common.paging.PagingConstants
Default number of records to return.
DEFAULT_PARAM_OFFSET - Static variable in class org.gbif.api.model.common.paging.PagingConstants
Default start index in a result list of elements.
DEFAULT_SUGGEST_LIMIT - Static variable in class org.gbif.api.model.common.search.SearchConstants
Default limit value for auto-suggest services.
delete(K) - Method in interface org.gbif.api.service.common.CrudService
Deletes the entity.
delete(UUID) - Method in interface org.gbif.api.service.registry.NetworkEntityService
 
deleteComment(UUID, int) - Method in interface org.gbif.api.service.registry.CommentService
 
deleteContact(UUID, int) - Method in interface org.gbif.api.service.registry.ContactService
 
deleteDirectoryRecursively(File) - Static method in class org.gbif.utils.file.FileUtils
Delete directory recursively, including all its files, sub-folders, and sub-folder's files.
deleteEndpoint(UUID, int) - Method in interface org.gbif.api.service.registry.EndpointService
 
deleteIdentifier(UUID, int) - Method in interface org.gbif.api.service.registry.IdentifierService
 
deleteMachineTag(UUID, int) - Method in interface org.gbif.api.service.registry.MachineTagService
 
deleteMachineTags(UUID, String) - Method in interface org.gbif.api.service.registry.MachineTagService
 
deleteMachineTags(UUID, String, String) - Method in interface org.gbif.api.service.registry.MachineTagService
 
deleteMetadata(int) - Method in interface org.gbif.api.service.registry.DatasetService
Removes a metadata entry and its document by its key.
deleteTag(UUID, int) - Method in interface org.gbif.api.service.registry.TagService
 
delimiter - Variable in class org.gbif.utils.file.csv.CSVReader
 
Description - Class in org.gbif.api.model.checklistbank
Description Model Object represents a taxon description.
Description() - Constructor for class org.gbif.api.model.checklistbank.Description
 
DescriptionService - Interface in org.gbif.api.service.checklistbank
Service interface for Description Interface methods.
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.ExtensionDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.LicenseSerde.LicenseJsonDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.MapEntrySerde.MapEntryJsonDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.RankSerde.RankJsonDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.jackson.TermMapListDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.model.common.DOI.Deserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.vocabulary.Country.IsoDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.vocabulary.Country.TitleDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.api.vocabulary.Language.LenientDeserializer
 
deserialize(JsonParser, DeserializationContext) - Method in class org.gbif.dwc.terms.jackson.TermDeserializer
 
deserializeKey(String, DeserializationContext) - Method in class org.gbif.api.jackson.ExtensionKeyDeserializer
 
deserializeKey(String, DeserializationContext) - Method in class org.gbif.dwc.terms.jackson.TermKeyDeserializer
 
Deserializer() - Constructor for class org.gbif.api.model.common.DOI.Deserializer
 
detectEncoding(File) - Static method in class org.gbif.utils.file.CharsetDetection
 
detectEncoding(File, int) - Static method in class org.gbif.utils.file.CharsetDetection
 
detectEncoding() - Method in class org.gbif.utils.file.CharsetDetection
Guess the encoding of the provided buffer.
dictionaryUrl(String) - Static method in class org.gbif.utils.rs.RsGbifOrg
 
Dimension<T> - Class in org.gbif.api.model.metrics.cube
A typed dimension to a cube, which is constructed with a unique key.
Dimension(String, Class<T>) - Constructor for class org.gbif.api.model.metrics.cube.Dimension
Force the provision of the key in construction, which should be unique for the cube.
Dimension() - Constructor for class org.gbif.api.model.metrics.cube.Dimension
Prefer use of the constructor taking the parameters over this method.
DIMENSIONS - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
 
DirectExecutor - Class in org.gbif.utils.concurrent
Executor that runs tasks syncroneously and immediately.
DirectExecutor() - Constructor for class org.gbif.utils.concurrent.DirectExecutor
 
DisjunctionPredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate is "OR"-ing its subpredicates together.
DisjunctionPredicate(Collection<Predicate>) - Constructor for class org.gbif.api.model.occurrence.predicate.DisjunctionPredicate
 
Distribution - Class in org.gbif.api.model.checklistbank
Distribution Model Object represents a species distribution.
Distribution() - Constructor for class org.gbif.api.model.checklistbank.Distribution
 
DistributionService - Interface in org.gbif.api.service.checklistbank
Service interface for Distribution Interface methods.
DOI - Class in org.gbif.api.model.common
Class representing a single Digital Object Identifier (DOI) breaking it down to a prefix and suffix.
DOI() - Constructor for class org.gbif.api.model.common.DOI
Do not use this constructor.
DOI(String) - Constructor for class org.gbif.api.model.common.DOI
Parses a simple DOI string of various forms incl URN, URL or plain DOI names.
DOI(String, String) - Constructor for class org.gbif.api.model.common.DOI
Parses a simple DOI string of various forms incl URN, URL or plain DOI names.
DOI.Deserializer - Class in org.gbif.api.model.common
Deserializes a DOI from various string based formats.
DOI.Serializer - Class in org.gbif.api.model.common
Serializes a DOI as doi name with a doi: scheme.
DoiData - Class in org.gbif.api.model.common
Data about a DOI with a target URI and a status enumeration.
DoiData(DoiStatus, URI) - Constructor for class org.gbif.api.model.common.DoiData
 
DoiData(String, URI) - Constructor for class org.gbif.api.model.common.DoiData
 
DoiStatus - Enum in org.gbif.api.model.common
This enumeration represents the status of a DOI identifier.
DOMAIN - Static variable in class org.gbif.utils.rs.RsGbifOrg
 
Download - Class in org.gbif.api.model.occurrence
 
Download() - Constructor for class org.gbif.api.model.occurrence.Download
 
Download.Status - Enum in org.gbif.api.model.occurrence
Reflects the possibles statuses of a download during its execution.
DownloadFormat - Enum in org.gbif.api.model.occurrence
Download output requested format.
DownloadRequest - Class in org.gbif.api.model.occurrence
Represents a request to download occurrence records.
DownloadRequest() - Constructor for class org.gbif.api.model.occurrence.DownloadRequest
Default constructor.
DownloadRequest(Predicate, String, Collection<String>, boolean, DownloadFormat) - Constructor for class org.gbif.api.model.occurrence.DownloadRequest
Full constructor.
DownloadRequestService - Interface in org.gbif.api.service.occurrence
Provides services to manage download requests and retrieve the download file.
dump() - Method in class org.gbif.utils.collection.CompactHashSet
INTERNAL: Used for debugging only.
DWC_RANKS - Static variable in enum org.gbif.api.vocabulary.Rank
An ordered list of all ranks that appear in Darwin Core with their own term.
DwcaValidationReport - Class in org.gbif.api.model.crawler
A report of the validity of a DwC-A.
DwcaValidationReport(UUID, OccurrenceValidationReport, GenericValidationReport, String) - Constructor for class org.gbif.api.model.crawler.DwcaValidationReport
 
DwcaValidationReport(UUID, OccurrenceValidationReport) - Constructor for class org.gbif.api.model.crawler.DwcaValidationReport
 
DwcaValidationReport(UUID, GenericValidationReport) - Constructor for class org.gbif.api.model.crawler.DwcaValidationReport
 
DwcaValidationReport(UUID, String) - Constructor for class org.gbif.api.model.crawler.DwcaValidationReport
 
DwcModule - Class in org.gbif.dwc.terms.jackson
 
DwcModule() - Constructor for class org.gbif.dwc.terms.jackson.DwcModule
 
DwcTerm - Enum in org.gbif.dwc.terms
All Darwin Core terms with namespace http://rs.tdwg.org/dwc/terms/ as an enumeration with alternative term names found sometimes in data.

E

email - Variable in class org.gbif.utils.text.EmailUtils.EmailWithName
 
EmailUtils - Class in org.gbif.utils.text
 
EmailUtils.EmailWithName - Class in org.gbif.utils.text
 
EmailWithName() - Constructor for class org.gbif.utils.text.EmailUtils.EmailWithName
 
emptyLowerCase(String) - Static method in class org.gbif.utils.text.StringUtils
Returns an empty string or the trimmed lower case version of any input, but never NULL.
encoding - Variable in class org.gbif.utils.file.csv.CSVReader
 
endorsedDatasets(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NodeService
Provides paging service to list datasets published, i.e.
endorsedDatasets(UUID, DatasetType, NodeService) - Static method in class org.gbif.api.util.iterables.Iterables
 
endorsedOrganizations(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NodeService
Provides access to the organizations endorsed by a single node.
endorsedOrganizations(UUID, NodeService) - Static method in class org.gbif.api.util.iterables.Iterables
 
Endpoint - Class in org.gbif.api.model.registry
 
Endpoint() - Constructor for class org.gbif.api.model.registry.Endpoint
 
Endpointable - Interface in org.gbif.api.model.registry
Generic endpoint interface for entities.
EndpointService - Interface in org.gbif.api.service.registry
 
EndpointType - Enum in org.gbif.api.vocabulary
Enumeration for all endpoint types.
EolReferenceTerm - Enum in org.gbif.dwc.terms
EOL terms taken from http://eol.org/schema/reference_extension.xml
equals(Object) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.Description
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.Distribution
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.ParsedName
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.Reference
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.TableOfContents
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
 
equals(Object) - Method in class org.gbif.api.model.checklistbank.VernacularName
 
equals(Object) - Method in class org.gbif.api.model.common.AbstractGbifUser
 
equals(Object) - Method in class org.gbif.api.model.common.DOI
 
equals(Object) - Method in class org.gbif.api.model.common.DoiData
 
equals(Object) - Method in class org.gbif.api.model.common.GbifUser
 
equals(Object) - Method in class org.gbif.api.model.common.Identifier
 
equals(Object) - Method in class org.gbif.api.model.common.InterpretedField
Deprecated.
 
equals(Object) - Method in class org.gbif.api.model.common.MediaObject
 
equals(Object) - Method in class org.gbif.api.model.common.paging.PagingResponse
 
equals(Object) - Method in class org.gbif.api.model.common.search.Facet.Count
 
equals(Object) - Method in class org.gbif.api.model.common.search.Facet
 
equals(Object) - Method in class org.gbif.api.model.common.search.SearchResponse
 
equals(Object) - Method in class org.gbif.api.model.common.search.SpellCheckResponse
 
equals(Object) - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
 
equals(Object) - Method in class org.gbif.api.model.common.User
Deprecated.
 
equals(Object) - Method in class org.gbif.api.model.crawler.CrawlJob
 
equals(Object) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
equals(Object) - Method in class org.gbif.api.model.crawler.DwcaValidationReport
 
equals(Object) - Method in class org.gbif.api.model.crawler.GenericValidationReport
 
equals(Object) - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
equals(Object) - Method in class org.gbif.api.model.metrics.cube.Dimension
 
equals(Object) - Method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
equals(Object) - Method in class org.gbif.api.model.occurrence.Download
 
equals(Object) - Method in class org.gbif.api.model.occurrence.DownloadRequest
 
equals(Object) - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
equals(Object) - Method in class org.gbif.api.model.occurrence.Occurrence
 
equals(Object) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.CompoundPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.ConjunctionPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.DisjunctionPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.EqualsPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.GreaterThanOrEqualsPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.GreaterThanPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.InPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.LessThanOrEqualsPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.LessThanPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.LikePredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.NotPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.predicate.WithinPredicate
 
equals(Object) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
equals(Object) - Method in class org.gbif.api.model.registry.Citation
 
equals(Object) - Method in class org.gbif.api.model.registry.Comment
 
equals(Object) - Method in class org.gbif.api.model.registry.Contact
 
equals(Object) - Method in class org.gbif.api.model.registry.Dataset
 
equals(Object) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.Collection
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.DataDescription
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.KeywordCollection
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.Project
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.SamplingDescription
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
 
equals(Object) - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
 
equals(Object) - Method in class org.gbif.api.model.registry.Endpoint
 
equals(Object) - Method in class org.gbif.api.model.registry.Identifier
 
equals(Object) - Method in class org.gbif.api.model.registry.Installation
 
equals(Object) - Method in class org.gbif.api.model.registry.MachineTag
 
equals(Object) - Method in class org.gbif.api.model.registry.Metadata
 
equals(Object) - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
 
equals(Object) - Method in class org.gbif.api.model.registry.Network
 
equals(Object) - Method in class org.gbif.api.model.registry.Node
 
equals(Object) - Method in class org.gbif.api.model.registry.Organization
 
equals(Object) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
equals(Object) - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
 
equals(Object) - Method in class org.gbif.api.model.registry.search.KeyTitleResult
 
equals(Object) - Method in class org.gbif.api.model.registry.Tag
 
equals(Object) - Method in class org.gbif.dwc.terms.UnknownTerm
 
EqualsPredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate checks if its key is equal to its value.
EqualsPredicate(OccurrenceSearchParameter, String) - Constructor for class org.gbif.api.model.occurrence.predicate.EqualsPredicate
 
errorType(ProcessingErrorType) - Method in class org.gbif.api.model.metrics.RecordError.Builder
Deprecated.
 
escapeFilename(String) - Static method in class org.gbif.utils.file.FileUtils
Escapes a filename so it is a valid filename on all systems, replacing /.
EstablishmentMeans - Enum in org.gbif.api.vocabulary
Vocabulary for the establishment means of a species.
execute(Runnable) - Method in class org.gbif.utils.concurrent.DirectExecutor
 
EXECUTING_STATUSES - Static variable in enum org.gbif.api.model.occurrence.Download.Status
Statuses that represent a download that that hasn't finished.
ExecutorUtils - Class in org.gbif.utils.concurrent
 
ExecutorUtils() - Constructor for class org.gbif.utils.concurrent.ExecutorUtils
 
ExtendedPrincipal - Interface in org.gbif.api.model.common
Simply an extension of Principal to add the possibility to check roles.
Extension - Enum in org.gbif.api.vocabulary
Enumeration of dwc extensions for both Occurrence and Taxon that are indexed by GBIF.
ExtensionDeserializer - Class in org.gbif.api.jackson
 
ExtensionDeserializer() - Constructor for class org.gbif.api.jackson.ExtensionDeserializer
 
ExtensionKeyDeserializer - Class in org.gbif.api.jackson
Deserializer for Extension in key values.
ExtensionKeyDeserializer() - Constructor for class org.gbif.api.jackson.ExtensionKeyDeserializer
 
ExtensionSerializer - Class in org.gbif.api.jackson
 
ExtensionSerializer() - Constructor for class org.gbif.api.jackson.ExtensionSerializer
 
extractCsvMetadata(File, String) - Static method in class org.gbif.utils.file.csv.CSVReaderFactory
Replaced by TabularFileMetadataExtractor Extract metadata from a CSV file.
extractTabularFileMetadata(Path) - Static method in class org.gbif.utils.file.tabular.TabularFileMetadataExtractor
Extract metadata from a tabular file using a sample (defined by TabularFileMetadataExtractor.MAX_SAMPLE_SIZE) of the file.

F

Facet<T extends SearchParameter> - Class in org.gbif.api.model.common.search
Represents a clustering of search results into categories.
Facet() - Constructor for class org.gbif.api.model.common.search.Facet
Null/Empty constructor.
Facet(T) - Constructor for class org.gbif.api.model.common.search.Facet
Minimal constructor.
Facet(T, List<Facet.Count>) - Constructor for class org.gbif.api.model.common.search.Facet
Full constructor.
Facet.Count - Class in org.gbif.api.model.common.search
Nested class that represents the count of each category.
FacetedSearchRequest<P extends SearchParameter> - Class in org.gbif.api.model.common.search
Generic request class for search operations requesting facets.
FacetedSearchRequest() - Constructor for class org.gbif.api.model.common.search.FacetedSearchRequest
 
FacetedSearchRequest(Pageable) - Constructor for class org.gbif.api.model.common.search.FacetedSearchRequest
 
FacetedSearchRequest(SearchRequest<P>) - Constructor for class org.gbif.api.model.common.search.FacetedSearchRequest
 
FacetedSearchRequest(long, int) - Constructor for class org.gbif.api.model.common.search.FacetedSearchRequest
 
FactOrMeasurment - Class in org.gbif.api.model.occurrence
A fact or measurement about an occurrence.
FactOrMeasurment() - Constructor for class org.gbif.api.model.occurrence.FactOrMeasurment
 
FILENAME_AUTHORS - Static variable in class org.gbif.utils.rs.RsGbifOrg
 
FILENAME_BLACKLIST - Static variable in class org.gbif.utils.rs.RsGbifOrg
 
FILENAME_EPITHETA - Static variable in class org.gbif.utils.rs.RsGbifOrg
 
FILENAME_EPITHETA_AMIGOUS - Static variable in class org.gbif.utils.rs.RsGbifOrg
 
FILENAME_GENERA - Static variable in class org.gbif.utils.rs.RsGbifOrg
 
FILENAME_GENERA_AMIGOUS - Static variable in class org.gbif.utils.rs.RsGbifOrg
 
FILENAME_SUPRAGENERIC - Static variable in class org.gbif.utils.rs.RsGbifOrg
 
FileSplitter - Class in org.gbif.utils.file
A utility to split files into chucks.
FileUtils - Class in org.gbif.utils.file
Collection of file utils.
FileUtils() - Constructor for class org.gbif.utils.file.FileUtils
 
filter(List<T>, String, String, String) - Static method in class org.gbif.api.util.MachineTagUtils
Returns a copy of the original list of machine taggable entities, that have the machine tag.
filterProperties(Properties, String) - Static method in class org.gbif.utils.file.properties.PropertiesUtil
Filters and translates Properties with a prefix.
findTerm(String) - Method in class org.gbif.dwc.terms.TermFactory
This is the main method to get a term from the factory.
FINISH_STATUSES - Static variable in enum org.gbif.api.model.occurrence.Download.Status
Statuses that represent a download that that has finished.
finishedCrawling(Date) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
finishReason(FinishReason) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
FinishReason - Enum in org.gbif.api.model.crawler
This enum lists the reasons why a crawl is finished.
firstTag(MachineTaggable, TagName) - Static method in class org.gbif.api.util.MachineTagUtils
 
firstTag(MachineTaggable, String, String) - Static method in class org.gbif.api.util.MachineTagUtils
 
foldToAscii(String) - Static method in class org.gbif.utils.text.StringUtils
Removes accents & diacretics and converts ligatures into several chars
format(DateRange) - Method in interface org.gbif.api.util.formatter.TemporalCoverageFormatterVisitor
 
format(SingleDate) - Method in interface org.gbif.api.util.formatter.TemporalCoverageFormatterVisitor
 
format(VerbatimTimePeriod) - Method in interface org.gbif.api.util.formatter.TemporalCoverageFormatterVisitor
 
fragmentsEmitted(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
fragmentsProcessed(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
fragmentsReceived(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
fromDouble(Double, boolean) - Static method in class org.gbif.utils.number.BigDecimalUtils
Convert a double to a BigDecimal.
fromIsoCode(String) - Static method in enum org.gbif.api.vocabulary.Country
 
fromIsoCode(String) - Static method in enum org.gbif.api.vocabulary.Language
 
fromLicenseUrl(String) - Static method in enum org.gbif.api.vocabulary.License
FIXME returning Guava Optional will cause issues, Java 8 Optional should be returned.
fromResponse(Response<?>) - Method in class org.gbif.api.model.common.messaging.Response.Builder
Creates an builder using/copying a response object.
fromRowType(String) - Static method in enum org.gbif.api.vocabulary.Extension
 
fromString(String) - Static method in enum org.gbif.api.model.common.DoiStatus
 
fromString(String) - Static method in class org.gbif.api.util.DatasetKey
Parses a datasetKey which can be either a compound external key or a simple UUID for registered datasets.
fromString(String) - Static method in enum org.gbif.api.vocabulary.ContactType
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.Continent
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.DatasetSubtype
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.DatasetType
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.EndpointType
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.GbifRegion
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.IdentifierType
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.InstallationType
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.License
FIXME returning Guava Optional will cause issues, Java 8 Optional should be returned.
fromString(String) - Static method in enum org.gbif.api.vocabulary.MaintenanceUpdateFrequency
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.MetadataType
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.NamePart
Case insensitive lookup of a NamePart by its name that does not throw an exception but returns null for a not found NamePart.
fromString(String) - Static method in enum org.gbif.api.vocabulary.NameType
Case insensitive lookup of a name type by its name that does not throw an exception but returns null for not found name types.
fromString(String) - Static method in enum org.gbif.api.vocabulary.NodeType
 
fromString(String) - Static method in enum org.gbif.api.vocabulary.NomenclaturalStatus
Deprecated.
use NomStatusParser instead
fromString(String) - Static method in enum org.gbif.api.vocabulary.Origin
Case insensitive lookup of an Origin by its name that does not throw an exception but returns null for not found origins.
fromString(String) - Static method in enum org.gbif.api.vocabulary.ParticipationStatus
 
fullName() - Method in class org.gbif.api.model.checklistbank.ParsedName
 

G

GBIF_PREFIX - Static variable in class org.gbif.api.model.common.DOI
The DOI prefix registered with DataCite to be used by GBIF issued production DOIs.
GbifInternalTerm - Enum in org.gbif.dwc.terms
Internal GBIF terms used for processing, fragmenting, crawling, ...
GbifRegion - Enum in org.gbif.api.vocabulary
Enumeration for all GBIF's regions.
GbifTerm - Enum in org.gbif.dwc.terms
 
GbifUser - Class in org.gbif.api.model.common
A GBIF user account registered in the user Identity database (previously Drupal).
GbifUser() - Constructor for class org.gbif.api.model.common.GbifUser
 
GbifUserPrincipal - Class in org.gbif.api.model.common
A wrapper class for a GBIF User that exposes the unique account name as the principal name.
GbifUserPrincipal(GbifUser) - Constructor for class org.gbif.api.model.common.GbifUserPrincipal
 
GenericValidationReport - Class in org.gbif.api.model.crawler
A container class used to capture the information necessary for a generic validation report.
GenericValidationReport(int, boolean, List<String>, List<Integer>) - Constructor for class org.gbif.api.model.crawler.GenericValidationReport
 
GEO_DATUM - Static variable in class org.gbif.api.model.occurrence.Occurrence
 
Geometry - Interface in org.gbif.api.model.registry.eml.geospatial
General interface for all geometries such as polygons or bounding boxes.
GEOSPATIAL_RULES - Static variable in enum org.gbif.api.vocabulary.OccurrenceIssue
All issues that indicate problems with the coordinates and thus should not be shown on maps.
GeospatialCoverage - Class in org.gbif.api.model.registry.eml.geospatial
 
GeospatialCoverage() - Constructor for class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
 
