Package org.gbif.dwca.io

Class ArchiveFactoryTest

java.lang.Object

org.gbif.dwca.io.ArchiveFactoryTest

public class ArchiveFactoryTest
extends Object

Constructor Summary

Constructors

Constructor	Description
ArchiveFactoryTest()

Method Summary

Modifier and Type	Method	Description
void	testCoreRecords()
void	testCsv()	Test dwca-reader bug 83
void	testCsvJsonEscapedQuotes()	Test extracting a CSV file containing embedded JSON, which itself contains escaped quotes.
void	testCsvOptionalQuotes()	Testing CSV with optional quotes
void	testExtensionNPE()	The pensoft archive http://pensoft.net/dwc/bdj/checklist_980.zip contains empty extension files which caused NPE in the dwca reader.
void	testFallbackToDefaultsArchives()	Basic validation of archives, where we rely on falling back to defaults from the DWC-A metadata schema.
void	testGnubTab()	Test GNUB style dwca with a single tab delimited file that has a .tab suffix.
void	testGnubTabZip()	Test GNUB style dwca with a single tab delimited file that has a .tab suffix.
void	testInvalidArchives()	Basic validation of archives, that the declared files exist and have basic, valid structure.
void	testIssue2158()	Test IPT bug 2158
void	testIssue78()	Identifier not set properly when reading single csv file the csv file attached is a utf16 little endian encoded file.
void	testMetaHandlerUtf16le()
void	testNullCoreID()	Ensure that extensions are just skipped for archives that do not have the core id in the mapped extension.
void	testOpenArchive()
void	testOpenArchiveForEventCore()	Test opening a single data file with both eventID column, meaning it has dwc:Event rowType.
void	testOpenArchiveForGenericCore()	Test opening a single data file with a generic ID column and an eventID column meaning the Archive's ID-term gets set to (DwcTerm.eventID and its rowType gets set to DwcTerm.Event.
void	testOpenSmallArchiveWithEmptyLines()
void	testQuotedHeaders()	Test bug 77.
void	testSimpleDWCA()	Test reading a single-file Simple Darwin Core Archive.
void	testStarIteratorExtRecords()	Test extension sorting verifying that all core records do have the right number of extension records attached when using the star record iterator.
void	testTab()
void	testTabEol()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ArchiveFactoryTest

public ArchiveFactoryTest()

Method Details

testMetaHandlerUtf16le

@Test
public void testMetaHandlerUtf16le()
                            throws Exception

Throws:

Exception

testCoreRecords

@Test
public void testCoreRecords()
                     throws IOException

Throws:

IOException

testCsv

@Test
public void testCsv()
             throws org.gbif.dwc.UnsupportedArchiveException,
IOException

Test dwca-reader bug 83

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

See Also:

• Issue 83

testGnubTab

@Test
public void testGnubTab()
                 throws org.gbif.dwc.UnsupportedArchiveException,
IOException

Test GNUB style dwca with a single tab delimited file that has a .tab suffix.

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

testGnubTabZip

@Test
public void testGnubTabZip()
                    throws org.gbif.dwc.UnsupportedArchiveException,
IOException

Test GNUB style dwca with a single tab delimited file that has a .tab suffix.

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

testCsvOptionalQuotes

@Test
public void testCsvOptionalQuotes()
                           throws org.gbif.dwc.UnsupportedArchiveException,
IOException

Testing CSV with optional quotes

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

testIssue2158

@Test
public void testIssue2158()
                   throws org.gbif.dwc.UnsupportedArchiveException,
IOException

Test IPT bug 2158

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

See Also:

• IPT revision 2158

testExtensionNPE

@Test
public void testExtensionNPE()
                      throws org.gbif.dwc.UnsupportedArchiveException,
IOException

The pensoft archive http://pensoft.net/dwc/bdj/checklist_980.zip contains empty extension files which caused NPE in the dwca reader.

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

testStarIteratorExtRecords

@Test
public void testStarIteratorExtRecords()
                                throws Exception

Test extension sorting verifying that all core records do have the right number of extension records attached when using the star record iterator.

Throws:

Exception

testIssue78

@Test
public void testIssue78()
                 throws IOException,
org.gbif.dwc.UnsupportedArchiveException

Identifier not set properly when reading single csv file the csv file attached is a utf16 little endian encoded file. This encoding is known to cause problems and not supported. If you look at the detected concept terms you will find that there is NO concept at all detected because of the wrong character encoding used (the factory tries it with utf8).

Throws:

IOException

org.gbif.dwc.UnsupportedArchiveException

See Also:

• Issue 78

testOpenArchive

@Test
public void testOpenArchive()
                     throws IOException,
org.gbif.dwc.UnsupportedArchiveException

Throws:

IOException

org.gbif.dwc.UnsupportedArchiveException

testOpenSmallArchiveWithEmptyLines

@Test
public void testOpenSmallArchiveWithEmptyLines()
                                        throws IOException,
org.gbif.dwc.UnsupportedArchiveException

Throws:

IOException

org.gbif.dwc.UnsupportedArchiveException

testQuotedHeaders

@Test
public void testQuotedHeaders()
                       throws IOException,
org.gbif.dwc.UnsupportedArchiveException

Test bug 77.

Throws:

IOException

org.gbif.dwc.UnsupportedArchiveException

See Also:

• Issue 77

testTab

@Test
public void testTab()
             throws org.gbif.dwc.UnsupportedArchiveException,
IOException

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

testSimpleDWCA

@Test
public void testSimpleDWCA()
                    throws org.gbif.dwc.UnsupportedArchiveException,
IOException

Test reading a single-file Simple Darwin Core Archive.

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

testTabEol

@Test
public void testTabEol()
                throws org.gbif.dwc.UnsupportedArchiveException,
IOException

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

testCsvJsonEscapedQuotes

@Test
public void testCsvJsonEscapedQuotes()
                              throws org.gbif.dwc.UnsupportedArchiveException,
IOException

Test extracting a CSV file containing embedded JSON, which itself contains escaped quotes. JSON value: { "test": "value, \"like\" this" } As a column in CSV: "{ ""test"": ""value, \""like\"" this"" }"

Throws:

org.gbif.dwc.UnsupportedArchiveException

IOException

testNullCoreID

@Test
public void testNullCoreID()
                    throws IOException

Ensure that extensions are just skipped for archives that do not have the core id in the mapped extension. https://code.google.