GeospatialCoverage(String, BoundingBox) - Constructor for class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
 
get(UUID) - Method in interface org.gbif.api.service.checklistbank.DatasetMetricsService
 
get(int) - Method in interface org.gbif.api.service.checklistbank.DescriptionService
Retrieve a description by its key.
get(int, Locale) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Attempt to find a name usage matching the passed key.
get(int) - Method in interface org.gbif.api.service.checklistbank.ParsedNameService
Retrieves a parsed name by its name key.
get(K) - Method in interface org.gbif.api.service.common.CrudService
Get an entity by its unique key.
get(String) - Method in interface org.gbif.api.service.common.IdentityAccessService
Get a GbifUser by identifier (username or email).
get(String) - Method in interface org.gbif.api.service.common.UserService
Deprecated.
Retrieves a user by its case insensitive username.
get(ReadBuilder) - Method in interface org.gbif.api.service.metrics.CubeService
Using the supplied ReadBuilder to obtain the address, looks up the cube value.
get(Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceService
Attempt to find an occurrence matching the passed key.
get(UUID) - Method in interface org.gbif.api.service.registry.NetworkEntityService
 
get(String) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService
Retrieves a occurrence download by its unique key.
getAbbreviatedLabel() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus
The abbreviated status name, often used in botany.
getAbbreviation() - Method in class org.gbif.api.model.registry.Dataset
TODO: Document what this is TODO: are both alias & abbreviation needed?
getAbbreviation() - Method in class org.gbif.api.model.registry.Node
 
getAbbreviation() - Method in class org.gbif.api.model.registry.Organization
 
getAccepted() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getAccepted() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getAcceptedKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getAcceptedKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getAccordingTo() - Method in class org.gbif.api.model.checklistbank.NameUsage
The taxon concept reference usually a reference to some publication or author + year.
getAccordingTo() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getAccordingTo() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
getAccuracy() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
getAcronym() - Method in enum org.gbif.api.vocabulary.NomenclaturalCode
 
getAdditionalInfo() - Method in class org.gbif.api.model.registry.Dataset
 
getAddress() - Method in interface org.gbif.api.model.registry.Address
deliveryPoint in EML
getAddress() - Method in class org.gbif.api.model.registry.Contact
 
getAddress() - Method in class org.gbif.api.model.registry.Network
 
getAddress() - Method in class org.gbif.api.model.registry.Node
 
getAddress() - Method in class org.gbif.api.model.registry.Organization
 
getAgeInDays() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
Maximum observed age of an organism given as number of days.
getAlias() - Method in class org.gbif.api.model.registry.Dataset
TODO: Document what this is
getAlternatives() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getAlternatives() - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
 
getAppendixCites() - Method in class org.gbif.api.model.checklistbank.Distribution
The CITES (Convention on International Trade in Endangered Species of Wild Fauna and Flora) Appendix number the taxa is listed.
getArea() - Method in class org.gbif.api.model.checklistbank.VernacularName
The area for the vernacular name.
getAttempt() - Method in class org.gbif.api.model.crawler.CrawlJob
 
getAudience() - Method in class org.gbif.api.model.common.MediaObject
 
getAuthor() - Method in class org.gbif.api.model.checklistbank.Reference
Deprecated.
getAuthorship() - Method in class org.gbif.api.model.checklistbank.NameUsage
Returns the authorship information for the scientific name.
getAuthorship() - Method in class org.gbif.api.model.checklistbank.ParsedName
The original author of this name, e.g basionym or recombination author
getAuthorship() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getBasionym() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getBasionym() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getBasionymKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
Returns the earlier name (basionym) for this scientific name.
getBasionymKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getBasisOfRecord() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getBasisOfRecordCounts() - Method in interface org.gbif.api.service.occurrence.OccurrenceDistributionIndexService
Returns the occurrence records count by basis of record.
getBibliographicCitations() - Method in class org.gbif.api.model.registry.Dataset
 
getBoundingBox() - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
 
getBracketAuthorship() - Method in class org.gbif.api.model.checklistbank.ParsedName
The authorship of the original name, i.e.
getBracketYear() - Method in class org.gbif.api.model.checklistbank.ParsedName
The code relevant year of publication of the original name, i.e.
getBracketYearInt() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
getByCountry(Country) - Method in interface org.gbif.api.service.registry.NodeService
Returns a node for a given country.
getBySession(String) - Method in interface org.gbif.api.service.common.UserService
Deprecated.
Retrieves a user by a currently open Drupal (login) session.
getCanonicalName() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getCanonicalName() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getCanonicalName() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getCanonicalName() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getCanonicalOrScientificName() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getCatalogNumber() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getCatalogNumber() - Method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
getCharset() - Method in class org.gbif.api.model.registry.eml.DataDescription
The name of the character encoding.
getCheckedRecords() - Method in class org.gbif.api.model.crawler.GenericValidationReport
 
getCheckedRecords() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
getCitation() - Method in class org.gbif.api.model.checklistbank.Reference
A text string referring to an un-parsed bibliographic citation.
getCitation() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getCitation() - Method in class org.gbif.api.model.registry.Dataset
The exact form of how to cite this dataset.
getCity() - Method in interface org.gbif.api.model.registry.Address
city in EML
getCity() - Method in class org.gbif.api.model.registry.Contact
 
getCity() - Method in class org.gbif.api.model.registry.Network
 
getCity() - Method in class org.gbif.api.model.registry.Node
 
getCity() - Method in class org.gbif.api.model.registry.Organization
 
getClassKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getClassKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getClassKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getClassKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getClassKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
Return the class key for this usage.
getClassKey() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getClasspathFile(String) - Static method in class org.gbif.utils.file.FileUtils
 
getClazz() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getClazz() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getClazz() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getClazz() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getClazz() - Method in interface org.gbif.api.model.common.LinneanClassification
Return the class for this usage.
getClazz() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getCode() - Method in enum org.gbif.api.model.common.messaging.Response.StatusCode
 
getCode() - Method in enum org.gbif.api.vocabulary.ThreatStatus
 
getColCoveragePct() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getCollectionCode() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getCollectionCode() - Method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
getCollections() - Method in class org.gbif.api.model.registry.Dataset
 
getColMatchingCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getColumnComparator() - Method in class org.gbif.utils.text.LineComparator
 
getCombinations() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getComments() - Method in interface org.gbif.api.model.registry.Commentable
 
getComments() - Method in class org.gbif.api.model.registry.Dataset
 
getComments() - Method in class org.gbif.api.model.registry.Installation
 
getComments() - Method in class org.gbif.api.model.registry.Network
 
getComments() - Method in class org.gbif.api.model.registry.Node
 
getComments() - Method in class org.gbif.api.model.registry.Organization
 
getCommonName() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
 
getConfidence() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
The confidence that the lookup was correct.
getConfirmationKey() - Method in class org.gbif.api.model.registry.ConfirmationKeyParameter
 
getConstituentKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
Return the optional sub dataset key for this usage.
getConstituentKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getContacts() - Method in interface org.gbif.api.model.registry.Contactable
 
getContacts() - Method in class org.gbif.api.model.registry.Dataset
 
getContacts() - Method in class org.gbif.api.model.registry.eml.Project
 
getContacts() - Method in class org.gbif.api.model.registry.Installation
 
getContacts() - Method in class org.gbif.api.model.registry.Network
 
getContacts() - Method in class org.gbif.api.model.registry.Node
 
getContacts() - Method in class org.gbif.api.model.registry.Organization
 
getContent() - Method in class org.gbif.api.model.common.messaging.Request
 
getContent() - Method in class org.gbif.api.model.common.messaging.Response
 
getContent() - Method in class org.gbif.api.model.registry.Comment
 
getContent() - Method in class org.gbif.api.model.registry.Metadata
 
getContext() - Method in class org.gbif.api.model.common.messaging.Request
Context contains additional request parameters.
getContinent() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getContinent() - Method in class org.gbif.api.model.registry.Node
 
getContinent() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
Currently not populated.
getContributor() - Method in class org.gbif.api.model.checklistbank.Description
An entity responsible for making contributions to the textual information provided for a description.
getContributor() - Method in class org.gbif.api.model.common.MediaObject
 
getCoordinateAccuracy() - Method in class org.gbif.api.model.occurrence.Occurrence
Deprecated.
getCoordinatePrecision() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getCoordinateUncertaintyInMeters() - Method in class org.gbif.api.model.occurrence.Occurrence
The uncertainty radius for lat/lon in meters.
getCoreField(Term) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
Get the value of a specific field (Term).
getCount() - Method in class org.gbif.api.model.common.paging.PagingResponse
Gets the count of total results of search operation.
getCount() - Method in class org.gbif.api.model.common.search.Facet.Count
Number of occurrences of the category(name).
getCount() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
getCount() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
 
getCountByConstituent() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getCountByIssue() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getCountByIssue(NameUsageIssue) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
Get the metrics by name usage issue.
getCountByKingdom() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getCountByKingdom(Kingdom) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
For an occurrence dataset get the number of records that are interpreted to belong to a certain nub kingdom.
getCountByOrigin() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getCountByOrigin(Origin) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
Get the metrics by name usage origin.
getCountByRank() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getCountByRank(Rank) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
Get the metrics by taxonomic rank, i.e.
getCountExtRecordsByExtension() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getCountNamesByLanguage() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getCountNamesByLanguage(Language) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
Number of vernacular names in this checklist dataset by language.
getCountry() - Method in class org.gbif.api.model.checklistbank.Distribution
 
getCountry() - Method in class org.gbif.api.model.checklistbank.VernacularName
The standard code for the country in which the vernacular name is used.
getCountry() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getCountry() - Method in interface org.gbif.api.model.registry.Address
country in EML
getCountry() - Method in class org.gbif.api.model.registry.Contact
 
getCountry() - Method in class org.gbif.api.model.registry.Network
 
getCountry() - Method in class org.gbif.api.model.registry.Node
 
getCountry() - Method in class org.gbif.api.model.registry.Organization
 
getCountryCoverage() - Method in class org.gbif.api.model.registry.Dataset
 
getCountryCoverage() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
Currently not populated.
getCounts() - Method in class org.gbif.api.model.common.search.Facet
List of the different categories/count for this facet.
getCoverages() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
 
getCrawlContext() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
Last successful crawl context, this is a JSON string.
getCrawlId() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
Crawling attempt id.
getCrawlJob() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getCreated() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getCreated() - Method in class org.gbif.api.model.common.MediaObject
The date and time this media item was taken.
getCreated() - Method in class org.gbif.api.model.occurrence.Download
 
getCreated() - Method in class org.gbif.api.model.registry.Comment
 
getCreated() - Method in class org.gbif.api.model.registry.Contact
 
getCreated() - Method in class org.gbif.api.model.registry.Dataset
 
getCreated() - Method in class org.gbif.api.model.registry.Endpoint
 
getCreated() - Method in class org.gbif.api.model.registry.Identifier
 
getCreated() - Method in class org.gbif.api.model.registry.Installation
 
getCreated() - Method in class org.gbif.api.model.registry.MachineTag
 
getCreated() - Method in class org.gbif.api.model.registry.Metadata
 
getCreated() - Method in class org.gbif.api.model.registry.Network
 
getCreated() - Method in interface org.gbif.api.model.registry.NetworkEntity
 
getCreated() - Method in class org.gbif.api.model.registry.Node
 
getCreated() - Method in class org.gbif.api.model.registry.Organization
 
getCreated() - Method in class org.gbif.api.model.registry.Tag
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Comment
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Contact
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Dataset
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Endpoint
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Identifier
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Installation
 
getCreatedBy() - Method in class org.gbif.api.model.registry.MachineTag
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Metadata
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Network
 
getCreatedBy() - Method in interface org.gbif.api.model.registry.NetworkEntity
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Node
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Organization
 
getCreatedBy() - Method in class org.gbif.api.model.registry.Tag
 
getCreator() - Method in class org.gbif.api.model.checklistbank.Description
The author(s) of the textual information provided for a description.
getCreator() - Method in class org.gbif.api.model.common.MediaObject
The person that created the media item.
getCreator() - Method in class org.gbif.api.model.occurrence.DownloadRequest
 
getCultivarEpithet() - Method in class org.gbif.api.model.checklistbank.ParsedName
The cultivar, cultivar group or grex part of a cultivated plant name.
getCuratorialUnits() - Method in class org.gbif.api.model.registry.Dataset
 
getCuratorialUnits() - Method in class org.gbif.api.model.registry.eml.Collection
The quantitative descriptor (number of specimens, samples or batches).
getDataDescriptions() - Method in class org.gbif.api.model.registry.Dataset
 
getDataLanguage() - Method in class org.gbif.api.model.registry.Dataset
 
getDatasetCitation() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
Dataset citation at the moment when the download was created.
getDatasetDOI() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
Dataset DOI at the moment when the download was created.
getDatasetId() - Method in class org.gbif.api.util.DatasetKey
 
getDatasetKey() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getDatasetKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
Returns the key of the checklist that "hosts" this name usage.
getDatasetKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getDatasetKey() - Method in class org.gbif.api.model.crawler.CrawlJob
 
getDatasetKey() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
Key that identifies the Dataset.
getDatasetKey() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
 
getDatasetKey() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
getDatasetKey() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
Dataset key.
getDatasetKey() - Method in class org.gbif.api.model.registry.Metadata
 
getDatasetProcessStatus(UUID) - Method in interface org.gbif.api.service.crawler.DatasetProcessService
Returns the processing status for a particular dataset identified by a UUID key.
getDatasetProcessStatus(UUID, int) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService
Retrieves a DatasetProcessStatus by its datasetKey and attempt.
getDatasetTitle() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
Dataset title at the moment when the download was created.
getDate() - Method in class org.gbif.api.model.checklistbank.Reference
Deprecated.
getDate() - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
 
getDateFormat() - Method in enum org.gbif.api.util.IsoDateParsingUtils.IsoDateFormat
 
getDateIdentified() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getDateSignedMOU() - Method in class org.gbif.api.model.registry.Node
 
getDay() - Method in class org.gbif.api.model.occurrence.Occurrence
The day of the month of the event date.
getDecades() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getDecimalLatitude() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getDecimalLongitude() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getDeclaredCount() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getDefaultSystemCharset() - Static method in class org.gbif.utils.file.CharsetDetection
Retrieve the default charset of the system.
getDeleted() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getDeleted() - Method in class org.gbif.api.model.common.AbstractGbifUser
 
getDeleted() - Method in class org.gbif.api.model.registry.Dataset
 
getDeleted() - Method in class org.gbif.api.model.registry.Installation
 
getDeleted() - Method in class org.gbif.api.model.registry.Network
 
getDeleted() - Method in interface org.gbif.api.model.registry.NetworkEntity
 
getDeleted() - Method in class org.gbif.api.model.registry.Node
 
getDeleted() - Method in class org.gbif.api.model.registry.Organization
 
getDelimiter() - Method in class org.gbif.utils.file.csv.CSVReaderFactory.CSVMetadata
 
getDelimiter() - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
 
getDelimiterChar(List<String>) - Static method in class org.gbif.utils.file.tabular.TabularFileMetadataExtractor
Given a sample of line, this method tries to determine the delimiter char used.
getDepth() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getDepthAccuracy() - Method in class org.gbif.api.model.occurrence.Occurrence
Depth accuracy is the uncertainty for the depth in meters.
getDescription() - Method in class org.gbif.api.model.checklistbank.Description
Any descriptive free text matching the category given as dc:type.
getDescription() - Method in class org.gbif.api.model.common.MediaObject
A longer description for this media item.
getDescription() - Method in class org.gbif.api.model.registry.Contact
 
getDescription() - Method in class org.gbif.api.model.registry.Dataset
 
getDescription() - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
 
getDescription() - Method in class org.gbif.api.model.registry.eml.Project
 
getDescription() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
 
getDescription() - Method in class org.gbif.api.model.registry.Endpoint
 
getDescription() - Method in class org.gbif.api.model.registry.Installation
 
getDescription() - Method in class org.gbif.api.model.registry.Network
 
getDescription() - Method in interface org.gbif.api.model.registry.NetworkEntity
 
getDescription() - Method in class org.gbif.api.model.registry.Node
 
getDescription() - Method in class org.gbif.api.model.registry.Organization
 
getDescription() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getDescription() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
 
getDescriptions() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getDescriptions() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getDesignDescription() - Method in class org.gbif.api.model.registry.eml.Project
 
getDetails() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
Details about the metasync operation.
getDeterminedBy() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
getDeterminedDate() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
getDeviation() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
getDeviation() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
 
getDimensions() - Method in class org.gbif.api.model.metrics.cube.Rollup
 
getDistinctNamesCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getDistributions() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getDoi() - Method in class org.gbif.api.model.checklistbank.Reference
The pure DOI for the publication without potential http resolver or URI prefix.
getDoi() - Method in class org.gbif.api.model.occurrence.Download
Occurrence download Digital Object Identifier.
getDoi() - Method in class org.gbif.api.model.registry.Dataset
 
getDoiName() - Method in class org.gbif.api.model.common.DOI
 
getDownload() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
getDownloaded() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getDownloadKey() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
Occurrence download key.
getDownloadLink() - Method in class org.gbif.api.model.occurrence.Download
 
getDuplicateIds() - Method in class org.gbif.api.model.crawler.GenericValidationReport
 
getDuplicateOfDatasetKey() - Method in class org.gbif.api.model.registry.Dataset
If a dataset is registered with GBIF through more than one place we'll mark all but one as a duplicate by pointing it to the canonical dataset.
getElevation() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getElevationAccuracy() - Method in class org.gbif.api.model.occurrence.Occurrence
Elevation accuracy is the uncertainty for the elevation in meters.
getEmail() - Method in class org.gbif.api.model.common.AbstractGbifUser
 
getEmail() - Method in class org.gbif.api.model.common.User
Deprecated.
 
getEmail() - Method in interface org.gbif.api.model.registry.Address
electronicMailAddress in EML
getEmail() - Method in class org.gbif.api.model.registry.Contact
 
getEmail() - Method in class org.gbif.api.model.registry.Network
 
getEmail() - Method in class org.gbif.api.model.registry.Node
 
getEmail() - Method in class org.gbif.api.model.registry.Organization
 
getEmptyLines() - Method in class org.gbif.utils.file.csv.CSVReader
 
getEncoding() - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
 
getEnd() - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
 
getEndDayOfYear() - Method in class org.gbif.api.model.checklistbank.Distribution
Seasonal temporal subcontext within the eventDate context.
getEndorsingNodeKey() - Method in class org.gbif.api.model.registry.Organization
 
getEndpoints() - Method in class org.gbif.api.model.registry.Dataset
 
getEndpoints() - Method in interface org.gbif.api.model.registry.Endpointable
 
getEndpoints() - Method in class org.gbif.api.model.registry.Installation
 
getEndpoints() - Method in class org.gbif.api.model.registry.Network
 
getEndpoints() - Method in class org.gbif.api.model.registry.Node
 
getEndpoints() - Method in class org.gbif.api.model.registry.Organization
 
getEndpointType() - Method in class org.gbif.api.model.crawler.CrawlJob
 
getErrorMessage() - Method in interface org.gbif.utils.file.ClosableReportingIterator
Return an informative message about the error encountered while iterating over row.
getErrorMessage() - Method in class org.gbif.utils.file.csv.CSVReader
 
getEstablishedDate() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
getEstablishmentMeans() - Method in class org.gbif.api.model.checklistbank.Distribution
Term describing whether the organism occurs natively, is introduced or cultivated.
getEstablishmentMeans() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getEventDate() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getException() - Method in interface org.gbif.utils.file.ClosableReportingIterator
Return the Exception encountered while iterating over row.
getException() - Method in class org.gbif.utils.file.csv.CSVReader
 
getExtensionRecordCount(Extension) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
Number of extension records found in the dataset.
getExtensions() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
A map of extension records, holding all verbatim extension terms.
getExtensions() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
A map holding all verbatim extension terms.
getEzid() - Method in enum org.gbif.api.model.common.DoiStatus
 
getFacetLimit() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
Page size of the facet request.
getFacetMinCount() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
Min count of facet to return, if the facet count is less than this number the facet won't be included.
getFacetOffset() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
Offset of the facet request.
getFacetPage(P) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
Gets the paging configuration of a facet parameter.
getFacetPages() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
Holds the paging configuration for each requested facet.
getFacets() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
Gets the list of requested facets by the search operation.
getFacets() - Method in class org.gbif.api.model.common.search.SearchResponse
Gets the resulting facets of a search operation, the list can be empty if no facets were requested.
getFacts() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getFamily() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getFamily() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getFamily() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getFamily() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getFamily() - Method in interface org.gbif.api.model.common.LinneanClassification
Return the family for this usage.
getFamily() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getFamilyKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getFamilyKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getFamilyKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getFamilyKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getFamilyKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
Return the family key for this usage.
getFamilyKey() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getField() - Method in class org.gbif.api.model.common.search.Facet
The facet field, it's used only for identify the facet in a possible list of facets.
getFields() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
A map holding all verbatim core terms.
getFinishedCrawling() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
Timestamp of when the crawl was finished.
getFinishReason() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
The reason a crawl is finished.
getFirstDateFormatMatch(String) - Static method in class org.gbif.api.util.IsoDateParsingUtils
Iterates over all the OccurrenceDateFormat's and returns the first one that parses successfully the value.
getFirstName() - Method in class org.gbif.api.model.common.AbstractGbifUser
 
getFirstName() - Method in class org.gbif.api.model.common.User
Deprecated.
 
getFirstName() - Method in class org.gbif.api.model.registry.Contact
 
getFormat() - Method in class org.gbif.api.model.common.MediaObject
 
getFormat() - Method in class org.gbif.api.model.occurrence.DownloadRequest
 
getFormat() - Method in class org.gbif.api.model.registry.eml.DataDescription
The name of the format of the data object, e.g., Microsoft Excel.
getFormatVersion() - Method in class org.gbif.api.model.registry.eml.DataDescription
The version of the format of the data object, e.g., 2000 (9.0.2720).
getFragment(int) - Method in interface org.gbif.api.service.occurrence.OccurrenceService
Returns the "fragment" of raw data (either xml response fragment or json dwca fragment) for the passed in key.
getFragmentsEmitted() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getFragmentsProcessed() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
Number of fragments that have been processed.
getFragmentsReceived() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getFullText() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getFunding() - Method in class org.gbif.api.model.registry.eml.Project
 
getGbifRegion() - Method in class org.gbif.api.model.registry.Node
 
getGbifRegion() - Method in enum org.gbif.api.vocabulary.Country
Get the GbifRegion associated with this Country.
getGenericName() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getGenericReport() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
 
getGenus() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getGenus() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getGenus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getGenus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getGenus() - Method in interface org.gbif.api.model.common.LinneanClassification
Return the genus for this usage.
getGenus() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getGenusKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getGenusKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getGenusKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getGenusKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getGenusKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
Return the genus key for this usage.
getGenusKey() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getGenusOrAbove() - Method in class org.gbif.api.model.checklistbank.ParsedName
The genus part of a bi/trinomial or the monomial in case of names of higher ranks
getGeodeticDatum() - Method in class org.gbif.api.model.occurrence.Occurrence
The geodetic datum for the interpreted decimal coordinates.
getGeographicCoverageDescription() - Method in class org.gbif.api.model.registry.Dataset
 
getGeographicCoverages() - Method in class org.gbif.api.model.registry.Dataset
 
getGeometry() - Method in class org.gbif.api.model.occurrence.predicate.WithinPredicate
 
getGroup() - Method in enum org.gbif.dwc.terms.DwcTerm
The optional group the term is grouped in.
getGroup() - Method in enum org.gbif.dwc.terms.GbifTerm
The optional group the term is grouped in.
getHabitat() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
Comma seperated list of mayor habitat classification as defined by IUCN in which a species is known to exist: http://www.iucnredlist.org/static/major_habitats
getHabitats() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
Convenience method that analyzes all species profile records and returns the distinct list of known habitats.
getHabitats() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getHeader() - Method in class org.gbif.utils.file.csv.CSVReader
Get the header, or null if none
getHeaderLine() - Method in interface org.gbif.utils.file.tabular.TabularDataFileReader
Get the header line of the tabular data file (if possible).
getHigherClassification(LinneanClassification) - Static method in class org.gbif.api.util.ClassificationUtils
Concatenates all higher Linnean taxa into a single dwc:higherClassification string, skipping null values.
getHigherClassificationMap() - Method in class org.gbif.api.model.checklistbank.NameUsage
An ordered map with entries for all higher Linnean ranks down to the actual direct parent of this usage.
getHigherClassificationMap() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
An ordered map with entries for all higher Linnean ranks down to the actual direct parent of this usage.
getHigherClassificationMap() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
An ordered map with entries for all higher Linnean ranks down to the actual direct parent of this usage.
getHigherClassificationMap() - Method in class org.gbif.api.model.occurrence.Occurrence
An ordered map with entries for all higher Linnean ranks excluding the taxonKey itself.
getHigherClassificationMap(T) - Static method in class org.gbif.api.util.ClassificationUtils
An ordered map with entries for all higher Linnean ranks down to species which are not null.
getHigherClassificationMap(T, int, Integer, String) - Static method in class org.gbif.api.util.ClassificationUtils
An ordered map with entries for all higher Linnean ranks down to the actual direct parent of this usage.
getHigherRank(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getHigherRank(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getHigherRank(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getHigherRank(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getHigherRank(Rank) - Method in interface org.gbif.api.model.common.LinneanClassification
Gets a higher taxon property by passing the rank of it.
getHigherRank(Rank) - Method in class org.gbif.api.model.occurrence.Occurrence
 
getHigherRank(LinneanClassification, Rank) - Static method in class org.gbif.api.util.ClassificationUtils
Gets a higher taxon property by passing the rank of it.
getHigherRankKey(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getHigherRankKey(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getHigherRankKey(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getHigherRankKey(Rank) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getHigherRankKey(Rank) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
Gets a higher taxon key by passing the rank of it.
getHigherRankKey(Rank) - Method in class org.gbif.api.model.occurrence.Occurrence
 
getHigherRankKey(LinneanClassificationKeys, Rank) - Static method in class org.gbif.api.util.ClassificationUtils
Gets a higher taxon key by passing the rank of it.
getHighlightContext() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
getHighlightContext() - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
 
getHighlightFields() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
Defines the fields to be highlighted if highlighting is activated.
getHomepage() - Method in interface org.gbif.api.model.registry.Address
List of homepage websites.
getHomepage() - Method in class org.gbif.api.model.registry.Contact
 
getHomepage() - Method in class org.gbif.api.model.registry.Dataset
 
getHomepage() - Method in class org.gbif.api.model.registry.Network
 
getHomepage() - Method in class org.gbif.api.model.registry.Node
 
getHomepage() - Method in class org.gbif.api.model.registry.Organization
 
getHostedDatasets(UUID, Pageable) - Method in interface org.gbif.api.service.registry.InstallationService
Provides paging service to list datasets hosted by a specific installation.
getHostingOrganizationKey() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getHostingOrganizationTitle() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getId() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
getId() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
getId() - Method in interface org.gbif.api.vocabulary.InterpretationRemark
Returns the identifier of the InterpretationRemark.
getId() - Method in enum org.gbif.api.vocabulary.NameUsageIssue
 
getId() - Method in enum org.gbif.api.vocabulary.OccurrenceIssue
 
getIdentifier() - Method in class org.gbif.api.model.common.Identifier
Other known identifier used for the same taxon.
getIdentifier() - Method in class org.gbif.api.model.common.MediaObject
The public URL that identifies and locates the media item.
getIdentifier() - Method in class org.gbif.api.model.registry.Citation
 
getIdentifier() - Method in class org.gbif.api.model.registry.eml.Collection
The URI (LSID or URL) of the collection.
getIdentifier() - Method in class org.gbif.api.model.registry.eml.Project
A unique identifier for the project.
getIdentifier() - Method in class org.gbif.api.model.registry.Identifier
 
getIdentifierByType(IdentifierType) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getIdentifierLink() - Method in class org.gbif.api.model.common.Identifier
Creates a http link for an identifier if possible by passing it to some known resolvers for the specific id type.
getIdentifierLink() - Method in class org.gbif.api.model.registry.Identifier
Creates a http link for an identifier if possible by passing it to some known resolvers for the specific id type.
getIdentifierLink(String, IdentifierType) - Static method in class org.gbif.api.util.IdentifierUtils
Creates a http link for an identifier if possible by passing it to some known resolvers for the specific id type.
getIdentifiers() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getIdentifiers() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getIdentifiers() - Method in class org.gbif.api.model.registry.Dataset
 
getIdentifiers() - Method in interface org.gbif.api.model.registry.Identifiable
 
getIdentifiers() - Method in class org.gbif.api.model.registry.Installation
 
getIdentifiers() - Method in class org.gbif.api.model.registry.Network
 
getIdentifiers() - Method in class org.gbif.api.model.registry.Node
 
getIdentifiers() - Method in class org.gbif.api.model.registry.Organization
 
getIndividualCount() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getInfraGeneric() - Method in class org.gbif.api.model.checklistbank.ParsedName
The infrageneric part of a name, often given in parenthesis between genus and species epithet, e.g.
getInfraSpecificEpithet() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
getInfraspecificEpithet() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getInputStream(File) - Static method in class org.gbif.utils.file.FileUtils
 
getInputStreamReader(InputStream) - Static method in class org.gbif.utils.file.FileUtils
 
getInputStreamReader(InputStream, String) - Static method in class org.gbif.utils.file.FileUtils
 
getInstallationKey() - Method in class org.gbif.api.model.registry.Dataset
 
getInstallationKey() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
Key of the synchronized installation.
getInstitutionCode() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getInstitutionCode() - Method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
getInterpreted() - Method in class org.gbif.api.model.common.InterpretedField
Deprecated.
 
getInterpretedOccurrencesPersistedError() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getInterpretedOccurrencesPersistedSuccessful() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getInvalidationReason() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
 
getInvalidationReason() - Method in class org.gbif.api.model.crawler.GenericValidationReport
 
getInvalidationReason() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
getIso2LetterCode() - Method in enum org.gbif.api.vocabulary.Country
 
getIso2LetterCode() - Method in enum org.gbif.api.vocabulary.Language
 
getIso3LetterCode() - Method in enum org.gbif.api.vocabulary.Country
 
getIso3LetterCode() - Method in enum org.gbif.api.vocabulary.Language
 
getIsoNumericalCode() - Method in enum org.gbif.api.vocabulary.Country
 
getIssues() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getIssues() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getKey() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getKey() - Method in class org.gbif.api.model.checklistbank.Description
A unique GBIF identifier for any description.
getKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
Return the key that uniquely identifies this name usage.
getKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Return the key that uniquely identifies this name usage.
getKey() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
getKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
Taxon key.
getKey() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
 
getKey() - Method in class org.gbif.api.model.common.GbifUser
 
getKey() - Method in class org.gbif.api.model.common.User
Deprecated.
 
getKey() - Method in class org.gbif.api.model.metrics.cube.Dimension
 
getKey() - Method in class org.gbif.api.model.occurrence.Download
 
getKey() - Method in class org.gbif.api.model.occurrence.predicate.InPredicate
 
getKey() - Method in class org.gbif.api.model.occurrence.predicate.SimplePredicate
 
getKey() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
The GBIF assigned, persistent key to the occurrence record.
getKey() - Method in class org.gbif.api.model.registry.Comment
 
getKey() - Method in class org.gbif.api.model.registry.Contact
 
getKey() - Method in class org.gbif.api.model.registry.Dataset
 
getKey() - Method in class org.gbif.api.model.registry.Endpoint
 
getKey() - Method in class org.gbif.api.model.registry.Identifier
 
getKey() - Method in class org.gbif.api.model.registry.Installation
 
getKey() - Method in class org.gbif.api.model.registry.MachineTag
 
getKey() - Method in class org.gbif.api.model.registry.Metadata
 
getKey() - Method in class org.gbif.api.model.registry.Network
 
getKey() - Method in interface org.gbif.api.model.registry.NetworkEntity
 
getKey() - Method in class org.gbif.api.model.registry.Node
 
getKey() - Method in class org.gbif.api.model.registry.Organization
 
getKey() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getKey() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
 
getKey() - Method in class org.gbif.api.model.registry.search.KeyTitleResult
 
getKey() - Method in class org.gbif.api.model.registry.Tag
 
getKeywordCollections() - Method in class org.gbif.api.model.registry.Dataset
 
getKeywords() - Method in class org.gbif.api.model.registry.eml.KeywordCollection
 
getKeywords() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getKingdom() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getKingdom() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getKingdom() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getKingdom() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getKingdom() - Method in interface org.gbif.api.model.common.LinneanClassification
Return the kingdom for this usage.
getKingdom() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getKingdomCounts() - Method in interface org.gbif.api.service.occurrence.OccurrenceDistributionIndexService
Returns the occurrence records count by kingdom.
getKingdomKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getKingdomKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getKingdomKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getKingdomKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getKingdomKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
Return the kingdom key for this usage.
getKingdomKey() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getLanguage() - Method in class org.gbif.api.model.checklistbank.Description
ISO 639-1 language code used for the vernacular name value.
getLanguage() - Method in class org.gbif.api.model.checklistbank.VernacularName
ISO 639-1 language code used for the vernacular name value.
getLanguage() - Method in class org.gbif.api.model.registry.Dataset
 
getLanguage() - Method in class org.gbif.api.model.registry.Network
 
getLanguage() - Method in class org.gbif.api.model.registry.Organization
 
getLastCrawled() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getLastCrawled() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
 
getLastCrawled() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
getLastInterpreted() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getLastInterpreted() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getLastLogin() - Method in class org.gbif.api.model.common.GbifUser
 
getLastLogin() - Method in class org.gbif.api.model.common.User
Deprecated.
 
getLastName() - Method in class org.gbif.api.model.common.AbstractGbifUser
 
getLastName() - Method in class org.gbif.api.model.common.User
Deprecated.
 
getLastName() - Method in class org.gbif.api.model.registry.Contact
 
getLastParsed() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
The date this record was last parsed from raw xml/json into verbatim verbatimFields.
getLastRecordLineNumber() - Method in interface org.gbif.utils.file.tabular.TabularDataFileReader
The line number of where the last record returned by TabularDataFileReader.read() starts.
getLastRecordNumber() - Method in interface org.gbif.utils.file.tabular.TabularDataFileReader
Represents the number of record returned by the TabularDataFileReader.read() method.
getLatinLabel() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus
 
getLatitude() - Method in class org.gbif.api.model.registry.eml.geospatial.Point
 
getLatitude() - Method in class org.gbif.api.model.registry.Organization
 
getLicense() - Method in class org.gbif.api.model.checklistbank.Description
Official permission to do something with the resource.
getLicense() - Method in class org.gbif.api.model.common.MediaObject
License for this media item.
getLicense() - Method in class org.gbif.api.model.occurrence.Download
Get the license assigned to this occurrence download.
getLicense() - Method in class org.gbif.api.model.occurrence.Occurrence
Applied license to the occurrence record or dataset to which this record belongs to.
getLicense() - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
getLicense() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getLicenseTitle() - Method in enum org.gbif.api.vocabulary.License
 
getLicenseUrl() - Method in enum org.gbif.api.vocabulary.License
 
getLifeForm() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
A term describing the growth/lifeform of an organism.
getLifeStage() - Method in class org.gbif.api.model.checklistbank.Distribution
The distribution information pertains solely to a specific life stage of the taxon.
getLifeStage() - Method in class org.gbif.api.model.checklistbank.VernacularName
The age class or life stage of the species for which the vernacular name applies.
getLifeStage() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getLimit() - Method in interface org.gbif.api.model.common.paging.Pageable
Maximum number of records to be returned.
getLimit() - Method in class org.gbif.api.model.common.paging.PageableBase
Total of rows that are returned.
getLineIterator(InputStream) - Static method in class org.gbif.utils.file.FileUtils
 
getLineIterator(InputStream, String) - Static method in class org.gbif.utils.file.FileUtils
 
getLinesPerMemorySort() - Method in class org.gbif.utils.file.FileUtils
 
getLink() - Method in class org.gbif.api.model.checklistbank.Reference
Link.
getLink() - Method in enum org.gbif.api.vocabulary.NomenclaturalCode
 
getLivingPeriod() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
The (geological) time a currently extinct organism is known to have lived.
getLivingPeriods() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
Convenience method that analyzes all species profile records and returns the distinct list of known living periods.
getLocale() - Method in enum org.gbif.api.vocabulary.Language
 
getLocality() - Method in class org.gbif.api.model.checklistbank.Distribution
The verbatim name of the area this distribution record is about.
getLocality() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getLocationId() - Method in class org.gbif.api.model.checklistbank.Distribution
A code for the named area this distributon record is about.
getLogoUrl() - Method in class org.gbif.api.model.registry.Dataset
 
getLogoUrl() - Method in class org.gbif.api.model.registry.Network
 
getLogoUrl() - Method in class org.gbif.api.model.registry.Node
 
getLogoUrl() - Method in class org.gbif.api.model.registry.Organization
 
getLongitude() - Method in class org.gbif.api.model.registry.eml.geospatial.Point
 
getLongitude() - Method in class org.gbif.api.model.registry.Organization
 
getLower() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
getLower() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
 
getMachineTags() - Method in class org.gbif.api.model.registry.Dataset
 
getMachineTags() - Method in class org.gbif.api.model.registry.Endpoint
 
getMachineTags() - Method in class org.gbif.api.model.registry.Installation
 
getMachineTags() - Method in interface org.gbif.api.model.registry.MachineTaggable
 
getMachineTags() - Method in class org.gbif.api.model.registry.Network
 
getMachineTags() - Method in class org.gbif.api.model.registry.Node
 
getMachineTags() - Method in class org.gbif.api.model.registry.Organization
 
getMaintenanceDescription() - Method in class org.gbif.api.model.registry.Dataset
A description of the maintenance frequency of this resource.
getMaintenanceUpdateFrequency() - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
getMarker() - Method in enum org.gbif.api.vocabulary.Rank
 
getMassInGram() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
Maximum observed weight of an organism in grams.
getMatchType() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getMaxLatitude() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
 
getMaxLongitude() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
 
getMedia() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getMedia() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getMessage() - Method in class org.gbif.api.model.common.messaging.Response
 
getMessageKey() - Method in class org.gbif.api.model.common.messaging.Response
 
getMetadata(int) - Method in interface org.gbif.api.service.registry.DatasetService
Get a metadata description by its key.
getMetadataDocument(UUID) - Method in interface org.gbif.api.service.registry.DatasetService
Retrieves a GBIF generated EML document overlaying GBIF information with any existing metadata document data.
getMetadataDocument(int) - Method in interface org.gbif.api.service.registry.DatasetService
Gets the actual metadata document content by its key.
getMethod() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
getMethodSteps() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
 
getMetrics(int) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Gets the metrics for a given name usage.
getMinLatitude() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
 
getMinLongitude() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
 
getModified() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getModified() - Method in class org.gbif.api.model.occurrence.Download
 
getModified() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getModified() - Method in class org.gbif.api.model.registry.Comment
 
getModified() - Method in class org.gbif.api.model.registry.Contact
 
getModified() - Method in class org.gbif.api.model.registry.Dataset
 
getModified() - Method in class org.gbif.api.model.registry.Endpoint
 
getModified() - Method in class org.gbif.api.model.registry.Installation
 
getModified() - Method in class org.gbif.api.model.registry.Metadata
 
getModified() - Method in class org.gbif.api.model.registry.Network
 
getModified() - Method in interface org.gbif.api.model.registry.NetworkEntity
 
getModified() - Method in class org.gbif.api.model.registry.Node
 
getModified() - Method in class org.gbif.api.model.registry.Organization
 
getModifiedBy() - Method in class org.gbif.api.model.registry.Comment
 
getModifiedBy() - Method in class org.gbif.api.model.registry.Contact
 
getModifiedBy() - Method in class org.gbif.api.model.registry.Dataset
 
getModifiedBy() - Method in class org.gbif.api.model.registry.Endpoint
 
getModifiedBy() - Method in class org.gbif.api.model.registry.Installation
 
getModifiedBy() - Method in class org.gbif.api.model.registry.Metadata
 
getModifiedBy() - Method in class org.gbif.api.model.registry.Network
 
getModifiedBy() - Method in interface org.gbif.api.model.registry.NetworkEntity
 
getModifiedBy() - Method in class org.gbif.api.model.registry.Node
 
getModifiedBy() - Method in class org.gbif.api.model.registry.Organization
 
getMonth() - Method in class org.gbif.api.model.occurrence.Occurrence
The month of the year of the event date starting with zero for january following Date.
getMostRestrictive(License, License, License) - Static method in enum org.gbif.api.vocabulary.License
Get the most restrictive license between the 2 provided licenses.
getName() - Method in class org.gbif.api.model.common.AbstractGbifUser
 
getName() - Method in class org.gbif.api.model.common.AppPrincipal
 
getName() - Method in class org.gbif.api.model.common.GbifUserPrincipal
 
getName() - Method in class org.gbif.api.model.common.search.Facet.Count
Name is the label/name/title used to distinguish this category in the list of counts.
getName() - Method in class org.gbif.api.model.common.User
Deprecated.
 
getName() - Method in class org.gbif.api.model.common.UserPrincipal
Deprecated.
 
getName() - Method in class org.gbif.api.model.registry.eml.Collection
The official name of the Collection in the local language.
getName() - Method in class org.gbif.api.model.registry.eml.DataDescription
The name representing the data object being described.
getName() - Method in class org.gbif.api.model.registry.MachineTag
 
getName() - Method in enum org.gbif.api.vocabulary.TagName
Actual machine tag name.
getNameKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getNameKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getNameKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getNamespace() - Method in class org.gbif.api.model.registry.MachineTag
 
getNamespace() - Method in enum org.gbif.api.vocabulary.TagName
Namespace to which belong this tag.
getNamespace() - Method in enum org.gbif.api.vocabulary.TagNamespace
 
getNameType() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getNameType() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getNomenclaturalStatus() - Method in class org.gbif.api.model.checklistbank.NameUsage
The status related to the conformance to the relevant rules of nomenclature.
getNomenclaturalStatus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getNomStatus() - Method in class org.gbif.api.model.checklistbank.ParsedName
Any nomenclatoral remarks given in this name, e.g.
getNote() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
Optional notes on the matching.
getNotho() - Method in class org.gbif.api.model.checklistbank.ParsedName
For hybrid names notho indicates which part of the name is considered a hybrid, i.e.
getNotificationAddresses() - Method in class org.gbif.api.model.occurrence.DownloadRequest
 
getNotificationAddressesAsString() - Method in class org.gbif.api.model.occurrence.DownloadRequest
Returns the notification addresses as single string.
getNubCoveragePct() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getNubKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getNubKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getNubKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getNubMatchingCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getNumberDatasets() - Method in class org.gbif.api.model.occurrence.Download
Number of occurrence records in the download file.
getNumberRecords() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
Number of records that the dataset has provided to the occurrence download.
getNumByRank(Rank) - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Gets the count of usages by a rank.
getNumChildren() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Returns the number of direct taxonomic elements under this usage.
getNumClass() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Returns the number of classes that are below this taxon.
getNumConstituents() - Method in class org.gbif.api.model.registry.Dataset
 
getNumConstituents() - Method in class org.gbif.api.model.registry.Network
 
getNumDescendants() - Method in class org.gbif.api.model.checklistbank.NameUsage
The number of all accepted taxonomic elements under this usage.
getNumDescendants() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
The number of all accepted taxonomic elements under this usage.
getNumDescendants() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getNumFamily() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Returns the number of families that are below this taxon.
getNumFound() - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
 
getNumGenus() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Returns the number of genus that are below this taxon.
getNumOccurrences() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getNumOrder() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Returns the number of orders that are below this taxon.
getNumPhylum() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Returns the number of phyla that are below this taxon.
getNumPublishedDatasets() - Method in class org.gbif.api.model.registry.Organization
 
getNumSpecies() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Returns the number of species that are below this taxon.
getNumSubgenus() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Returns the number of distinct subgenera that are below this taxon.
getNumSynonyms() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
Returns the number of related synonyms this usage possses.
getOccurrenceId() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getOccurrenceId() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
getOccurrenceReport() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
 
getOffset() - Method in interface org.gbif.api.model.common.paging.Pageable
Defines how many items to skip before beginning to return records.
getOffset() - Method in class org.gbif.api.model.common.paging.PageableBase
Defines how many items to skip before beginning to return rows.
getOrDefault(Map<K, V>, K, V) - Static method in class org.gbif.utils.collection.MapUtils
Returns a maps value or a given default if not present.
getOrder() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getOrder() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getOrder() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getOrder() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getOrder() - Method in interface org.gbif.api.model.common.LinneanClassification
Return the order for this usage.
getOrder() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getOrderKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getOrderKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getOrderKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getOrderKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getOrderKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
Return the order key for this usage.
getOrderKey() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getOrganization() - Method in interface org.gbif.api.model.registry.Address
Institution name as part of the address
getOrganization() - Method in class org.gbif.api.model.registry.Contact
 
getOrganization() - Method in class org.gbif.api.model.registry.Network
Alias for the network title
getOrganization() - Method in class org.gbif.api.model.registry.Node
 
getOrganization() - Method in class org.gbif.api.model.registry.Organization
 
getOrganizationKey() - Method in class org.gbif.api.model.registry.Installation
 
getOrigin() - Method in class org.gbif.api.model.checklistbank.NameUsage
The origin of this name usage record, i.e.
getOrigin() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getOtherCount(String) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
Get the metrics for other dynamic counts.
getOtherCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getPagesCrawled() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
Number of pages crawled in total.
getPagesFragmentedError() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getPagesFragmentedSuccessful() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
Number of pages that have been fragmented.
getParameter() - Method in class org.gbif.api.model.occurrence.predicate.IsNotNullPredicate
 
getParameters() - Method in class org.gbif.api.model.common.search.SearchRequest
List of input parameters of the search operation.
getParent() - Method in class org.gbif.api.model.checklistbank.NameUsage
The scientific name of the parent.
getParent() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getParent() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getParentDatasetKey() - Method in class org.gbif.api.model.registry.Dataset
 
getParentIdentifier() - Method in class org.gbif.api.model.registry.eml.Collection
The identifier for the parent collection for this sub-collection.
getParentKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
Returns the immediate parent.
getParentKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getParentKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getParsedName(int) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Gets the parsed name representation of a given name usage.
getParticipantSince() - Method in class org.gbif.api.model.registry.Node
4 digit year since the node participant first joined GBIF.
getParticipantTitle() - Method in class org.gbif.api.model.registry.Node
 
getParticipationStatus() - Method in class org.gbif.api.model.registry.Node
 
getPassword() - Method in class org.gbif.api.model.registry.Installation
Get the installation password.
getPassword() - Method in class org.gbif.api.model.registry.Organization
Get the organization password.
getPasswordHash() - Method in class org.gbif.api.model.common.GbifUser
 
getPasswordHash() - Method in class org.gbif.api.model.common.User
Deprecated.
 
getPendingDwcaDatasetProcesses() - Method in interface org.gbif.api.service.crawler.DatasetProcessService
 
getPendingXmlDatasetProcesses() - Method in interface org.gbif.api.service.crawler.DatasetProcessService
 
getPeriod() - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
 
getPhone() - Method in interface org.gbif.api.model.registry.Address
phone in EML
getPhone() - Method in class org.gbif.api.model.registry.Contact
 
getPhone() - Method in class org.gbif.api.model.registry.Network
 
getPhone() - Method in class org.gbif.api.model.registry.Node
 
getPhone() - Method in class org.gbif.api.model.registry.Organization
 
getPhylum() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getPhylum() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getPhylum() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getPhylum() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getPhylum() - Method in interface org.gbif.api.model.common.LinneanClassification
Return the phylum for this usage.
getPhylum() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getPhylumKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getPhylumKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getPhylumKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getPhylumKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getPhylumKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
Return the phylum key for this usage.
getPhylumKey() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getPoints() - Method in class org.gbif.api.model.registry.eml.geospatial.Polygon
 
getPosition() - Method in class org.gbif.api.model.registry.Contact
 
getPostalCode() - Method in interface org.gbif.api.model.registry.Address
postalCode in EML
getPostalCode() - Method in class org.gbif.api.model.registry.Contact
 
getPostalCode() - Method in class org.gbif.api.model.registry.Network
 
getPostalCode() - Method in class org.gbif.api.model.registry.Node
 
getPostalCode() - Method in class org.gbif.api.model.registry.Organization
 
getPredicate() - Method in class org.gbif.api.model.occurrence.DownloadRequest
 
getPredicate() - Method in class org.gbif.api.model.occurrence.predicate.NotPredicate
 
getPredicates() - Method in class org.gbif.api.model.occurrence.predicate.CompoundPredicate
Returns all the predicates this compound predicate is made out of in an immutable collection.
getPredicates() - Method in enum org.gbif.api.vocabulary.TagNamespace
Gets the list of TagName which belongs to the namespace.
getPrefix() - Method in class org.gbif.api.model.common.DOI
 
getProcessingErrorType() - Method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
getProcessStateChecklist() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getProcessStateOccurrence() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getProcessStateSample() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getProject() - Method in class org.gbif.api.model.registry.Dataset
 
getProjectIdentifier() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getProParteKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
Pro parte synonyms, i.e.
getProperties() - Method in class org.gbif.api.model.crawler.CrawlJob
Used to save protocol specific information (e.g.
getProperty(String) - Method in class org.gbif.api.model.crawler.CrawlJob
 
getProtocol() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
getProvince() - Method in interface org.gbif.api.model.registry.Address
administrativeArea in EML
getProvince() - Method in class org.gbif.api.model.registry.Contact
 
getProvince() - Method in class org.gbif.api.model.registry.Network
 
getProvince() - Method in class org.gbif.api.model.registry.Node
 
getProvince() - Method in class org.gbif.api.model.registry.Organization
 
getPubDate() - Method in class org.gbif.api.model.registry.Dataset
 
getPublishedIn() - Method in class org.gbif.api.model.checklistbank.NameUsage
Original publication for this name usage.
getPublishedIn() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getPublisher() - Method in class org.gbif.api.model.common.MediaObject
An entity responsible for making the media item available.
getPublisherTitle() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getPublishingCountry() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
The country of the organization that publishes the dataset to which the occurrence belongs.
getPublishingCountry() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getPublishingOrganizationKey() - Method in class org.gbif.api.model.registry.Dataset
 
getPublishingOrganizationKey() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getPublishingOrganizationTitle() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getPublishingOrgKey() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
getPurpose() - Method in class org.gbif.api.model.registry.Dataset
 
getQ() - Method in class org.gbif.api.model.common.search.SearchRequest
Query parameter.
getQualityControl() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
 
getQueryFields() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
Defines whether to match against fields with scientific or vernacular names or both.
getQuotedBy() - Method in class org.gbif.utils.file.csv.CSVReaderFactory.CSVMetadata
 
getQuotedBy() - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
 
getRank() - Method in class org.gbif.api.model.checklistbank.NameUsage
Returns the rank for this usage.
getRank() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getRank() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
getRank() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getRank() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getRank() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
 
getRawOccurrencesPersistedError() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getRawOccurrencesPersistedNew() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getRawOccurrencesPersistedUnchanged() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getRawOccurrencesPersistedUpdated() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getReadRows() - Method in class org.gbif.utils.file.csv.CSVReader
 
getReason() - Method in enum org.gbif.api.model.common.messaging.Response.StatusCode
 
getRecordCount() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getRecordedBy() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getRecordId() - Method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
getRecordsMissingOccurrenceId() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
getRecordsWithInvalidTriplets() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
getReferenceList() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getReferences() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getReferences() - Method in class org.gbif.api.model.common.MediaObject
 
getReferences() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getRegistryKey() - Method in class org.gbif.api.util.DatasetKey
A registered UUID of either a dataset or the network of origin in the case of external datasets.
getRelatedOccurrenceId() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
getRelatedResponses() - Method in class org.gbif.api.model.common.messaging.ResponseChain
 
getRelatedTerms() - Method in interface org.gbif.api.vocabulary.InterpretationRemark
Set containing the Term considered to flag this remark.
getRelatedTerms() - Method in enum org.gbif.api.vocabulary.NameUsageIssue
 
getRelatedTerms() - Method in enum org.gbif.api.vocabulary.OccurrenceIssue
 
getRelations() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getRemarks() - Method in class org.gbif.api.model.checklistbank.Distribution
Additional notes on the distribution.
getRemarks() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getRemarks() - Method in class org.gbif.api.model.checklistbank.ParsedName
Any further remarks found
getRemarks() - Method in class org.gbif.api.model.checklistbank.Reference
Annotation of taxon-specific information related to the referenced publication.
getRemarks() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
getRemarks() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
getRequest() - Method in class org.gbif.api.model.occurrence.Download
Request that originated the download.
getResult() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
Result of the metasync operation.
getResult(String) - Method in interface org.gbif.api.service.occurrence.DownloadRequestService
 
getResults() - Method in class org.gbif.api.model.common.paging.PagingResponse
Gets the list of results.
getRights() - Method in class org.gbif.api.model.registry.Dataset
Any kind of (copy)rights/IPR statements that apply to the datasets data.
getRightsHolder() - Method in class org.gbif.api.model.common.MediaObject
 
getRoles() - Method in class org.gbif.api.model.common.AbstractGbifUser
 
getRoles() - Method in class org.gbif.api.model.common.User
Deprecated.
 
getRootException() - Method in class org.gbif.api.model.common.messaging.Response
 
getRowNumbersMissingId() - Method in class org.gbif.api.model.crawler.GenericValidationReport
 
getRowType() - Method in enum org.gbif.api.vocabulary.Extension
 
getRunningDatasetProcesses() - Method in interface org.gbif.api.service.crawler.DatasetProcessService
 
getSampling() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
 
getSamplingDescription() - Method in class org.gbif.api.model.registry.Dataset
 
getSchema() - Method in interface org.gbif.api.service.metrics.CubeService
Provides the list of rollups thus specifying the available combinations of addressable dimensions for a cube.
getScientificName() - Method in class org.gbif.api.model.checklistbank.NameUsage
The taxon name (with date and authorship information if applicable).
getScientificName() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
The scientific name of the looked up name usage.
getScientificName() - Method in class org.gbif.api.model.checklistbank.ParsedName
The exact verbatim, full scientific name as given before parsing.
getScientificName() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getScientificName() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getScientificName() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
The scientific name originally used for the specimen, species or genus.
getScientificName() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getScientificName() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
 
getSendNotification() - Method in class org.gbif.api.model.occurrence.DownloadRequest
 
getSensu() - Method in class org.gbif.api.model.checklistbank.ParsedName
Taxon concept references as part of the name, e.g.
getSettings() - Method in class org.gbif.api.model.common.AbstractGbifUser
Gets the settings which may be empty but never null.
getSettings() - Method in class org.gbif.api.model.common.User
Deprecated.
Gets the settings which may be empty but never null.
getSeverity() - Method in interface org.gbif.api.vocabulary.InterpretationRemark
Returns the default severity of this InterpretationRemark.
getSeverity() - Method in enum org.gbif.api.vocabulary.NameUsageIssue
 
getSeverity() - Method in enum org.gbif.api.vocabulary.OccurrenceIssue
 
getSex() - Method in class org.gbif.api.model.checklistbank.VernacularName
The sex (gender) of the taxon for which the vernacular name applies when the vernacular name is limited to a specific gender of a species.
getSex() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getSize() - Method in class org.gbif.api.model.occurrence.Download
Size in bytes of the produced file.
getSizeInMillimeter() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
Maximum observed size of an organism in millimeter.
getSource() - Method in class org.gbif.api.model.checklistbank.Description
Source reference of this description, a URL or full publication citation.
getSource() - Method in class org.gbif.api.model.checklistbank.Distribution
Source reference for this distribution record.
getSource() - Method in interface org.gbif.api.model.checklistbank.NameUsageExtension
 
getSource() - Method in class org.gbif.api.model.checklistbank.Reference
 
getSource() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
 
getSource() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
The source.
getSource() - Method in class org.gbif.api.model.checklistbank.VernacularName
Bibliographic citation referencing a source where the vernacular name refers to the cited species.
getSource() - Method in class org.gbif.api.model.common.MediaObject
 
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.Description
 
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.Distribution
 
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
For backbone taxa the source taxon key refers to the original name usage that was used during nub building and is the primary reason that this taxon exists in the backbone.
getSourceTaxonKey() - Method in interface org.gbif.api.model.checklistbank.NameUsageExtension
If the source is another name usage this is the taxonKey of that usage.
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMediaObject
 
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.Reference
 
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
 
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
 
getSourceTaxonKey() - Method in class org.gbif.api.model.checklistbank.VernacularName
 
getSpecies() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getSpecies() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getSpecies() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getSpecies() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getSpecies() - Method in interface org.gbif.api.model.common.LinneanClassification
Return the species for this usage.
getSpecies() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getSpeciesKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getSpeciesKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getSpeciesKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getSpeciesKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getSpeciesKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
Return the species key for this usage.
getSpeciesKey() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getSpeciesProfiles() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getSpecificEpithet() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
getSpecificEpithet() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getSpecimenPreservationMethod() - Method in class org.gbif.api.model.registry.eml.Collection
Picklist keyword indicating the process or technique used to prevent physical deterioration of non-living collections.
getSpellCheckCount() - Method in class org.gbif.api.model.common.search.SearchRequest
 
getSpellCheckResponse() - Method in class org.gbif.api.model.common.search.SearchResponse
 
getStackTrace(Throwable) - Static method in class org.gbif.utils.text.StringUtils
Reads a stack trace from an exception and returns it as a String.
getStart() - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
 
getStartDayOfYear() - Method in class org.gbif.api.model.checklistbank.Distribution
Seasonal temporal subcontext within the eventDate context.
getStartedCrawling() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
Timestamp of when the crawl was actually started by a crawler.
getStateProvince() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getStatus() - Method in class org.gbif.api.model.checklistbank.Distribution
Term describing the occurrence status of the organism in the given area based on how frequent the species occurs.
getStatus() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
The taxonomic status of the backbone usage.
getStatus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getStatus() - Method in class org.gbif.api.model.common.DoiData
 
getStatus() - Method in class org.gbif.api.model.common.messaging.Response
 
getStatus() - Method in class org.gbif.api.model.occurrence.Download
 
getStatusCode() - Method in class org.gbif.api.model.common.messaging.Response
 
getStrain() - Method in class org.gbif.api.model.checklistbank.ParsedName
The strain or isolate name.
getStudyAreaDescription() - Method in class org.gbif.api.model.registry.eml.Project
 
getStudyExtent() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
 
getSubgenus() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getSubgenus() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getSubgenus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getSubgenus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getSubgenus() - Method in interface org.gbif.api.model.common.LinneanClassification
Return the canonical subgenus name for this usage.
getSubgenus() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getSubgenusKey() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
getSubgenusKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
getSubgenusKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getSubgenusKey() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
getSubgenusKey() - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
Return the subgenus key for this usage.
getSubgenusKey() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getSubtype() - Method in class org.gbif.api.model.registry.Dataset
 
getSubtype() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getSubtype() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
 
getSuffix() - Method in class org.gbif.api.model.common.DOI
 
getSuggestion(String) - Method in class org.gbif.api.model.common.search.SpellCheckResponse
 
getSuggestions() - Method in class org.gbif.api.model.common.search.SpellCheckResponse
 
getSyncDate() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
Date when the metasync operation was executed.
getSynonyms() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getSynonymsCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getSystemSettings() - Method in class org.gbif.api.model.common.AbstractGbifUser
Gets the settings which may be empty but never null.
getTags() - Method in class org.gbif.api.model.registry.Dataset
 
getTags() - Method in class org.gbif.api.model.registry.Installation
 
getTags() - Method in class org.gbif.api.model.registry.Network
 
getTags() - Method in class org.gbif.api.model.registry.Node
 
getTags() - Method in class org.gbif.api.model.registry.Organization
 
getTags() - Method in interface org.gbif.api.model.registry.Taggable
 
getTarget() - Method in class org.gbif.api.model.common.DoiData
 
getTargetUrl() - Method in class org.gbif.api.model.crawler.CrawlJob
 
getTaxonID() - Method in class org.gbif.api.model.checklistbank.NameUsage
The original taxonID of the name usage as found in the source.
getTaxonID() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.Description
The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.Distribution
The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in interface org.gbif.api.model.checklistbank.NameUsageExtension
The name usage "taxon" key this extension record belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMediaObject
The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.Reference
The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.checklistbank.VernacularName
The name usage "taxon" key this description belongs to.
getTaxonKey() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getTaxonomicCoverages() - Method in class org.gbif.api.model.registry.Dataset
 
getTaxonomicStatus() - Method in class org.gbif.api.model.checklistbank.NameUsage
The taxonomic status of the name usage.
getTaxonomicStatus() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getTaxonRank() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
The rank of the taxon bearing the scientific name.
getTaxonRank() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getTemporal() - Method in class org.gbif.api.model.checklistbank.Distribution
 
getTemporalCoverages() - Method in class org.gbif.api.model.registry.Dataset
 
getTerminalEpithet() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
getText() - Method in class org.gbif.api.model.registry.Citation
 
getThesaurus() - Method in class org.gbif.api.model.registry.eml.KeywordCollection
 
getThreatStatus() - Method in class org.gbif.api.model.checklistbank.Distribution
Threat status of a species as defined by IUCN (http://www.iucnredlist.org/static/categories_criteria_3_1#categories).
getThreatStatus() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
Convenience method that analyzes all distribution records and returns the distinct list of known threat status.
getThreatStatuses() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getTitle() - Method in class org.gbif.api.model.checklistbank.Reference
Deprecated.
getTitle() - Method in class org.gbif.api.model.common.Identifier
The optional title of an identifier, mostly for linking.
getTitle() - Method in class org.gbif.api.model.common.MediaObject
The media item title.
getTitle() - Method in class org.gbif.api.model.registry.Dataset
 
getTitle() - Method in class org.gbif.api.model.registry.eml.Project
 
getTitle() - Method in class org.gbif.api.model.registry.Installation
 
getTitle() - Method in class org.gbif.api.model.registry.Network
 
getTitle() - Method in interface org.gbif.api.model.registry.NetworkEntity
 
getTitle() - Method in class org.gbif.api.model.registry.Node
 
getTitle() - Method in class org.gbif.api.model.registry.Organization
 
getTitle() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getTitle() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
 
getTitle() - Method in class org.gbif.api.model.registry.search.KeyTitleResult
 
getTitle() - Method in enum org.gbif.api.vocabulary.Continent
 
getTitle() - Method in enum org.gbif.api.vocabulary.Country
 
getTitle() - Method in enum org.gbif.api.vocabulary.NomenclaturalCode
 
getTitleEnglish() - Method in enum org.gbif.api.vocabulary.Language
 
getTitleNative() - Method in enum org.gbif.api.vocabulary.Language
 
getTitles(Collection<UUID>) - Method in interface org.gbif.api.service.registry.NetworkEntityService
Retrieves all titles for the requested entity keys in one go
getToc() - Method in class org.gbif.api.model.checklistbank.TableOfContents
 
getToc(int) - Method in interface org.gbif.api.service.checklistbank.DescriptionService
Returns a table of content for all available descriptions of a name usage.
getTotalRecords() - Method in class org.gbif.api.model.occurrence.Download
Number of occurrence records in the download file.
getType() - Method in class org.gbif.api.model.checklistbank.Description
Returns the type used to categorize paragraphs of a taxon description.
getType() - Method in class org.gbif.api.model.checklistbank.ParsedName
A coarse classification of names helping to deal with different syntactical name string structures.
getType() - Method in class org.gbif.api.model.checklistbank.Reference
Used to assign a bibliographic reference to list of taxonomic or nomenclatural categories.
getType() - Method in class org.gbif.api.model.common.Identifier
Type of identifier.
getType() - Method in class org.gbif.api.model.common.MediaObject
 
getType() - Method in class org.gbif.api.model.metrics.cube.Dimension
 
getType() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
getType() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
getType() - Method in class org.gbif.api.model.registry.Contact
 
getType() - Method in class org.gbif.api.model.registry.Dataset
 
getType() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
 
getType() - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
 
getType() - Method in class org.gbif.api.model.registry.Endpoint
 
getType() - Method in class org.gbif.api.model.registry.Identifier
 
getType() - Method in class org.gbif.api.model.registry.Installation
 
getType() - Method in class org.gbif.api.model.registry.Metadata
 
getType() - Method in class org.gbif.api.model.registry.Node
 
getType() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
getType() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
 
getTypeDesignatedBy() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
The citation of the publication where the type designation is found.
getTypeDesignationType() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
The reason why this specimen or name is designated as a type.
getTypeSpecimens() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getTypeStatus() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getTypeStatus() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getTypeVerbatim() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
 
getTypifiedName() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getUniqueOccurrenceIds() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
getUniqueTriplets() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
getUnit() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
getUpper() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
getUpper() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
 
getUrl() - Method in class org.gbif.api.model.common.DOI
getUrl() - Method in class org.gbif.api.model.registry.eml.DataDescription
The URL to download the resource in the mentioned format.
getUrl() - Method in class org.gbif.api.model.registry.Endpoint
 
getUsageKey() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
The key of the name usage that has been looked up.
getUsagesCount() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
getUser() - Method in class org.gbif.api.model.common.GbifUserPrincipal
 
getUser() - Method in class org.gbif.api.model.common.UserPrincipal
Deprecated.
 
getUserId() - Method in class org.gbif.api.model.registry.Contact
 
getUserName() - Method in class org.gbif.api.model.common.AbstractGbifUser
The unique, immutable drupal user account name.
getUserName() - Method in class org.gbif.api.model.common.User
Deprecated.
The unique, immutable drupal user account name.
getUtf8Reader(File) - Static method in class org.gbif.utils.file.FileUtils
 
getValue() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
getValue() - Method in class org.gbif.api.model.occurrence.predicate.SimplePredicate
 
getValue() - Method in class org.gbif.api.model.registry.MachineTag
 
getValue() - Method in class org.gbif.api.model.registry.Tag
 
getValueOfFirst(Map<Term, String>, Term...) - Static method in class org.gbif.dwc.terms.Terms
Tries various terms in given order until it finds a non empty value.
getValues() - Method in class org.gbif.api.model.occurrence.predicate.InPredicate
 
getVerbatim() - Method in class org.gbif.api.model.common.InterpretedField
Deprecated.
 
getVerbatim(int) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Returns the verbatim data for the usage or null if its a generated usage having no verbatim data.
getVerbatim(Integer) - Method in interface org.gbif.api.service.occurrence.OccurrenceService
Attempt to find the verbatim values for an occurrence matching the passed key.
getVerbatimEventDate() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getVerbatimField(Term) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
Get the value of a specific field (Term).
getVerbatimFields() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
A map holding all verbatim core terms.
getVerbatimLabel() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getVerbatimLatitude() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getVerbatimLongitude() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
getVerbatimOccurrencesPersistedError() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getVerbatimOccurrencesPersistedSuccessful() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
getVernacularName() - Method in class org.gbif.api.model.checklistbank.NameUsage
A common or vernacular name for this usage.
getVernacularName() - Method in class org.gbif.api.model.checklistbank.VernacularName
A common or vernacular name.
getVernacularNames() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
getVernacularNames() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
getVersion() - Method in class org.gbif.api.model.registry.Dataset
 
getWaterBody() - Method in class org.gbif.api.model.occurrence.Occurrence
 
getYear() - Method in class org.gbif.api.model.checklistbank.ParsedName
The year of publication as given in the authorship.
getYear() - Method in class org.gbif.api.model.occurrence.Occurrence
The full year of the event date.
getYearCounts(int, int) - Method in interface org.gbif.api.service.occurrence.OccurrenceDistributionIndexService
Returns the occurrence records count by year.
getYearInt() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
GreaterThanOrEqualsPredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate checks if its key is greater than or equal its value.
GreaterThanOrEqualsPredicate(OccurrenceSearchParameter, String) - Constructor for class org.gbif.api.model.occurrence.predicate.GreaterThanOrEqualsPredicate
 
GreaterThanPredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate checks if its key is greater than its value.
GreaterThanPredicate(OccurrenceSearchParameter, String) - Constructor for class org.gbif.api.model.occurrence.predicate.GreaterThanPredicate
 
GROUP_CRAWLING - Static variable in enum org.gbif.dwc.terms.GbifTerm
 
GROUP_DATASET - Static variable in enum org.gbif.dwc.terms.GbifTerm
 
GROUP_EVENT - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_GEOLOGICALCONTEXT - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_IDENTIFICATION - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_LOCATION - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_MATERIAL_SAMPLE - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_MEASUREMENTORFACT - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_OCCURRENCE - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_ORGANISM - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_RECORD - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_RESOURCERELATIONSHIP - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_ROW_TYPE - Static variable in enum org.gbif.dwc.terms.GbifTerm
 
GROUP_SPECIES_DISTRIBUTION_EXTENSION - Static variable in enum org.gbif.dwc.terms.GbifTerm
 
GROUP_SPECIES_PROFILE_EXTENSION - Static variable in enum org.gbif.dwc.terms.GbifTerm
 
GROUP_TAXON - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
GROUP_VERNACULAR_NAME_EXTENSION - Static variable in enum org.gbif.dwc.terms.GbifTerm
 
GROUPS - Static variable in enum org.gbif.dwc.terms.DwcTerm
Lists all term groups in the order given on the Darwin Core Quick Reference Guide.
GROUPS - Static variable in enum org.gbif.dwc.terms.GbifTerm
Lists all GBIF term groups.

H

Habitat - Enum in org.gbif.api.vocabulary
Very coarse habitat vocabulary matching the boolean biome flags found in the species profile extension.
hasAuthorship() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
hasContent(LinneanClassification) - Static method in class org.gbif.api.util.ClassificationUtils
 
hasCoreField(Term) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
 
hasExtension(Extension) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
 
hasExtension(Term) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
 
hashCode() - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
hashCode() - Method in class org.gbif.api.model.checklistbank.Description
 
hashCode() - Method in class org.gbif.api.model.checklistbank.Distribution
 
hashCode() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
hashCode() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
hashCode() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
hashCode() - Method in class org.gbif.api.model.checklistbank.NameUsageMetrics
 
hashCode() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
hashCode() - Method in class org.gbif.api.model.checklistbank.Reference
 
hashCode() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
hashCode() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
hashCode() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
 
hashCode() - Method in class org.gbif.api.model.checklistbank.TableOfContents
 
hashCode() - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
 
hashCode() - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
 
hashCode() - Method in class org.gbif.api.model.checklistbank.VernacularName
 
hashCode() - Method in class org.gbif.api.model.common.AbstractGbifUser
 
hashCode() - Method in class org.gbif.api.model.common.DOI
 
hashCode() - Method in class org.gbif.api.model.common.DoiData
 
hashCode() - Method in class org.gbif.api.model.common.GbifUser
 
hashCode() - Method in class org.gbif.api.model.common.Identifier
 
hashCode() - Method in class org.gbif.api.model.common.InterpretedField
Deprecated.
 
hashCode() - Method in class org.gbif.api.model.common.MediaObject
 
hashCode() - Method in class org.gbif.api.model.common.paging.PagingResponse
 
hashCode() - Method in class org.gbif.api.model.common.search.Facet.Count
 
hashCode() - Method in class org.gbif.api.model.common.search.Facet
 
hashCode() - Method in class org.gbif.api.model.common.search.SearchResponse
 
hashCode() - Method in class org.gbif.api.model.common.search.SpellCheckResponse
 
hashCode() - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
 
hashCode() - Method in class org.gbif.api.model.common.User
Deprecated.
 
hashCode() - Method in class org.gbif.api.model.crawler.CrawlJob
 
hashCode() - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
hashCode() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
 
hashCode() - Method in class org.gbif.api.model.crawler.GenericValidationReport
 
hashCode() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
hashCode() - Method in class org.gbif.api.model.metrics.cube.Dimension
 
hashCode() - Method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
hashCode() - Method in class org.gbif.api.model.occurrence.Download
 
hashCode() - Method in class org.gbif.api.model.occurrence.DownloadRequest
 
hashCode() - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
hashCode() - Method in class org.gbif.api.model.occurrence.Occurrence
 
hashCode() - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
hashCode() - Method in class org.gbif.api.model.occurrence.predicate.CompoundPredicate
 
hashCode() - Method in class org.gbif.api.model.occurrence.predicate.InPredicate
 
hashCode() - Method in class org.gbif.api.model.occurrence.predicate.IsNotNullPredicate
 
hashCode() - Method in class org.gbif.api.model.occurrence.predicate.NotPredicate
 
hashCode() - Method in class org.gbif.api.model.occurrence.predicate.SimplePredicate
 
hashCode() - Method in class org.gbif.api.model.occurrence.predicate.WithinPredicate
 
hashCode() - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
hashCode() - Method in class org.gbif.api.model.registry.Citation
 
hashCode() - Method in class org.gbif.api.model.registry.Comment
 
hashCode() - Method in class org.gbif.api.model.registry.Contact
 
hashCode() - Method in class org.gbif.api.model.registry.Dataset
 
hashCode() - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
hashCode() - Method in class org.gbif.api.model.registry.eml.Collection
 
hashCode() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnit
 
hashCode() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
hashCode() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
 
hashCode() - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitRange
 
hashCode() - Method in class org.gbif.api.model.registry.eml.DataDescription
 
hashCode() - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
 
hashCode() - Method in class org.gbif.api.model.registry.eml.KeywordCollection
 
hashCode() - Method in class org.gbif.api.model.registry.eml.Project
 
hashCode() - Method in class org.gbif.api.model.registry.eml.SamplingDescription
 
hashCode() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
 
hashCode() - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
 
hashCode() - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
 
hashCode() - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
 
hashCode() - Method in class org.gbif.api.model.registry.eml.temporal.VerbatimTimePeriod
 
hashCode() - Method in class org.gbif.api.model.registry.Endpoint
 
hashCode() - Method in class org.gbif.api.model.registry.Identifier
 
hashCode() - Method in class org.gbif.api.model.registry.Installation
 
hashCode() - Method in class org.gbif.api.model.registry.MachineTag
 
hashCode() - Method in class org.gbif.api.model.registry.Metadata
 
hashCode() - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
 
hashCode() - Method in class org.gbif.api.model.registry.Network
 
hashCode() - Method in class org.gbif.api.model.registry.Node
 
hashCode() - Method in class org.gbif.api.model.registry.Organization
 
hashCode() - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
hashCode() - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
 
hashCode() - Method in class org.gbif.api.model.registry.search.KeyTitleResult
 
hashCode() - Method in class org.gbif.api.model.registry.Tag
 
hashCode() - Method in class org.gbif.dwc.terms.UnknownTerm
 
hasNext() - Method in class org.gbif.utils.file.csv.CSVReader
 
hasRole(UserRole) - Method in class org.gbif.api.model.common.AbstractGbifUser
Checks if the user has the given user role.
hasRole(String) - Method in class org.gbif.api.model.common.AppPrincipal
 
hasRole(String) - Method in interface org.gbif.api.model.common.ExtendedPrincipal
 
hasRole(String) - Method in class org.gbif.api.model.common.GbifUserPrincipal
Checks if the user has the given string based role.
hasRole(UserRole) - Method in class org.gbif.api.model.common.User
Deprecated.
Checks if the user has the given user role.
hasRole(String) - Method in class org.gbif.api.model.common.UserPrincipal
Deprecated.
Checks if the user has the given string based role.
hasRowError() - Method in interface org.gbif.utils.file.ClosableReportingIterator
Return true if an error was encountered while iterating over row.
hasRowError() - Method in class org.gbif.utils.file.csv.CSVReader
 
hasSpatialIssue() - Method in class org.gbif.api.model.occurrence.Occurrence
 
hasVerbatimField(Term) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
header - Variable in class org.gbif.utils.file.csv.CSVReader
 
headerRows - Variable in class org.gbif.utils.file.csv.CSVReader
 
HIGHER_RANKS - Static variable in enum org.gbif.dwc.terms.DwcTerm
List of all higher rank terms in dwc, ordered by rank and starting with kingdom.
higherThan(Rank) - Method in enum org.gbif.api.vocabulary.Rank
 
hostedDatasets(UUID, Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService
Provides paging service to list datasets hosted by, but not owned by, a specific organization.
hostedDatasets(UUID, DatasetType, OrganizationService) - Static method in class org.gbif.api.util.iterables.Iterables
 
hostedDatasets(UUID, DatasetType, InstallationService) - Static method in class org.gbif.api.util.iterables.Iterables
 
HttpURI - Annotation Type in org.gbif.api.util
Validates that the URI field is absolute, beginning with either http or https.
humanReadableByteCount(long, boolean) - Static method in class org.gbif.utils.file.FileUtils
Converts the byte size into human-readable format.
HumanSize - Class in org.gbif.utils
 
HumanSize() - Constructor for class org.gbif.utils.HumanSize
 
HYBRID_MARKER - Static variable in class org.gbif.api.model.checklistbank.ParsedName
 

I

Identifiable - Interface in org.gbif.api.model.registry
Generic identifier interface for entities.
Identifier - Class in org.gbif.api.model.common
Identifier Model Object represents an alternative identifier for an occurrence or name usage.
Identifier() - Constructor for class org.gbif.api.model.common.Identifier
 
Identifier - Class in org.gbif.api.model.registry
 
Identifier() - Constructor for class org.gbif.api.model.registry.Identifier
 
Identifier(IdentifierType, String) - Constructor for class org.gbif.api.model.registry.Identifier
 
IdentifierService - Interface in org.gbif.api.service.checklistbank
Service interface for Identifier methods.
IdentifierService - Interface in org.gbif.api.service.registry
 
IdentifierType - Enum in org.gbif.api.vocabulary
Enumeration for all possible identifier types.
IdentifierUtils - Class in org.gbif.api.util
This class contains utility methods for identifiers.
IdentifierUtils() - Constructor for class org.gbif.api.util.IdentifierUtils
 
IdentityAccessService - Interface in org.gbif.api.service.common
Identity service accessing a single user, in read-only.
implies(Subject) - Method in class org.gbif.api.model.common.AppPrincipal
 
increase(String) - Static method in class org.gbif.utils.text.StringUtils
Increase a given string by 1, i.e.
inferFrom(String) - Static method in enum org.gbif.api.vocabulary.IdentifierType
Tries to infer the identifier type from a given identifier.
inferType(String) - Static method in enum org.gbif.api.vocabulary.ContactType
Tries its best to infer a ContactType from a given string.
initialize(HttpURI) - Method in class org.gbif.api.util.URIValidator
Initializes the validator in preparation for ConstraintValidator.isValid(Object, javax.validation.ConstraintValidatorContext) calls.
InPredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate checks if its key contains any of its values.
InPredicate(OccurrenceSearchParameter, Collection<String>) - Constructor for class org.gbif.api.model.occurrence.predicate.InPredicate
 
InputStreamUtils - Class in org.gbif.utils.file
 
InputStreamUtils() - Constructor for class org.gbif.utils.file.InputStreamUtils
 
insertMetadata(UUID, InputStream) - Method in interface org.gbif.api.service.registry.DatasetService
Inserts a metadata document, replacing any previously existing document of the same type.
Installation - Class in org.gbif.api.model.registry
A technical installation which can serve dataset(s).
Installation() - Constructor for class org.gbif.api.model.registry.Installation
 
InstallationPager - Class in org.gbif.api.util.iterables
Iterates over all datasets hosted by a given installation.
InstallationPager(InstallationService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.InstallationPager
 
installations(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NodeService
Provides the installations that are registered to organizations with an approved endorsement from the node.
installations(UUID, Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService
Provides paging service to list installations for the organization.
InstallationService - Interface in org.gbif.api.service.registry
 
InstallationType - Enum in org.gbif.api.vocabulary
Enumeration for all possible technical installation types.
instance() - Static method in class org.gbif.dwc.terms.TermFactory
 
institutionCode(String) - Method in class org.gbif.api.model.metrics.RecordError.Builder
Deprecated.
 
InterpretationRemark - Interface in org.gbif.api.vocabulary
Represents a remark flagged during the interpretation phase.
InterpretationRemarkSeverity - Enum in org.gbif.api.vocabulary
Severity of an InterpretationRemark.
InterpretedEnum<V,I extends Enum<I>> - Class in org.gbif.api.model.common
Deprecated.
InterpretedEnum() - Constructor for class org.gbif.api.model.common.InterpretedEnum
Deprecated.
 
InterpretedEnum(V, I) - Constructor for class org.gbif.api.model.common.InterpretedEnum
Deprecated.
 
InterpretedField<V,I> - Class in org.gbif.api.model.common
Deprecated.
InterpretedField() - Constructor for class org.gbif.api.model.common.InterpretedField
Deprecated.
 
InterpretedField(V, I) - Constructor for class org.gbif.api.model.common.InterpretedField
Deprecated.
 
interpretedOccurrencesPersistedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
interpretedOccurrencesPersistedSuccessful(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
intToByteArray(int) - Static method in class org.gbif.utils.collection.ArrayUtils
 
IS_GEOREFERENCED - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
 
isAccepted() - Method in enum org.gbif.api.vocabulary.TaxonomicStatus
 
isAdmin() - Method in class org.gbif.api.model.common.User
Deprecated.
 
isAllRecordsChecked() - Method in class org.gbif.api.model.crawler.GenericValidationReport
 
isAllRecordsChecked() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
isAuthorsParsed() - Method in class org.gbif.api.model.checklistbank.ParsedName
Name parsing is not always easy and parsing the authorship can be the hardest part.
isAutonym() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
isAvailable() - Method in class org.gbif.api.model.occurrence.Download
 
isBackboneType() - Method in enum org.gbif.api.vocabulary.NameType
 
isBad() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus
Opposite of good and not doubtful.
isBinomial() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
isClass() - Method in enum org.gbif.dwc.terms.DcElement
 
isClass() - Method in enum org.gbif.dwc.terms.DcTerm
 
isClass() - Method in enum org.gbif.dwc.terms.DwcTerm
 
isClass() - Method in enum org.gbif.dwc.terms.GbifTerm
 
isClass() - Method in enum org.gbif.dwc.terms.IucnTerm
 
isCompressedFile(File) - Static method in class org.gbif.utils.file.FileUtils
 
isConcrete() - Method in enum org.gbif.api.vocabulary.License
Indicates if a license is a concrete license (true) or an abstracted license (false) like UNSPECIFIED or UNSUPPORTED.
isCorrectlySpelled() - Method in class org.gbif.api.model.common.search.SpellCheckResponse
 
isCustomCode(String) - Static method in enum org.gbif.api.vocabulary.Country
 
isDeprecated() - Method in interface org.gbif.api.vocabulary.InterpretationRemark
Checks if the InterpretationRemark is deprecated or not.
isDeprecated() - Method in enum org.gbif.api.vocabulary.NameUsageIssue
 
isDeprecated() - Method in enum org.gbif.api.vocabulary.OccurrenceIssue
 
isDeprecated() - Method in enum org.gbif.dwc.terms.GbifTerm
 
isDisabled() - Method in class org.gbif.api.model.registry.Installation
 
isDoubtful() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus
 
isEmpty() - Method in class org.gbif.api.model.checklistbank.TableOfContents
 
isEmpty() - Method in class org.gbif.utils.collection.CompactHashSet
Returns true if this set contains no elements.
isEndOfRecords() - Method in class org.gbif.api.model.common.paging.PagingResponse
Flag indicating whether more records do exist.
isEndorsementApproved() - Method in class org.gbif.api.model.registry.Organization
 
isExtended() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
Allows to request an extended search object with the larger list properties: habitats nomenclaturalStatus threatStatuses descriptions vernacularNames If extended=false and highlighting is activated, the highlighted matches will still be added to the extended properties.
isExternal() - Method in class org.gbif.api.model.registry.Dataset
 
isExternalKey() - Method in class org.gbif.api.util.DatasetKey
 
isExtinct() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
Convenience method that analyzes all species profile records for extinct.
isExtinct() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
isExtinct() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
Flag indicating an extinct organism.
isFieldDeprecated(Class<?>, String) - Static method in class org.gbif.utils.AnnotationUtils
Check if a field is annotated with @Deprecated in the provided class.
isFreshwater() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
Convenience method that analyzes all species profile records for freshwater habitat flags.
isFreshwater() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
A Boolean flag indicating whether the taxon is a freshwater organism.
isGlobalCoverage() - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
 
isGood() - Method in enum org.gbif.api.vocabulary.NomenclaturalStatus
A vague grouping of nomenclatural status terms including all that can be used to name a correct/valid taxon.
isHighlight() - Method in class org.gbif.api.model.common.search.SearchRequest
 
isHybrid() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
Flag indicating a hybrid organism.
isHybridFormula() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
isIndetermined() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
isInfrageneric() - Method in enum org.gbif.api.vocabulary.Rank
 
isInfraspecific() - Method in enum org.gbif.api.vocabulary.Rank
 
isInfrasubspecific() - Method in enum org.gbif.api.vocabulary.Rank
 
isLegacy() - Method in enum org.gbif.api.vocabulary.Rank
 
isLinnean() - Method in enum org.gbif.api.vocabulary.Rank
True for all mayor Linnéan ranks, ie kingdom,phylum,class,order,family,genus and species.
isLockedForAutoUpdate() - Method in class org.gbif.api.model.registry.Dataset
 
isMarine() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
Convenience method that analyzes all species profile records for marine habitat flags.
isMarine() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
A Boolean flag indicating whether the taxon is a marine organism, i.e.
isMultiSelectFacets() - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
 
IsNotNullPredicate - Class in org.gbif.api.model.occurrence.predicate
 
IsNotNullPredicate(OccurrenceSearchParameter) - Constructor for class org.gbif.api.model.occurrence.predicate.IsNotNullPredicate
 
isNub() - Method in class org.gbif.api.model.checklistbank.NameUsage
 
IsoDateParsingUtils - Class in org.gbif.api.util
Utility class that parses date values, the allowed date formats are: "yyyy-MM-dd", "yyyy-MM" or "yyyy".
IsoDateParsingUtils.IsoDateFormat - Enum in org.gbif.api.util
Enumerations with the allowed date formats by the occurrence search service.
IsoDeserializer() - Constructor for class org.gbif.api.vocabulary.Country.IsoDeserializer
 
isOfficial() - Method in enum org.gbif.api.vocabulary.Country
 
IsoSerializer() - Constructor for class org.gbif.api.vocabulary.Country.IsoSerializer
 
IsoSerializer() - Constructor for class org.gbif.api.vocabulary.Language.IsoSerializer
 
isParsable(String) - Static method in class org.gbif.api.model.common.DOI
Returns true only if the source can be parsed into a DOI.
isParsable() - Method in enum org.gbif.api.vocabulary.NameType
 
isParsableType() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
isParsed() - Method in class org.gbif.api.model.checklistbank.ParsedName
A flag indicating if a name could not be parsed at all.
isPlural() - Method in class org.gbif.api.model.checklistbank.VernacularName
This value is true if the vernacular name it qualifies refers to a plural form of the name.
isPreferred() - Method in class org.gbif.api.model.checklistbank.VernacularName
This term is true if the source citing the use of this vernacular name indicates the usage has some preference or specific standing over other possible vernacular names used for the species.
isPrimary() - Method in class org.gbif.api.model.registry.Contact
 
isProParte() - Method in class org.gbif.api.model.checklistbank.NameUsage
True for pro parte synonyms with multiple accepted usages.
isQualified() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
isRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator
Determines whether the value given is a valid decimal or date range, delimiting two values by a comma.
isRecombination() - Method in class org.gbif.api.model.checklistbank.ParsedName
 
isRegistered() - Method in enum org.gbif.api.model.common.DoiStatus
 
isRestrictedToCode() - Method in enum org.gbif.api.vocabulary.Rank
 
isSpeciesOrBelow() - Method in enum org.gbif.api.vocabulary.Rank
 
isSpellCheck() - Method in class org.gbif.api.model.common.search.SearchRequest
 
ISSUE - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
 
isSuprageneric() - Method in enum org.gbif.api.vocabulary.Rank
 
isSupraspecific() - Method in enum org.gbif.api.vocabulary.Rank
 
isSynonym() - Method in class org.gbif.api.model.checklistbank.NameUsage
Convenience method using the taxonomicStatus field.
isSynonym() - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
isSynonym() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
Convenience method using the taxonomicStatus field.
isSynonym() - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
isSynonym() - Method in enum org.gbif.api.vocabulary.TaxonomicStatus
 
isTermValueBlank(String) - Static method in class org.gbif.dwc.terms.Terms
Check if the value provided should be considered "blank" in the context of a Term value.
isTerrestrial() - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
Convenience method that analyzes all species profile records for terrestrial habitat flags.
isTerrestrial() - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
A Boolean flag indicating the taxon is a terrestial organism, i.e.
isTypeSpecimen() - Method in enum org.gbif.api.vocabulary.TypeStatus
 
isUncomparable() - Method in enum org.gbif.api.vocabulary.Rank
True for names of informal ranks that represent a range of ranks really and therefore cannot safely be compared to other ranks in all cases.
isValid() - Method in class org.gbif.api.model.crawler.DwcaValidationReport
 
isValid() - Method in class org.gbif.api.model.crawler.GenericValidationReport
 
isValid() - Method in class org.gbif.api.model.crawler.OccurrenceValidationReport
 
isValid(URI, ConstraintValidatorContext) - Method in class org.gbif.api.util.URIValidator
Implements the validation logic, checking if a URI is valid or not.
isValidDate(String) - Method in enum org.gbif.api.util.IsoDateParsingUtils.IsoDateFormat
Checks if the parameter "value" can be parsed using the date format.
iterable(Iterator<T>) - Static method in class org.gbif.utils.collection.IterableUtils
Converts an interator into an Iterable for one time use only.
Iterables - Class in org.gbif.api.util.iterables
Factory constructing registry entity iterables using specific pagers under the hood.
IterableUtils - Class in org.gbif.utils.collection
 
IterableUtils() - Constructor for class org.gbif.utils.collection.IterableUtils
 
iterator() - Method in class org.gbif.utils.collection.CompactHashSet
Returns an iterator over the elements in this set.
IucnTerm - Enum in org.gbif.dwc.terms
 

J

joinIfNotNull(String, Object...) - Static method in class org.gbif.utils.text.StringUtils
Joins a list of objects into a string, skipping null values and calling toString on each object.

K

KeyTitleResult - Class in org.gbif.api.model.registry.search
A utility container for holding only the title and key of an entity.
KeyTitleResult() - Constructor for class org.gbif.api.model.registry.search.KeyTitleResult
 
KeyTitleResult(UUID, String) - Constructor for class org.gbif.api.model.registry.search.KeyTitleResult
 
KeywordCollection - Class in org.gbif.api.model.registry.eml
Allows a collection of keywords which may declare a thesaurus from which they come from.
KeywordCollection() - Constructor for class org.gbif.api.model.registry.eml.KeywordCollection
 
KeywordCollection(String, Set<String>) - Constructor for class org.gbif.api.model.registry.eml.KeywordCollection
 
Keywords - Interface in org.gbif.api.model.registry.eml
 
Kingdom - Enum in org.gbif.api.vocabulary
A simple enumeration of all kingdoms found in the GBIF Backbone Taxonomy and also Catalogue of Life.

L

Language - Enum in org.gbif.api.vocabulary
Enumeration for all ISO 639-1 language codes using 2 lower case letters.
Language.IsoSerializer - Class in org.gbif.api.vocabulary
Serializes the value in a 3 letter ISO format.
Language.LenientDeserializer - Class in org.gbif.api.vocabulary
Deserializes the value from a 3 letter ISO format or the enumeration name itself to maintain as much backwards compatibility as possible with e.g.
LANGUAGES - Static variable in enum org.gbif.api.vocabulary.Language
 
LAT_DEGREE_IN_METER - Static variable in class org.gbif.api.util.LengthUtils
 
latDegreeToMeters(double) - Static method in class org.gbif.api.util.LengthUtils
Latitude degrees are roughly linear to meters on the earth spheroid.
LengthUtils - Class in org.gbif.api.util
 
LengthUtils() - Constructor for class org.gbif.api.util.LengthUtils
 
LenientDeserializer() - Constructor for class org.gbif.api.vocabulary.Language.LenientDeserializer
 
lenientEquals(Comment) - Method in class org.gbif.api.model.registry.Comment
A lenient equality check ignoring server side fields.
lenientEquals(Contact) - Method in class org.gbif.api.model.registry.Contact
This implementation of the Contact.equals(Object) method does only check business equality and disregards automatically set and maintained fields like createdBy, key and others.
lenientEquals(Dataset) - Method in class org.gbif.api.model.registry.Dataset
Only checks the persisted properties, excluding the server controlled fields (key, created, license etc).
lenientEquals(Endpoint) - Method in class org.gbif.api.model.registry.Endpoint
Does not include server controlled values, or nested properties.
lenientEquals(Identifier) - Method in class org.gbif.api.model.registry.Identifier
A lenient equality check ignoring server controlled values (createdBy, key etc).
lenientEquals(Installation) - Method in class org.gbif.api.model.registry.Installation
Does not include the nested properties, or server controlled values (key, createdBy etc) or the password, for security reasons.
LenientEquals<T> - Interface in org.gbif.api.model.registry
An interface to allow model objects to offer a consistent lenient equality check.
lenientEquals(T) - Method in interface org.gbif.api.model.registry.LenientEquals
Leniently tests if the objects are the same.
lenientEquals(MachineTag) - Method in class org.gbif.api.model.registry.MachineTag
This implementation of the MachineTag.equals(Object) method does only check business equality and disregards automatically set and maintained fields like createdBy, key and possibly others in the future.
lenientEquals(Metadata) - Method in class org.gbif.api.model.registry.Metadata
Does not include the key or server controlled values (created, createdBy etc).
lenientEquals(Network) - Method in class org.gbif.api.model.registry.Network
Tests persisted fields, excluding the server controlled values such as key and createdBy.
lenientEquals(Node) - Method in class org.gbif.api.model.registry.Node
Compares the entities for business logic equality using a very lenient approach.
lenientEquals(Organization) - Method in class org.gbif.api.model.registry.Organization
A lenient equality check for business logic uniqueness.
lenientEquals(Tag) - Method in class org.gbif.api.model.registry.Tag
A lenient test that returns true if they are the same object or have the same value.
LessThanOrEqualsPredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate checks if its key is less or equal than its value.
LessThanOrEqualsPredicate(OccurrenceSearchParameter, String) - Constructor for class org.gbif.api.model.occurrence.predicate.LessThanOrEqualsPredicate
 
LessThanPredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate checks if its key is less than its value.
LessThanPredicate(OccurrenceSearchParameter, String) - Constructor for class org.gbif.api.model.occurrence.predicate.LessThanPredicate
 
License - Enum in org.gbif.api.vocabulary
Enumeration of the set of licenses GBIF supports for applying to a dataset.
LicenseJsonDeserializer() - Constructor for class org.gbif.api.jackson.LicenseSerde.LicenseJsonDeserializer
 
LicenseJsonSerializer() - Constructor for class org.gbif.api.jackson.LicenseSerde.LicenseJsonSerializer
 
LicenseSerde - Class in org.gbif.api.jackson
Jackson JsonSerializer and Jackson JsonDeserializer classes for License.
LicenseSerde() - Constructor for class org.gbif.api.jackson.LicenseSerde
 
LicenseSerde.LicenseJsonDeserializer - Class in org.gbif.api.jackson
Jackson JsonDeserializer for License.
LicenseSerde.LicenseJsonSerializer - Class in org.gbif.api.jackson
Jackson JsonSerializer for License.
LifeStage - Enum in org.gbif.api.vocabulary
Vocabulary for the life stage of an organism regardless of its kingdom.
LikePredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate checks if its key is LIKE its value.
LikePredicate(OccurrenceSearchParameter, String) - Constructor for class org.gbif.api.model.occurrence.predicate.LikePredicate
 
LineComparator - Class in org.gbif.utils.text
A comparator for delimited lines that compares the content of a given column number for all rows.
LineComparator(int, String) - Constructor for class org.gbif.utils.text.LineComparator
 
LineComparator(int, String, Character) - Constructor for class org.gbif.utils.text.LineComparator
 
LineComparator(int, String, Character, Comparator<String>) - Constructor for class org.gbif.utils.text.LineComparator
 
LineComparator(int, String, Comparator<String>) - Constructor for class org.gbif.utils.text.LineComparator
 
LINNEAN_RANKS - Static variable in enum org.gbif.api.vocabulary.Rank
All main Linnean ranks ordered.
LINNEAN_YEAR - Static variable in class org.gbif.utils.text.StringUtils
 
LinneanClassification - Interface in org.gbif.api.model.common
A flat taxonomic classification using the major, Linnean ranks with verbatim names.
LinneanClassificationKeys - Interface in org.gbif.api.model.common
A flat taxonomic classification using the major, Linnean ranks with verbatim names and integer based keys.
list(UUID) - Method in interface org.gbif.api.service.checklistbank.DatasetMetricsService
 
list(Locale, UUID, String, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Page through all usages across all or one checklists.
list(Pageable) - Method in interface org.gbif.api.service.common.CrudService
Lists all entity.
list(Pageable) - Method in interface org.gbif.api.service.registry.NetworkEntityService
Used to retrieve a list of network entities.
list(Pageable, Set<Download.Status>) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService
Retrieves a pageable result of all the downloads, optionally the downloads can be filtered by status.
list(MachineTaggable, TagName) - Static method in class org.gbif.api.util.MachineTagUtils
 
list(MachineTaggable, String, String) - Static method in class org.gbif.api.util.MachineTagUtils
 
list(Class, String) - Static method in class org.gbif.utils.file.ResourcesUtil
List directory contents for a resource folder.
listAbortedDatasetProcesses(Pageable) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService
Retrieves a pageable result of all dataset processing statuses that have been aborted in their latest crawl
listActiveCountries() - Method in interface org.gbif.api.service.registry.NodeService
Returns those countries considered active in GBIF.
listByCanonicalName(Locale, String, Pageable, UUID...) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Page through all usages with a given canonical name across all or some checklists.
listByCountry(Country, DatasetType, Pageable) - Method in interface org.gbif.api.service.registry.DatasetService
Provides paging service to list datasets published, i.e.
listByCountry(Country, Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService
Provides access to all organizations from a country.
listByDataset(UUID, Pageable) - Method in interface org.gbif.api.service.registry.DatasetOccurrenceDownloadUsageService
Retrieves a pageable result of the downloads which contain data taken from a dataset.
listByDOI(String, Pageable) - Method in interface org.gbif.api.service.registry.DatasetService
Get a Dataset list from a DOI.
listByGroup(String) - Static method in enum org.gbif.dwc.terms.DwcTerm
List all terms that belong to a given group.
listByGroup(String) - Static method in enum org.gbif.dwc.terms.GbifTerm
List all terms that belong to a given group.
listByIdentifier(IdentifierType, String, Pageable) - Method in interface org.gbif.api.service.registry.NetworkEntityService
Lists the entities by the provided identifier, scoped by type.
listByIdentifier(String, Pageable) - Method in interface org.gbif.api.service.registry.NetworkEntityService
Lists the entities by the provided identifier, which may be of any type.
listByPrefix(MachineTaggable, String, String) - Static method in class org.gbif.api.util.MachineTagUtils
 
listByType(DatasetType, Pageable) - Method in interface org.gbif.api.service.registry.DatasetService
Provides paging service to list datasets published filtered by a particular dataset type.
listByUsage(int, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageExtensionService
Returns all extension records for a checklist usage.
listByUser(String, Pageable, Set<Download.Status>) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService
Retrieves a pageable result of the downloads created by a user in a given status.
listChildren(int, Locale, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Lists all accepted child name usages for a given parent.
listCombinations(int, Locale) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Lists all combinations or names at different rank that are based on this basionym, i.e.
listComments(UUID) - Method in interface org.gbif.api.service.registry.CommentService
 
listConstituents(UUID, Pageable) - Method in interface org.gbif.api.service.registry.DatasetService
Pages through constituents of a dataset, i.e.
listConstituents(Pageable) - Method in interface org.gbif.api.service.registry.DatasetService
Pages through all constituent datasets, i.e.
listConstituents(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NetworkService
Pages through dataset constituents of a network, i.e.
listContacts(UUID) - Method in interface org.gbif.api.service.registry.ContactService
 
listDatasetProcessStatus(Pageable) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService
Retrieves a pageable result of all the dataset processing statuses.
listDatasetProcessStatus(UUID, Pageable) - Method in interface org.gbif.api.service.registry.DatasetProcessStatusService
Lists the DatasetProcessStatus of a dataset.
listDatasetsWithNoEndpoint(Pageable) - Method in interface org.gbif.api.service.registry.DatasetService
Provides access to internal (e.g.
listDatasetUsages(String, Pageable) - Method in interface org.gbif.api.service.registry.OccurrenceDownloadService
Retrieves a pageable result of the dataset usages in a occurrence download.
listDeleted(Pageable) - Method in interface org.gbif.api.service.registry.DatasetService
Provides access to deleted datasets.
listDeleted(Pageable) - Method in interface org.gbif.api.service.registry.InstallationService
Provides access to deleted installations.
listDeleted(Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService
Provides access to deleted organizations.
listDuplicates(Pageable) - Method in interface org.gbif.api.service.registry.DatasetService
Provides access to datasets that are marked as a duplicate of another.
listEndpoints(UUID) - Method in interface org.gbif.api.service.registry.EndpointService
 
listEnumerations(String) - Static method in class org.gbif.api.util.VocabularyUtils
Utility method to get a map of all enumerations within a package.
listIdentifiers(UUID) - Method in interface org.gbif.api.service.registry.IdentifierService
 
listLanguages() - Method in class org.gbif.api.model.checklistbank.TableOfContents
 
listMachineTags(UUID) - Method in interface org.gbif.api.service.registry.MachineTagService
 
listMetadata(UUID, MetadataType) - Method in interface org.gbif.api.service.registry.DatasetService
Lists all metadata descriptions available for a dataset and optionally filters them by document type.
listMetasync(Pageable) - Method in interface org.gbif.api.service.registry.MetasyncHistoryService
Retrieves a pageable result of all the metasync history records.
listMetasync(UUID, Pageable) - Method in interface org.gbif.api.service.registry.MetasyncHistoryService
Lists the MetasyncHistory of a installation.
listNetworks(UUID) - Method in interface org.gbif.api.service.registry.DatasetService
Lists all networks that this dataset is a constituent of.
listNodeCountries() - Method in interface org.gbif.api.service.registry.NodeService
Returns a list of all countries which do have a GBIF node.
listNonPublishing(Pageable) - Method in interface org.gbif.api.service.registry.InstallationService
Provides access to installations that serve no datasets.
listNonPublishing(Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService
Provides access to organizations that are not publishing (e.g.
listParents(int, Locale) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Lists the complete parental hierarchy of a name usage regardless of their ranks.
listPendingEndorsement(Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService
Provides access to organizations that are awaiting their endorsement approval.
listRelated(int, Locale, Pageable, UUID...) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Lists all related checklist usages for a given nub usage.
listRoot(UUID, Locale, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Lists all root usages for a given checklist, i.e.
listSynonyms(int, Locale, Pageable) - Method in interface org.gbif.api.service.checklistbank.NameUsageService
Lists all synonym name usages for a given accepted name usage.
listTags(UUID, String) - Method in interface org.gbif.api.service.registry.TagService
 
listTopicEntries(Language) - Method in class org.gbif.api.model.checklistbank.TableOfContents
 
loadProperties(String) - Static method in class org.gbif.utils.file.properties.PropertiesUtil
Loads a properties file.
lookup(String, Class<T>) - Static method in class org.gbif.api.util.VocabularyUtils
FIXME returning Guava Optional will cause issues, Java 8 Optional should be returned.
lookupEnum(String, Class<T>) - Static method in class org.gbif.api.util.VocabularyUtils
Generic method to lookup an enumeration value for a given string based on the name of the enum member.
lookupVocabulary(String) - Static method in class org.gbif.api.util.VocabularyUtils
Looks up an enumeration by class name.

M

MachineTag - Class in org.gbif.api.model.registry
A tag that has a namespace, name and a value.
MachineTag() - Constructor for class org.gbif.api.model.registry.MachineTag
 
MachineTag(String, String, String) - Constructor for class org.gbif.api.model.registry.MachineTag
This is the default constructor to create new Machine Tags which takes all user settable properties.
MachineTaggable - Interface in org.gbif.api.model.registry
Generic machine tag interface for entities.
MachineTagService - Interface in org.gbif.api.service.registry
 
MachineTagUtils - Class in org.gbif.api.util
Utility class to simplify your life when dealing with machine tags.
MaintenanceUpdateFrequency - Enum in org.gbif.api.vocabulary
Enumeration for describing the frequency with which changes and additions are made to the dataset after the initial dataset is completed.
MapEntryJsonDeserializer() - Constructor for class org.gbif.api.jackson.MapEntrySerde.MapEntryJsonDeserializer
 
MapEntryJsonSerializer() - Constructor for class org.gbif.api.jackson.MapEntrySerde.MapEntryJsonSerializer
 
MapEntrySerde - Class in org.gbif.api.jackson
Jackson Serializer and Deserializer for Map.Entry.
MapEntrySerde() - Constructor for class org.gbif.api.jackson.MapEntrySerde
 
MapEntrySerde.MapEntryJsonDeserializer - Class in org.gbif.api.jackson
 
MapEntrySerde.MapEntryJsonSerializer - Class in org.gbif.api.jackson
 
MapUtils - Class in org.gbif.utils.collection
 
match(String, Rank, LinneanClassification, boolean, boolean) - Method in interface org.gbif.api.service.checklistbank.NameUsageMatchingService
Tries to match a scientific name with an optional classification given as individual parameters.
MediaObject - Class in org.gbif.api.model.common
Metadata for a multimedia object representing an image, video or audio file.
MediaObject() - Constructor for class org.gbif.api.model.common.MediaObject
 
MediaType - Enum in org.gbif.api.vocabulary
Based on the DC types vocabulary.
mergedSortedFiles(List<File>, FileWriter, Comparator<String>) - Method in class org.gbif.utils.file.FileUtils
Merges a list of intermediary sort chunk files into a single sorted file.
message(String) - Method in class org.gbif.api.model.common.messaging.Response.Builder
 
messageKey(String) - Method in class org.gbif.api.model.common.messaging.Response.Builder
 
Metadata - Class in org.gbif.api.model.registry
 
Metadata() - Constructor for class org.gbif.api.model.registry.Metadata
 
MetadataType - Enum in org.gbif.api.vocabulary
Enumeration for all possible metadata types.
MetasyncHistory - Class in org.gbif.api.model.registry.metasync
Metadata synchronization historical information.
MetasyncHistory() - Constructor for class org.gbif.api.model.registry.metasync.MetasyncHistory
 
MetasyncHistoryService - Interface in org.gbif.api.service.registry
Interface to access and persists historical metadata synchronization results.
MetasyncResult - Enum in org.gbif.api.model.registry.metasync
Enumeration of all the different categories of results we want to report on during metadata synchronisation.
metersToLatDegree(double) - Static method in class org.gbif.api.util.LengthUtils
Latitude degrees are roughly linear to meters on the earth spheroid.
MultimediaService - Interface in org.gbif.api.service.checklistbank
The public interface providing methods for retrieving NameUsageMediaObjects.

N

name - Variable in exception org.gbif.api.exception.UnparsableException
 
name() - Method in interface org.gbif.api.model.common.search.SearchParameter
 
name - Variable in class org.gbif.utils.text.EmailUtils.EmailWithName
 
NamedThreadFactory - Class in org.gbif.utils.concurrent
Modified Executors DefaultThreadFactory to allow custom named thread pools.
NamedThreadFactory(String) - Constructor for class org.gbif.utils.concurrent.NamedThreadFactory
Creates a new named user thread factory using a normal priority.
NamedThreadFactory(String, int, boolean) - Constructor for class org.gbif.utils.concurrent.NamedThreadFactory
Creates a new named thread factory using explicit priority and daemon settings.
NameParser - Interface in org.gbif.api.service.checklistbank
Interface for parsing scientific names.
NamePart - Enum in org.gbif.api.vocabulary
Enumeration to indicate a part of a canonical scientific name.
NameType - Enum in org.gbif.api.vocabulary
A short classification of scientific name strings used in Checklist Bank.
nameTypeStatusList() - Static method in enum org.gbif.api.vocabulary.TypeStatus
 
NameUsage - Class in org.gbif.api.model.checklistbank
A usage of a scientific name according to one particular Checklist including the GBIF Taxonomic Backbone, the nub.
NameUsage() - Constructor for class org.gbif.api.model.checklistbank.NameUsage
 
NameUsageContainer - Class in org.gbif.api.model.checklistbank
An extension to a NameUsage adding all further properties that are not eagerly loaded.
NameUsageContainer() - Constructor for class org.gbif.api.model.checklistbank.NameUsageContainer
Default constructor.
NameUsageContainer(NameUsage) - Constructor for class org.gbif.api.model.checklistbank.NameUsageContainer
Constructs a NameUsageContainer from an existing NameUsage instance.
NameUsageExtension - Interface in org.gbif.api.model.checklistbank
 
NameUsageExtensionService<T> - Interface in org.gbif.api.service.checklistbank
Parameterized service interface for model classes extending a NameUsage.
NameUsageIssue - Enum in org.gbif.api.vocabulary
Enumeration of issues for each name usage record encountered during checklist processing.
NameUsageMatch - Class in org.gbif.api.model.checklistbank
The resulting lookup of a name usage match.
NameUsageMatch() - Constructor for class org.gbif.api.model.checklistbank.NameUsageMatch
 
NameUsageMatch.MatchType - Enum in org.gbif.api.model.checklistbank
 
NameUsageMatchingService - Interface in org.gbif.api.service.checklistbank
A lookup service that fuzzy matches classified scientific names against a body of names.
NameUsageMediaObject - Class in org.gbif.api.model.checklistbank
An extension to the common MediaObject that adds a source taxon key property from checklistbank.
NameUsageMediaObject() - Constructor for class org.gbif.api.model.checklistbank.NameUsageMediaObject
 
NameUsageMetrics - Class in org.gbif.api.model.checklistbank
Basic metrics for a single name usage.
NameUsageMetrics() - Constructor for class org.gbif.api.model.checklistbank.NameUsageMetrics
 
NameUsageSearchParameter - Enum in org.gbif.api.model.checklistbank.search
Each value in the enum represents a search parameter or facet of the name usage search.
NameUsageSearchRequest - Class in org.gbif.api.model.checklistbank.search
A name usage specific search request with convenience methods to add enum based search filters.
NameUsageSearchRequest() - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
NameUsageSearchRequest(Pageable) - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
NameUsageSearchRequest(long, int) - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
NameUsageSearchRequest.QueryField - Enum in org.gbif.api.model.checklistbank.search
 
NameUsageSearchResult - Class in org.gbif.api.model.checklistbank.search
Class used for returning results of a full text search operation.
NameUsageSearchResult() - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
NameUsageSearchService - Interface in org.gbif.api.service.checklistbank
Interface that provides search/suggest(autocomplete) operations over NameUsages.
NameUsageService - Interface in org.gbif.api.service.checklistbank
This is the public interface providing methods for retrieving name usages in general, no matter if nub or checklist usage.
NameUsageSuggestRequest - Class in org.gbif.api.model.checklistbank.search
A name usage specific suggest request.
NameUsageSuggestRequest() - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSuggestRequest
 
NameUsageSuggestResult - Class in org.gbif.api.model.checklistbank.search
Class used for returning results of a suggest operation.
NameUsageSuggestResult() - Constructor for class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
Network - Class in org.gbif.api.model.registry
A GBIF network.
Network() - Constructor for class org.gbif.api.model.registry.Network
 
networkDatasets(UUID, DatasetType, NetworkService) - Static method in class org.gbif.api.util.iterables.Iterables
Iterates over all constituents of a given network.
NetworkEntity - Interface in org.gbif.api.model.registry
This interface provides a minimal contract that all network entities (The readable version) will adhere to.
NetworkEntityService<T> - Interface in org.gbif.api.service.registry
 
NetworkPager - Class in org.gbif.api.util.iterables
Iterates over all datasets belonging to a given network.
NetworkPager(NetworkService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.NetworkPager
 
NetworkService - Interface in org.gbif.api.service.registry
 
newInstance(String, String, String) - Static method in class org.gbif.api.model.registry.MachineTag
 
newTabularFileReader(Reader, char, String, Character, boolean) - Static method in class org.gbif.utils.file.tabular.TabularFiles
Get a new TabularDataFileReader.
newTabularFileReader(Reader, char, String, Character, boolean, Integer) - Static method in class org.gbif.utils.file.tabular.TabularFiles
Get a new TabularDataFileReader.
newTabularFileReader(Reader, char, boolean) - Static method in class org.gbif.utils.file.tabular.TabularFiles
Get a new TabularDataFileReader using default quote char (") and default endOfLineSymbols (\n).
newThread(Runnable) - Method in class org.gbif.utils.concurrent.NamedThreadFactory
 
next() - Method in class org.gbif.utils.file.csv.CSVReader
 
nextPage() - Method in class org.gbif.api.model.common.paging.PagingRequest
Increases the offset based on the current limit to be able to request the next page.
Node - Class in org.gbif.api.model.registry
A GBIF participant node.
Node() - Constructor for class org.gbif.api.model.registry.Node
 
NodeDatasetPager - Class in org.gbif.api.util.iterables
Pages through all datasets endorsed by a given node.
NodeDatasetPager(NodeService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.NodeDatasetPager
 
NodeOrganizationPager - Class in org.gbif.api.util.iterables
Pages through all organizations endorsed by a given node.
NodeOrganizationPager(NodeService, UUID, int) - Constructor for class org.gbif.api.util.iterables.NodeOrganizationPager
 
NodePager - Class in org.gbif.api.util.iterables
Pages through all organizations optionally filtering by country.
NodePager(NodeService, int) - Constructor for class org.gbif.api.util.iterables.NodePager
 
nodes(NodeService) - Static method in class org.gbif.api.util.iterables.Iterables
Iterate over all endorsing nodes
NodeService - Interface in org.gbif.api.service.registry
Actions on a GBIF node.
NodeType - Enum in org.gbif.api.vocabulary
Enumeration for all possible node types.
NomenclaturalCode - Enum in org.gbif.api.vocabulary
Enumeration representing the different nomenclatoral codes found in biology for scientific names.
NomenclaturalStatus - Enum in org.gbif.api.vocabulary
Vocabulary for the nomenclatural status of a name.
normaliseTerm(String) - Static method in class org.gbif.dwc.terms.TermFactory
 
normaliseTerm(String, boolean) - Static method in class org.gbif.dwc.terms.TermFactory
 
NORMALIZED_END_OF_LINE - Static variable in class org.gbif.utils.file.tabular.TabularFileNormalizer
 
normalizeFile(Path, Path, Charset, char, String, Character) - Static method in class org.gbif.utils.file.tabular.TabularFileNormalizer
Normalizes the provided tabular "file" (provided as Reader to let the caller deal with charset).
normAlts - Variable in enum org.gbif.dwc.terms.DwcTerm
 
normAlts - Variable in enum org.gbif.dwc.terms.GbifTerm
 
normAlts - Variable in enum org.gbif.dwc.terms.IucnTerm
 
normQName - Variable in enum org.gbif.dwc.terms.DwcTerm
 
notOtherOrUnknown() - Method in enum org.gbif.api.vocabulary.Rank
 
NotPredicate - Class in org.gbif.api.model.occurrence.predicate
This predicate negates its subpredicate.
NotPredicate(Predicate) - Constructor for class org.gbif.api.model.occurrence.predicate.NotPredicate
 
NS - Static variable in enum org.gbif.dwc.terms.AcTerm
 
NS - Static variable in enum org.gbif.dwc.terms.DcElement
 
NS - Static variable in enum org.gbif.dwc.terms.DcTerm
 
NS - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
NS - Static variable in enum org.gbif.dwc.terms.EolReferenceTerm
 
NS - Static variable in enum org.gbif.dwc.terms.GbifInternalTerm
 
NS - Static variable in enum org.gbif.dwc.terms.GbifTerm
 
NS - Static variable in enum org.gbif.dwc.terms.IucnTerm
 
NS - Static variable in enum org.gbif.dwc.terms.XmpRightsTerm
 
NS - Static variable in enum org.gbif.dwc.terms.XmpTerm
 
NUB_DATASET_KEY - Static variable in class org.gbif.api.model.Constants
The dataset key for the GBIF backbone (nub) taxonomy.
NUB_MAXIMUM_KEY - Static variable in class org.gbif.api.model.Constants
The maximum key for a nub usage.
NUB_NETWORK_KEY - Static variable in class org.gbif.api.model.Constants
The network key for the GBIF backbone sources.
nubUsageID() - Method in enum org.gbif.api.vocabulary.Kingdom
Deprecated.
please use nubUsageKey() instead
nubUsageKey() - Method in enum org.gbif.api.vocabulary.Kingdom
 

O

ObjectUtils - Class in org.gbif.utils
 
Occurrence - Class in org.gbif.api.model.occurrence
Represents an Occurrence as interpreted by GBIF, adding typed properties on top of the verbatim ones.
Occurrence() - Constructor for class org.gbif.api.model.occurrence.Occurrence
 
Occurrence(VerbatimOccurrence) - Constructor for class org.gbif.api.model.occurrence.Occurrence
Create occurrence instance from existing verbatim one, copying over all data.
OCCURRENCE_DATASET_SUBTYPES - Static variable in enum org.gbif.api.vocabulary.DatasetSubtype
A set of all DatasetSubtype that belong to DatasetType OCCURRENCE.
OccurrenceCountryIndexService - Interface in org.gbif.api.service.occurrence
Supports the listing of countries having occurrence records.
OccurrenceCube - Class in org.gbif.api.model.metrics.cube
The occurrence cube dimension definitions and the way in which they are rolled up into counts.
OccurrenceDatasetIndexService - Interface in org.gbif.api.service.occurrence
Supports the listing of datasets having occurrence records.
occurrenceDatasetsForCountry(Country) - Method in interface org.gbif.api.service.occurrence.OccurrenceDatasetIndexService
This provides a map of occurrence dataset keys to the number of records matching the given country.
occurrenceDatasetsForNubKey(int) - Method in interface org.gbif.api.service.occurrence.OccurrenceDatasetIndexService
This provides a map of occurrence dataset keys to the number of records matching the given nub key.
OccurrenceDistributionIndexService - Interface in org.gbif.api.service.occurrence
Supports listing occurrence counts by known dimensions.
OccurrenceDownloadService - Interface in org.gbif.api.service.registry
Interface to access and persists information about occurrence download events.
OccurrenceIssue - Enum in org.gbif.api.vocabulary
An enumeration of validation rules for single occurrence records.
OccurrencePersistenceStatus - Enum in org.gbif.api.vocabulary
These are the possible states of an Occurrence as it moves through the processing and persistence chain.
OccurrenceRelation - Class in org.gbif.api.model.occurrence
Occurrence relations based on the dwc:ResourceRelationship model.
OccurrenceRelation() - Constructor for class org.gbif.api.model.occurrence.OccurrenceRelation
 
OccurrenceSchemaType - Enum in org.gbif.api.vocabulary
The slightly simplified standard schemas that a crawled occurrence record could be built in.
OccurrenceSearchParameter - Enum in org.gbif.api.model.occurrence.search
Supported query parameters by the occurrence search and download service.
OccurrenceSearchRequest - Class in org.gbif.api.model.occurrence.search
Request class for issuing search request to the occurrence search service.
OccurrenceSearchRequest() - Constructor for class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
OccurrenceSearchRequest(long, int) - Constructor for class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
OccurrenceSearchRequest(Pageable) - Constructor for class org.gbif.api.model.occurrence.search.OccurrenceSearchRequest
 
OccurrenceSearchService - Interface in org.gbif.api.service.occurrence
Interface that provides search operations over Occurrences.
OccurrenceService - Interface in org.gbif.api.service.occurrence
 
OccurrenceStatus - Enum in org.gbif.api.vocabulary
A statement about the presence or absence of a Taxon at a Location.
OccurrenceValidationReport - Class in org.gbif.api.model.crawler
The rules followed here should match the document at: http://dev.gbif.org/wiki/display/INT/Identifier+problems+and+how+to+solve+them.
OccurrenceValidationReport(int, int, int, int, int, boolean) - Constructor for class org.gbif.api.model.crawler.OccurrenceValidationReport
 
OFFICIAL_COUNTRIES - Static variable in enum org.gbif.api.vocabulary.Country
 
operationType(Request.OperationType) - Method in class org.gbif.api.model.common.messaging.Request.Builder
 
org.gbif.api.exception - package org.gbif.api.exception
 
org.gbif.api.jackson - package org.gbif.api.jackson
 
org.gbif.api.model - package org.gbif.api.model
 
org.gbif.api.model.checklistbank - package org.gbif.api.model.checklistbank
 
org.gbif.api.model.checklistbank.search - package org.gbif.api.model.checklistbank.search
 
org.gbif.api.model.common - package org.gbif.api.model.common
 
org.gbif.api.model.common.messaging - package org.gbif.api.model.common.messaging
 
org.gbif.api.model.common.paging - package org.gbif.api.model.common.paging
 
org.gbif.api.model.common.search - package org.gbif.api.model.common.search
 
org.gbif.api.model.crawler - package org.gbif.api.model.crawler
 
org.gbif.api.model.metrics - package org.gbif.api.model.metrics
 
org.gbif.api.model.metrics.cube - package org.gbif.api.model.metrics.cube
Provides the classes necessary to construct read only requests to well defined cubes.
org.gbif.api.model.occurrence - package org.gbif.api.model.occurrence
 
org.gbif.api.model.occurrence.predicate - package org.gbif.api.model.occurrence.predicate
 
org.gbif.api.model.occurrence.search - package org.gbif.api.model.occurrence.search
 
org.gbif.api.model.registry - package org.gbif.api.model.registry
 
org.gbif.api.model.registry.eml - package org.gbif.api.model.registry.eml
 
org.gbif.api.model.registry.eml.curatorial - package org.gbif.api.model.registry.eml.curatorial
 
org.gbif.api.model.registry.eml.geospatial - package org.gbif.api.model.registry.eml.geospatial
 
org.gbif.api.model.registry.eml.temporal - package org.gbif.api.model.registry.eml.temporal
 
org.gbif.api.model.registry.metasync - package org.gbif.api.model.registry.metasync
 
org.gbif.api.model.registry.search - package org.gbif.api.model.registry.search
 
org.gbif.api.service.checklistbank - package org.gbif.api.service.checklistbank
 
org.gbif.api.service.common - package org.gbif.api.service.common
 
org.gbif.api.service.crawler - package org.gbif.api.service.crawler
 
org.gbif.api.service.metrics - package org.gbif.api.service.metrics
 
org.gbif.api.service.occurrence - package org.gbif.api.service.occurrence
 
org.gbif.api.service.registry - package org.gbif.api.service.registry
 
org.gbif.api.util - package org.gbif.api.util
 
org.gbif.api.util.formatter - package org.gbif.api.util.formatter
 
org.gbif.api.util.iterables - package org.gbif.api.util.iterables
 
org.gbif.api.vocabulary - package org.gbif.api.vocabulary
 
org.gbif.dwc.terms - package org.gbif.dwc.terms
 
org.gbif.dwc.terms.jackson - package org.gbif.dwc.terms.jackson
 
org.gbif.utils - package org.gbif.utils
 
org.gbif.utils.collection - package org.gbif.utils.collection
 
org.gbif.utils.concurrent - package org.gbif.utils.concurrent
 
org.gbif.utils.file - package org.gbif.utils.file
 
org.gbif.utils.file.csv - package org.gbif.utils.file.csv
 
org.gbif.utils.file.properties - package org.gbif.utils.file.properties
 
org.gbif.utils.file.tabular - package org.gbif.utils.file.tabular
 
org.gbif.utils.html - package org.gbif.utils.html
 
org.gbif.utils.number - package org.gbif.utils.number
 
org.gbif.utils.rs - package org.gbif.utils.rs
 
org.gbif.utils.text - package org.gbif.utils.text
 
Organization - Class in org.gbif.api.model.registry
A GBIF data publisher.
Organization() - Constructor for class org.gbif.api.model.registry.Organization
 
OrganizationPager - Class in org.gbif.api.util.iterables
Pages through all organizations optionally filtering by country.
OrganizationPager(OrganizationService, Country, int) - Constructor for class org.gbif.api.util.iterables.OrganizationPager
 
organizations(Country, OrganizationService) - Static method in class org.gbif.api.util.iterables.Iterables
 
OrganizationService - Interface in org.gbif.api.service.registry
 
OrgHostingPager - Class in org.gbif.api.util.iterables
Iterates over all datasets hosted by a given organisation.
OrgHostingPager(OrganizationService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.OrgHostingPager
 
OrgPublishingPager - Class in org.gbif.api.util.iterables
Iterates over all datasets published by a given organisation.
OrgPublishingPager(OrganizationService, UUID, DatasetType, int) - Constructor for class org.gbif.api.util.iterables.OrgPublishingPager
 
Origin - Enum in org.gbif.api.vocabulary
Enumeration to classify name usages by how they originated.

P

Pageable - Interface in org.gbif.api.model.common.paging
Most simple paging interface for both request and responses.
PageableBase - Class in org.gbif.api.model.common.paging
Generically is a class that contains attributes used by operations that are aware of pagination.
pagesCrawled(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
pagesFragmentedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
pagesFragmentedSuccessful(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
PagingConstants - Class in org.gbif.api.model.common.paging
Paging constants.
PagingRequest - Class in org.gbif.api.model.common.paging
 
PagingRequest() - Constructor for class org.gbif.api.model.common.paging.PagingRequest
 
PagingRequest(Pageable) - Constructor for class org.gbif.api.model.common.paging.PagingRequest
 
PagingRequest(long, int) - Constructor for class org.gbif.api.model.common.paging.PagingRequest
 
PagingResponse<T> - Class in org.gbif.api.model.common.paging
Paging response bean.
PagingResponse() - Constructor for class org.gbif.api.model.common.paging.PagingResponse
Default constructor with default paging values.
PagingResponse(Pageable) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
 
PagingResponse(Pageable, Long) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
 
PagingResponse(long, int) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
 
PagingResponse(Pageable, Long, List<T>) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
 
PagingResponse(long, int, Long) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
 
PagingResponse(long, int, Long, List<T>) - Constructor for class org.gbif.api.model.common.paging.PagingResponse
 
PARAM_LIMIT - Static variable in class org.gbif.api.model.common.paging.PagingConstants
Limit param name.
PARAM_OFFSET - Static variable in class org.gbif.api.model.common.paging.PagingConstants
Offset param name.
parse(String, Rank) - Method in interface org.gbif.api.service.checklistbank.NameParser
Fully parse the supplied name also trying to extract authorships, a conceptual sec reference, remarks or notes on the nomenclatural status.
parse(String) - Method in interface org.gbif.api.service.checklistbank.NameParser
Delegate method to parse a scientific name of unknown rank.
parseBoolean(String) - Static method in class org.gbif.utils.text.StringUtils
Simple boolean parsing method that understands yes,y,true,t or 1 as true and respective values for false.
parseContactType(String) - Static method in class org.gbif.api.util.VocabularyUtils
 
parseDate(String) - Method in enum org.gbif.api.util.IsoDateParsingUtils.IsoDateFormat
Try to parse a string with the current date format.
parseDate(String) - Static method in class org.gbif.api.util.IsoDateParsingUtils
Parses a single date value.
parseDateRange(String) - Static method in class org.gbif.api.util.IsoDateParsingUtils
Parses a range of dates.
parseDateRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator
Parses a range of ISO dates.
parseDecimalRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator
Parses a decimal range in the format 123.1,456.
ParsedName - Class in org.gbif.api.model.checklistbank
A container of a taxon name that is atomised into it's relevant separate parts.
ParsedName() - Constructor for class org.gbif.api.model.checklistbank.ParsedName
 
ParsedName(NameType, String, String, String, String, NamePart, Rank, String, String, String, String, String, String, String, String, String) - Constructor for class org.gbif.api.model.checklistbank.ParsedName
 
ParsedNameService - Interface in org.gbif.api.service.checklistbank
ChecklistBank service dealing with parsed names.
parseEmail(String) - Static method in class org.gbif.utils.text.EmailUtils
 
parseEndpointType(String) - Static method in class org.gbif.api.util.VocabularyUtils
 
parseIdentifierType(String) - Static method in class org.gbif.api.util.VocabularyUtils
 
parseInteger(String) - Static method in class org.gbif.utils.text.StringUtils
Simple integer parsing method that does not throw any exception but returns null instead.
parseIntegerRange(String) - Static method in class org.gbif.api.util.SearchTypeValidator
Parses an integer range in the format 123,456
parseQuietly(String, Rank) - Method in interface org.gbif.api.service.checklistbank.NameParser
Fully parses a name using #parse(String, Rank) but converts names that throw a UnparsableException into ParsedName objects with the scientific name, rank and name type given.
parseQuietly(String) - Method in interface org.gbif.api.service.checklistbank.NameParser
Delegate method to parse a scientific name of unknown rank quietly.
parseTechnicalInstallationType(String) - Static method in class org.gbif.api.util.VocabularyUtils
 
parseToCanonical(String, Rank) - Method in interface org.gbif.api.service.checklistbank.NameParser
Parses the scientific name without authorship and returns the ParsedName.canonicalName() string
parseToCanonical(String) - Method in interface org.gbif.api.service.checklistbank.NameParser
Delegate method to parse a scientific name of unknown rank and return its canonical form.
ParticipationStatus - Enum in org.gbif.api.vocabulary
Enumeration for all of GBIF's participation statuses.
pendingEndorsements(Pageable) - Method in interface org.gbif.api.service.registry.NodeService
Provides access to the organizations that are awaiting an endorsement approval.
pendingEndorsements(UUID, Pageable) - Method in interface org.gbif.api.service.registry.NodeService
Provides access to the organizations that are awaiting an endorsement approval for the given node.
PLAZI_ORG_KEY - Static variable in class org.gbif.api.model.Constants
The publisher/organisation key for Plazi.
Point - Class in org.gbif.api.model.registry.eml.geospatial
 
Point() - Constructor for class org.gbif.api.model.registry.eml.geospatial.Point
 
Polygon - Class in org.gbif.api.model.registry.eml.geospatial
A simple polygon made out of a list of points to be joined.
Polygon() - Constructor for class org.gbif.api.model.registry.eml.geospatial.Polygon
 
PostPersist - Interface in org.gbif.api.model.registry
A marker intended for validation annotations indicating that the rule should be applied for entites before they have been persisted.
Predicate - Interface in org.gbif.api.model.occurrence.predicate
 
PREFIX - Static variable in enum org.gbif.dwc.terms.AcTerm
 
PREFIX - Static variable in enum org.gbif.dwc.terms.DcElement
 
PREFIX - Static variable in enum org.gbif.dwc.terms.DcTerm
 
PREFIX - Static variable in enum org.gbif.dwc.terms.DwcTerm
 
PREFIX - Static variable in enum org.gbif.dwc.terms.EolReferenceTerm
 
PREFIX - Static variable in enum org.gbif.dwc.terms.GbifInternalTerm
 
PREFIX - Static variable in enum org.gbif.dwc.terms.GbifTerm
 
PREFIX - Static variable in enum org.gbif.dwc.terms.IucnTerm
 
PREFIX - Static variable in enum org.gbif.dwc.terms.XmpRightsTerm
 
PREFIX - Static variable in enum org.gbif.dwc.terms.XmpTerm
 
PrePersist - Interface in org.gbif.api.model.registry
A marker intended for validation annotations indicating that the rule should be applied for entites before they have been persisted.
PreservationMethodType - Enum in org.gbif.api.vocabulary
The definition of the available preservation method types (the method used to preserve specimens).
ProcessingErrorType - Enum in org.gbif.api.vocabulary
Deprecated.
ProcessState - Enum in org.gbif.api.model.crawler
This enum lists the state of an occurrence or checklist crawl.
processStateChecklist(ProcessState) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
processStateOccurrence(ProcessState) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
processStateSample(ProcessState) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
Project - Class in org.gbif.api.model.registry.eml
A dataset can be part of a project.
Project() - Constructor for class org.gbif.api.model.registry.eml.Project
 
Project(String, String, List<Contact>, String, String, String) - Constructor for class org.gbif.api.model.registry.eml.Project
 
PropertiesUtil - Class in org.gbif.utils.file.properties
Utility class for handling properties files.
propertyAsBool(Properties, String, boolean) - Static method in class org.gbif.utils.file.properties.PropertiesUtil
Reads and casts the named property as a boolean.
propertyAsDouble(Properties, String, boolean, Double) - Static method in class org.gbif.utils.file.properties.PropertiesUtil
Reads and casts the named property as an Double.
propertyAsFloat(Properties, String, boolean, Float) - Static method in class org.gbif.utils.file.properties.PropertiesUtil
Reads and casts the named property as an Float.
propertyAsInt(Properties, String, boolean, Integer) - Static method in class org.gbif.utils.file.properties.PropertiesUtil
Reads and casts the named property as an Integer.
propertyAsUTF8Bytes(Properties, String, boolean, byte[]) - Static method in class org.gbif.utils.file.properties.PropertiesUtil
Reads and converts the named property as UTF8 bytes.
PROTOCOL - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
 
publishedDatasets(UUID, Pageable) - Method in interface org.gbif.api.service.registry.OrganizationService
Provides paging service to list datasets published by a specific organization.
publishedDatasets(UUID, DatasetType, OrganizationService) - Static method in class org.gbif.api.util.iterables.Iterables
 
PUBLISHING_COUNTRY - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
 
publishingCountriesForCountry(Country) - Method in interface org.gbif.api.service.occurrence.OccurrenceCountryIndexService
Lists all publishing countries of occurrences falling within a given country.

Q

qualifiedName() - Method in enum org.gbif.dwc.terms.AcTerm
 
qualifiedName() - Method in enum org.gbif.dwc.terms.DcElement
 
qualifiedName() - Method in enum org.gbif.dwc.terms.DcTerm
 
qualifiedName() - Method in enum org.gbif.dwc.terms.DwcTerm
The full qualified term uri including the namespace.
qualifiedName() - Method in enum org.gbif.dwc.terms.EolReferenceTerm
 
qualifiedName() - Method in enum org.gbif.dwc.terms.GbifInternalTerm
 
qualifiedName() - Method in enum org.gbif.dwc.terms.GbifTerm
The full qualified term uri including the namespace.
qualifiedName() - Method in enum org.gbif.dwc.terms.IucnTerm
 
qualifiedName() - Method in interface org.gbif.dwc.terms.Term
The full qualified term uri including the namespace.
qualifiedName() - Method in class org.gbif.dwc.terms.UnknownTerm
 
qualifiedName() - Method in enum org.gbif.dwc.terms.XmpRightsTerm
 
qualifiedName() - Method in enum org.gbif.dwc.terms.XmpTerm
 
QUERY_PARAM - Static variable in class org.gbif.api.model.common.search.SearchConstants
The http parameter name for the search query.
QUERY_WILDCARD - Static variable in class org.gbif.api.model.common.search.SearchConstants
Wildcard character to be used in 'search all' operations and range queries; e.g.: [* TO 100].
quoteChar - Variable in class org.gbif.utils.file.csv.CSVReader
 

R

randomAuthor() - Static method in class org.gbif.utils.text.StringUtils
 
randomEpithet() - Static method in class org.gbif.utils.text.StringUtils
 
randomFamily() - Static method in class org.gbif.utils.text.StringUtils
 
randomGenus() - Static method in class org.gbif.utils.text.StringUtils
 
randomSpecies() - Static method in class org.gbif.utils.text.StringUtils
Creates a random species binomial with no meaning at all, but highly randomized.
randomSpeciesYear() - Static method in class org.gbif.utils.text.StringUtils
 
randomString(int) - Static method in class org.gbif.utils.text.StringUtils
Creates a random string in upper case of given length with purely latin characters only.
Rank - Enum in org.gbif.api.vocabulary
An ordered taxonomic rank enumeration with the most frequently used values.
RankJsonDeserializer() - Constructor for class org.gbif.api.jackson.RankSerde.RankJsonDeserializer
 
RankJsonSerializer() - Constructor for class org.gbif.api.jackson.RankSerde.RankJsonSerializer
 
RankSerde - Class in org.gbif.api.jackson
Jackson JsonSerializer and Jackson JsonDeserializer classes for Rank that uses the common rank markers instead of enum names.
RankSerde() - Constructor for class org.gbif.api.jackson.RankSerde
 
RankSerde.RankJsonDeserializer - Class in org.gbif.api.jackson
Jackson JsonDeserializer for Rank.
RankSerde.RankJsonSerializer - Class in org.gbif.api.jackson
Jackson JsonSerializer for Rank.
rawOccurrencesPersistedError(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
rawOccurrencesPersistedNew(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
rawOccurrencesPersistedUnchanged(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
rawOccurrencesPersistedUpdated(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus.Builder
 
read() - Method in class org.gbif.utils.file.BomSafeInputStreamWrapper
Deprecated.
 
read() - Method in interface org.gbif.utils.file.tabular.TabularDataFileReader
Read a non-empty line of the tabular data file.
READ_AHEAD_BYTES - Static variable in class org.gbif.utils.file.FileSplitter
 
ReadBuilder - Class in org.gbif.api.model.metrics.cube
Provides building of addresses for reading the cube.
ReadBuilder() - Constructor for class org.gbif.api.model.metrics.cube.ReadBuilder
 
readByteBuffer(File) - Static method in class org.gbif.utils.file.FileUtils
Reads a complete file into a byte buffer.
readByteBuffer(File, int) - Static method in class org.gbif.utils.file.FileUtils
Reads the first bytes of a file into a byte buffer.
readEntireStream(InputStream) - Method in class org.gbif.utils.file.InputStreamUtils
Converts an entire InputStream to a single String with UTF8 as the character encoding.
readEntireStream(InputStream, String) - Method in class org.gbif.utils.file.InputStreamUtils
Converts an entire InputStream to a single String with explicitly provided character encoding.
readFromFile(String) - Static method in class org.gbif.utils.file.properties.PropertiesUtil
Reads a property file from an absolute filepath.
RecordError - Class in org.gbif.api.model.metrics
Deprecated.
RecordError() - Constructor for class org.gbif.api.model.metrics.RecordError
Deprecated.
 
RecordError(RecordError.Builder) - Constructor for class org.gbif.api.model.metrics.RecordError
Deprecated.
 
RecordError.Builder - Class in org.gbif.api.model.metrics
Deprecated.
 
recordId(long) - Method in class org.gbif.api.model.metrics.RecordError.Builder
Deprecated.
 
Reference - Class in org.gbif.api.model.checklistbank
Reference Model Object represents a literature reference stating a bibliography for a taxon.
Reference() - Constructor for class org.gbif.api.model.checklistbank.Reference
 
ReferenceService - Interface in org.gbif.api.service.checklistbank
Service interface for Reference Interface methods.
RelationType - Enum in org.gbif.api.vocabulary
 
remove(Object) - Method in class org.gbif.utils.collection.CompactHashSet
Removes the specified element from the set.
remove() - Method in class org.gbif.utils.file.csv.CSVReader
 
removeConstituent(UUID, UUID) - Method in interface org.gbif.api.service.registry.NetworkService
Removes an existing constituent dataset from a network.
removeProperties(Properties, String) - Static method in class org.gbif.utils.file.properties.PropertiesUtil
Remove properties from the original object and return the removed element(s) as new Properties object.
Request<T> - Class in org.gbif.api.model.common.messaging
Class that represents a generic invocation of operation.
Request() - Constructor for class org.gbif.api.model.common.messaging.Request
 
Request.Builder<T> - Class in org.gbif.api.model.common.messaging
Builder class for Request instances.
Request.OperationType - Enum in org.gbif.api.model.common.messaging
CRUD operation types.
ResourcesUtil - Class in org.gbif.utils.file
Utils class dealing with classpath resources in addition to guavas Resources.
Response<T> - Class in org.gbif.api.model.common.messaging
 
Response() - Constructor for class org.gbif.api.model.common.messaging.Response
 
Response(Response<T>) - Constructor for class org.gbif.api.model.common.messaging.Response
 
Response(Response.Status) - Constructor for class org.gbif.api.model.common.messaging.Response
Constructor using status only.
Response(Response.Status, String) - Constructor for class org.gbif.api.model.common.messaging.Response
 
Response(Response.Status, T, String) - Constructor for class org.gbif.api.model.common.messaging.Response
 
Response.Builder<T> - Class in org.gbif.api.model.common.messaging
Builder for Response objects.
Response.Status - Enum in org.gbif.api.model.common.messaging
 
Response.StatusCode - Enum in org.gbif.api.model.common.messaging
 
ResponseChain<T,R> - Class in org.gbif.api.model.common.messaging
Response that can contain a list of related responses.
ResponseChain() - Constructor for class org.gbif.api.model.common.messaging.ResponseChain
 
ResponseChain(Response.Status) - Constructor for class org.gbif.api.model.common.messaging.ResponseChain
 
ResponseChain(Response.Status, String) - Constructor for class org.gbif.api.model.common.messaging.ResponseChain
 
ResponseChain(Response.Status, T, String) - Constructor for class org.gbif.api.model.common.messaging.ResponseChain
 
Rollup - Class in org.gbif.api.model.metrics.cube
A rollup defines an addressable count that is maintained for a set of dimensions.
Rollup() - Constructor for class org.gbif.api.model.metrics.cube.Rollup
Prefer use of the constructor taking the parameters over this method.
Rollup(Dimension<?>...) - Constructor for class org.gbif.api.model.metrics.cube.Rollup
 
Rollup(Set<Dimension<?>>) - Constructor for class org.gbif.api.model.metrics.cube.Rollup
 
ROLLUPS - Static variable in class org.gbif.api.model.metrics.cube.OccurrenceCube
 
rootException(Throwable) - Method in class org.gbif.api.model.common.messaging.Response.Builder
 
RsGbifOrg - Class in org.gbif.utils.rs
Utility class knowing the url layout of rs.gbif.org to access authority and dictionary files.
RsGbifOrg() - Constructor for class org.gbif.utils.rs.RsGbifOrg
 

S

SamplingDescription - Class in org.gbif.api.model.registry.eml
 
SamplingDescription() - Constructor for class org.gbif.api.model.registry.eml.SamplingDescription
 
SamplingDescription(String, String, String, List<String>) - Constructor for class org.gbif.api.model.registry.eml.SamplingDescription
 
sanitize(T, PolicyFactory, Set<String>) - Static method in class org.gbif.utils.html.BeanHtmlSanitizer
Apply the PolicyFactory to all String properties of the provided bean.
sanitize(T, PolicyFactory) - Static method in class org.gbif.utils.html.BeanHtmlSanitizer
Apply the PolicyFactory to all String properties of the provided bean.
scanToChunk(File, long) - Static method in class org.gbif.utils.file.FileSplitter
 
scientificName() - Method in enum org.gbif.api.vocabulary.Kingdom
 
search(R) - Method in interface org.gbif.api.service.common.SearchService
Issues a SearchRequest and retrieves a response resulting of the search operation.
search(String, Pageable) - Method in interface org.gbif.api.service.registry.NetworkEntityService
A simple search that supports paging.
SearchConstants - Class in org.gbif.api.model.common.search
Contains common search constants.
SearchParameter - Interface in org.gbif.api.model.common.search
Interface to be implemented by all search parameter enumerations.
SearchRequest<P extends SearchParameter> - Class in org.gbif.api.model.common.search
Generic request class for search operations.
SearchRequest() - Constructor for class org.gbif.api.model.common.search.SearchRequest
Constructor with default paging offset & limit.
SearchRequest(String) - Constructor for class org.gbif.api.model.common.search.SearchRequest
Simple query constructor with default paging offset & limit.
SearchRequest(Pageable) - Constructor for class org.gbif.api.model.common.search.SearchRequest
Minimal paging constructor.
SearchRequest(long, int) - Constructor for class org.gbif.api.model.common.search.SearchRequest
Minimal paging constructor.
SearchResponse<T,P extends SearchParameter> - Class in org.gbif.api.model.common.search
Generic response of a search operation.
SearchResponse() - Constructor for class org.gbif.api.model.common.search.SearchResponse
Default constructor.
SearchResponse(Pageable) - Constructor for class org.gbif.api.model.common.search.SearchResponse
Minimal paging constructor.
SearchResponse(PagingResponse<T>) - Constructor for class org.gbif.api.model.common.search.SearchResponse
Minimal paging constructor.
SearchResponse(long, int) - Constructor for class org.gbif.api.model.common.search.SearchResponse
Minimal paging constructor.
SearchResponse(long, int, Long, List<T>, List<Facet<P>>) - Constructor for class org.gbif.api.model.common.search.SearchResponse
Full constructor.
SearchService<T,P extends Enum<?> & SearchParameter,R extends SearchRequest<P>> - Interface in org.gbif.api.service.common
Parameterized generic search interface that supports pagination.
SearchTypeValidator - Class in org.gbif.api.util
Utility class to do basic validation of all search enum based values.
SEPARATOR - Static variable in class org.gbif.utils.file.FileSplitter
 
serialize(Extension, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.ExtensionSerializer
 
serialize(License, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.LicenseSerde.LicenseJsonSerializer
 
serialize(Map.Entry<Object, Object>, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.MapEntrySerde.MapEntryJsonSerializer
 
serialize(Rank, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.RankSerde.RankJsonSerializer
 
serialize(List<Map<Term, String>>, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.jackson.TermMapListSerializer
 
serialize(DOI, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.model.common.DOI.Serializer
 
serialize(Country, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.vocabulary.Country.IsoSerializer
 
serialize(Country, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.vocabulary.Country.TitleSerializer
 
serialize(Language, JsonGenerator, SerializerProvider) - Method in class org.gbif.api.vocabulary.Language.IsoSerializer
 
serialize(Term, JsonGenerator, SerializerProvider) - Method in class org.gbif.dwc.terms.jackson.TermKeySerializer
 
serialize(Term, JsonGenerator, SerializerProvider) - Method in class org.gbif.dwc.terms.jackson.TermSerializer
 
Serializer() - Constructor for class org.gbif.api.model.common.DOI.Serializer
 
ServiceUnavailableException - Exception in org.gbif.api.exception
An unchecked exception that indicates that the service is not available.
ServiceUnavailableException(String, Throwable) - Constructor for exception org.gbif.api.exception.ServiceUnavailableException
Constructor for ServiceUnavailableException.
ServiceUnavailableException(String) - Constructor for exception org.gbif.api.exception.ServiceUnavailableException
 
setAbbreviation(String) - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
setAbbreviation(String) - Method in class org.gbif.api.model.registry.Node
 
setAbbreviation(String) - Method in class org.gbif.api.model.registry.Organization
 
setAccepted(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
Sets the scientific name of the basionym, i.e.
setAccepted(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setAcceptedKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
Sets the usage key for the accepted name.
setAcceptedKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setAccordingTo(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setAccordingTo(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setAccordingTo(String) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
setAccuracy(String) - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
setAdditionalInfo(String) - Method in class org.gbif.api.model.registry.Dataset
 
setAddress(List<String>) - Method in interface org.gbif.api.model.registry.Address
 
setAddress(List<String>) - Method in class org.gbif.api.model.registry.Contact
 
setAddress(List<String>) - Method in class org.gbif.api.model.registry.Network
 
setAddress(List<String>) - Method in class org.gbif.api.model.registry.Node
 
setAddress(List<String>) - Method in class org.gbif.api.model.registry.Organization
 
setAgeInDays(Integer) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
 
setAlias(String) - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
setAlternatives(List<NameUsageMatch>) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
setAlternatives(List<String>) - Method in class org.gbif.api.model.common.search.SpellCheckResponse.Suggestion
Sets the alternatives for a token.
setAppendixCites(CitesAppendix) - Method in class org.gbif.api.model.checklistbank.Distribution
 
setArea(String) - Method in class org.gbif.api.model.checklistbank.VernacularName
 
setAudience(String) - Method in class org.gbif.api.model.common.MediaObject
 
setAuthor(String) - Method in class org.gbif.api.model.checklistbank.Reference
Deprecated.
setAuthorship(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setAuthorship(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
 
setAuthorship(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setAuthorsParsed(boolean) - Method in class org.gbif.api.model.checklistbank.ParsedName
 
setBasionym(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
sets the basionym name.
setBasionym(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setBasionymKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setBasionymKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setBasisOfRecord(BasisOfRecord) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setBibliographicCitations(List<Citation>) - Method in class org.gbif.api.model.registry.Dataset
 
setBoundingBox(BoundingBox) - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
 
setBracketAuthorship(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
 
setBracketYear(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
 
setCanonicalName(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setCanonicalName(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
setCanonicalName(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setCanonicalName(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
setCatalogNumber(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
setCatalogNumber(String) - Method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
setCharset(String) - Method in class org.gbif.api.model.registry.eml.DataDescription
 
setCitation(String) - Method in class org.gbif.api.model.checklistbank.Reference
 
setCitation(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
setCitation(Citation) - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
setCity(String) - Method in interface org.gbif.api.model.registry.Address
 
setCity(String) - Method in class org.gbif.api.model.registry.Contact
 
setCity(String) - Method in class org.gbif.api.model.registry.Network
 
setCity(String) - Method in class org.gbif.api.model.registry.Node
 
setCity(String) - Method in class org.gbif.api.model.registry.Organization
 
setClassKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setClassKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
setClassKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setClassKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
setClassKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
 
setClassKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setClazz(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setClazz(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
setClazz(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setClazz(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
setClazz(String) - Method in interface org.gbif.api.model.common.LinneanClassification
 
setClazz(String) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setCode(Integer) - Method in enum org.gbif.api.model.common.messaging.Response.StatusCode
 
setColCoveragePct(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCollectionCode(String) - Method in class org.gbif.api.model.checklistbank.TypeSpecimen
Deprecated.
setCollectionCode(String) - Method in class org.gbif.api.model.metrics.RecordError
Deprecated.
 
setCollections(List<Collection>) - Method in class org.gbif.api.model.registry.Dataset
 
setColMatchingCount(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCombinations(List<NameUsage>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
setComments(List<Comment>) - Method in interface org.gbif.api.model.registry.Commentable
 
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Dataset
 
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Installation
 
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Network
 
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Node
 
setComments(List<Comment>) - Method in class org.gbif.api.model.registry.Organization
 
setCommonName(String) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverage
 
setConfidence(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
setConfirmationKey(UUID) - Method in class org.gbif.api.model.registry.ConfirmationKeyParameter
 
setConstituentKey(UUID) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setConstituentKey(UUID) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setContacts(List<Contact>) - Method in interface org.gbif.api.model.registry.Contactable
 
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Dataset
 
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.eml.Project
 
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Installation
 
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Network
 
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Node
 
setContacts(List<Contact>) - Method in class org.gbif.api.model.registry.Organization
 
setContent(T) - Method in class org.gbif.api.model.common.messaging.Response
 
setContent(String) - Method in class org.gbif.api.model.registry.Comment
 
setContent(String) - Method in class org.gbif.api.model.registry.Metadata
 
setContext(Map<String, String>) - Method in class org.gbif.api.model.common.messaging.Request
 
setContinent(Continent) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setContinent(Continent) - Method in class org.gbif.api.model.registry.Node
 
setContinent(Set<Continent>) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
setContributor(String) - Method in class org.gbif.api.model.checklistbank.Description
 
setContributor(String) - Method in class org.gbif.api.model.common.MediaObject
 
setCoordinateAccuracy(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setCoordinatePrecision(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setCoordinateUncertaintyInMeters(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setCoreField(Term, String) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
For setting a specific field without having to replace the entire fields Map.
setCorrectlySpelled(boolean) - Method in class org.gbif.api.model.common.search.SpellCheckResponse
Sets the misspelling flag.
setCount(Long) - Method in class org.gbif.api.model.common.paging.PagingResponse
Sets the total count for all results, not only the ones in this response page.
setCount(Long) - Method in class org.gbif.api.model.common.search.Facet.Count
Sets the count of occurrences for this category.
setCount(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
setCount(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
 
setCountByConstituent(Map<UUID, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCountByIssue(Map<NameUsageIssue, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCountByKingdom(Map<Kingdom, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCountByOrigin(Map<Origin, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCountByRank(Map<Rank, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCountExtRecordsByExtension(Map<Extension, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCountNamesByLanguage(Map<Language, Integer>) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCountry(Country) - Method in class org.gbif.api.model.checklistbank.Distribution
 
setCountry(Country) - Method in class org.gbif.api.model.checklistbank.VernacularName
 
setCountry(Country) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setCountry(Country) - Method in interface org.gbif.api.model.registry.Address
 
setCountry(Country) - Method in class org.gbif.api.model.registry.Contact
 
setCountry(Country) - Method in class org.gbif.api.model.registry.Network
 
setCountry(Country) - Method in class org.gbif.api.model.registry.Node
 
setCountry(Country) - Method in class org.gbif.api.model.registry.Organization
 
setCountryCoverage(Set<Country>) - Method in class org.gbif.api.model.registry.Dataset
 
setCountryCoverage(Set<Country>) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
setCounts(List<Facet.Count>) - Method in class org.gbif.api.model.common.search.Facet
Sets the list of counts/categories for this faceted field.
setCoverages(List<TaxonomicCoverage>) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
 
setCrawlContext(String) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
setCrawlId(Integer) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
setCrawlJob(CrawlJob) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
setCreated(Date) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setCreated(Date) - Method in class org.gbif.api.model.common.MediaObject
 
setCreated(Date) - Method in class org.gbif.api.model.occurrence.Download
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Comment
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Contact
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Dataset
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Endpoint
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Identifier
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Installation
 
setCreated(Date) - Method in class org.gbif.api.model.registry.MachineTag
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Metadata
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Network
 
setCreated(Date) - Method in interface org.gbif.api.model.registry.NetworkEntity
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Node
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Organization
 
setCreated(Date) - Method in class org.gbif.api.model.registry.Tag
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Comment
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Contact
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Endpoint
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Identifier
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Installation
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.MachineTag
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Metadata
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Network
 
setCreatedBy(String) - Method in interface org.gbif.api.model.registry.NetworkEntity
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Node
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Organization
 
setCreatedBy(String) - Method in class org.gbif.api.model.registry.Tag
 
setCreator(String) - Method in class org.gbif.api.model.checklistbank.Description
 
setCreator(String) - Method in class org.gbif.api.model.common.MediaObject
 
setCreator(String) - Method in class org.gbif.api.model.occurrence.DownloadRequest
 
setCultivarEpithet(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
 
setCuratorialUnits(List<CuratorialUnitComposite>) - Method in class org.gbif.api.model.registry.Dataset
 
setCuratorialUnits(List<CuratorialUnitComposite>) - Method in class org.gbif.api.model.registry.eml.Collection
 
setDataDescriptions(List<DataDescription>) - Method in class org.gbif.api.model.registry.Dataset
 
setDataLanguage(Language) - Method in class org.gbif.api.model.registry.Dataset
 
setDatasetCitation(String) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
setDatasetDOI(DOI) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
setDatasetKey(UUID) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setDatasetKey(UUID) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setDatasetKey(UUID) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setDatasetKey(UUID) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
setDatasetKey(UUID) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
setDatasetKey(UUID) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
setDatasetKey(UUID) - Method in class org.gbif.api.model.registry.Metadata
 
setDatasetTitle(String) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
setDate(String) - Method in class org.gbif.api.model.checklistbank.Reference
Deprecated.
setDate(Date) - Method in class org.gbif.api.model.registry.eml.temporal.SingleDate
 
setDateIdentified(Date) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setDateSignedMOU(Date) - Method in class org.gbif.api.model.registry.Node
 
setDay(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setDecades(List<Integer>) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
setDecimalLatitude(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setDecimalLongitude(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setDeclaredCount(Long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
setDeleted(Date) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setDeleted(Date) - Method in class org.gbif.api.model.common.AbstractGbifUser
 
setDeleted(Date) - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
setDeleted(Date) - Method in class org.gbif.api.model.registry.Installation
 
setDeleted(Date) - Method in class org.gbif.api.model.registry.Network
 
setDeleted(Date) - Method in interface org.gbif.api.model.registry.NetworkEntity
 
setDeleted(Date) - Method in class org.gbif.api.model.registry.Node
 
setDeleted(Date) - Method in class org.gbif.api.model.registry.Organization
 
setDelimiter(String) - Method in class org.gbif.utils.file.csv.CSVReaderFactory.CSVMetadata
 
setDelimiter(Character) - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
 
setDepth(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setDepthAccuracy(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setDescription(String) - Method in class org.gbif.api.model.checklistbank.Description
 
setDescription(String) - Method in class org.gbif.api.model.common.MediaObject
 
setDescription(String) - Method in class org.gbif.api.model.registry.Contact
 
setDescription(String) - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
setDescription(String) - Method in class org.gbif.api.model.registry.eml.geospatial.GeospatialCoverage
 
setDescription(String) - Method in class org.gbif.api.model.registry.eml.Project
 
setDescription(String) - Method in class org.gbif.api.model.registry.eml.TaxonomicCoverages
 
setDescription(String) - Method in class org.gbif.api.model.registry.Endpoint
 
setDescription(String) - Method in class org.gbif.api.model.registry.Installation
 
setDescription(String) - Method in class org.gbif.api.model.registry.Network
 
setDescription(String) - Method in interface org.gbif.api.model.registry.NetworkEntity
 
setDescription(String) - Method in class org.gbif.api.model.registry.Node
 
setDescription(String) - Method in class org.gbif.api.model.registry.Organization
 
setDescription(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
setDescription(String) - Method in class org.gbif.api.model.registry.search.DatasetSuggestResult
 
setDescriptions(List<Description>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
setDescriptions(List<Description>) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setDesignDescription(String) - Method in class org.gbif.api.model.registry.eml.Project
 
setDetails(String) - Method in class org.gbif.api.model.registry.metasync.MetasyncHistory
 
setDeterminedBy(String) - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
setDeterminedDate(String) - Method in class org.gbif.api.model.occurrence.FactOrMeasurment
 
setDeviation(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitComposite
 
setDeviation(int) - Method in class org.gbif.api.model.registry.eml.curatorial.CuratorialUnitCount
 
setDimensions(Set<Dimension<?>>) - Method in class org.gbif.api.model.metrics.cube.Rollup
Where possible use the constructor and not this version
setDisabled(boolean) - Method in class org.gbif.api.model.registry.Installation
 
setDistinctNamesCount(int) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setDistributions(List<Distribution>) - Method in class org.gbif.api.model.checklistbank.NameUsageContainer
 
setDoi(String) - Method in class org.gbif.api.model.checklistbank.Reference
 
setDoi(DOI) - Method in class org.gbif.api.model.occurrence.Download
 
setDoi(DOI) - Method in class org.gbif.api.model.registry.Dataset
 
setDownload(Download) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
setDownloaded(Date) - Method in class org.gbif.api.model.checklistbank.DatasetMetrics
 
setDownloadKey(String) - Method in class org.gbif.api.model.registry.DatasetOccurrenceDownloadUsage
 
setDownloadLink(String) - Method in class org.gbif.api.model.occurrence.Download
 
setDuplicateOfDatasetKey(UUID) - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
setElevation(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setElevationAccuracy(Double) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setEmail(String) - Method in class org.gbif.api.model.common.AbstractGbifUser
 
setEmail(String) - Method in class org.gbif.api.model.common.User
Deprecated.
 
setEmail(List<String>) - Method in interface org.gbif.api.model.registry.Address
 
setEmail(List<String>) - Method in class org.gbif.api.model.registry.Contact
 
setEmail(List<String>) - Method in class org.gbif.api.model.registry.Network
 
setEmail(List<String>) - Method in class org.gbif.api.model.registry.Node
 
setEmail(List<String>) - Method in class org.gbif.api.model.registry.Organization
 
setEncoding(Charset) - Method in class org.gbif.utils.file.tabular.TabularFileMetadata
 
setEnd(Date) - Method in class org.gbif.api.model.registry.eml.temporal.DateRange
 
setEndDayOfYear(Integer) - Method in class org.gbif.api.model.checklistbank.Distribution
 
setEndOfRecords(boolean) - Method in class org.gbif.api.model.common.paging.PagingResponse
Manually sets the end of records flag.
setEndorsementApproved(boolean) - Method in class org.gbif.api.model.registry.Organization
 
setEndorsingNodeKey(UUID) - Method in class org.gbif.api.model.registry.Organization
 
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Dataset
 
setEndpoints(List<Endpoint>) - Method in interface org.gbif.api.model.registry.Endpointable
 
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Installation
 
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Network
 
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Node
 
setEndpoints(List<Endpoint>) - Method in class org.gbif.api.model.registry.Organization
 
setEstablishedDate(String) - Method in class org.gbif.api.model.occurrence.OccurrenceRelation
 
setEstablishmentMeans(EstablishmentMeans) - Method in class org.gbif.api.model.checklistbank.Distribution
 
setEstablishmentMeans(EstablishmentMeans) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setEventDate(Date) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setExtended(boolean) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
setExtensions(Map<Extension, List<Map<Term, String>>>) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
 
setExtensions(Map<Extension, List<Map<Term, String>>>) - Method in class org.gbif.api.model.occurrence.VerbatimOccurrence
 
setExternal(boolean) - Method in class org.gbif.api.model.registry.Dataset
Persisted in the database table.
setExtinct(Boolean) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setExtinct(Boolean) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
 
setFacetLimit(Integer) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
 
setFacetMinCount(Integer) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
 
setFacetOffset(Integer) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
 
setFacetPages(Map<P, Pageable>) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
 
setFacets(Set<P>) - Method in class org.gbif.api.model.common.search.FacetedSearchRequest
Sets the list of facets.
setFacets(List<Facet<P>>) - Method in class org.gbif.api.model.common.search.SearchResponse
Sets the list of facets.
setFacts(List<FactOrMeasurment>) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setFamily(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setFamily(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
setFamily(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setFamily(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
setFamily(String) - Method in interface org.gbif.api.model.common.LinneanClassification
 
setFamily(String) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setFamilyKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setFamilyKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
setFamilyKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setFamilyKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
setFamilyKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
 
setFamilyKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setField(T) - Method in class org.gbif.api.model.common.search.Facet
Sets the field of the facet.
setFields(Map<Term, String>) - Method in class org.gbif.api.model.checklistbank.VerbatimNameUsage
 
setFinishedCrawling(Date) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
setFinishReason(FinishReason) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
setFirstName(String) - Method in class org.gbif.api.model.common.AbstractGbifUser
 
setFirstName(String) - Method in class org.gbif.api.model.common.User
Deprecated.
 
setFirstName(String) - Method in class org.gbif.api.model.registry.Contact
 
setFormat(String) - Method in class org.gbif.api.model.common.MediaObject
 
setFormat(DownloadFormat) - Method in class org.gbif.api.model.occurrence.DownloadRequest
This parameter determines the output format of the requested download.
setFormat(String) - Method in class org.gbif.api.model.registry.eml.DataDescription
 
setFormatVersion(String) - Method in class org.gbif.api.model.registry.eml.DataDescription
 
setFragmentsEmitted(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
setFragmentsProcessed(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
setFragmentsReceived(long) - Method in class org.gbif.api.model.crawler.DatasetProcessStatus
 
setFreshwater(Boolean) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
 
setFullText(String) - Method in class org.gbif.api.model.registry.search.DatasetSearchResult
 
setFunding(String) - Method in class org.gbif.api.model.registry.eml.Project
 
setGbifRegion(GbifRegion) - Method in class org.gbif.api.model.registry.Node
 
setGenericName(String) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setGenus(String) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setGenus(String) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
setGenus(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setGenus(String) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
setGenus(String) - Method in interface org.gbif.api.model.common.LinneanClassification
 
setGenus(String) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setGenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsage
 
setGenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.NameUsageMatch
 
setGenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setGenusKey(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSuggestResult
 
setGenusKey(Integer) - Method in interface org.gbif.api.model.common.LinneanClassificationKeys
 
setGenusKey(Integer) - Method in class org.gbif.api.model.occurrence.Occurrence
 
setGenusOrAbove(String) - Method in class org.gbif.api.model.checklistbank.ParsedName
 
setGeographicCoverageDescription(String) - Method in class org.gbif.api.model.registry.Dataset
 
setGeographicCoverages(List<GeospatialCoverage>) - Method in class org.gbif.api.model.registry.Dataset
 
setGlobalCoverage(double, double, double, double) - Method in class org.gbif.api.model.registry.eml.geospatial.BoundingBox
Set whether this binding box represents global coverage or not.
setHabitat(String) - Method in class org.gbif.api.model.checklistbank.SpeciesProfile
 
setHabitats(List<Habitat>) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchResult
 
setHigherRank(LinneanClassification, Rank, String) - Static method in class org.gbif.api.util.ClassificationUtils
Sets a higher taxon property by passing the rank of it.
setHigherRank(T, Rank, String, Integer) - Static method in class org.gbif.api.util.ClassificationUtils
Sets a higher taxon property by passing the rank of it.
setHigherRankKey(LinneanClassificationKeys, Rank, Integer) - Static method in class org.gbif.api.util.ClassificationUtils
Sets a higher taxon property by passing the rank of it.
setHighlight(boolean) - Method in class org.gbif.api.model.common.search.SearchRequest
 
setHighlightContext(Integer) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
setHighlightContext(Integer) - Method in class org.gbif.api.model.registry.search.DatasetSearchRequest
 
setHighlightFields(Set<NameUsageSearchRequest.QueryField>) - Method in class org.gbif.api.model.checklistbank.search.NameUsageSearchRequest
 
setHomepage(List<URI>) - Method in interface org.gbif.api.model.registry.Address
 
setHomepage(List<URI>) - Method in class org.gbif.api.model.registry.Contact
 
setHomepage(URI) - Method in class org.gbif.api.model.registry.Dataset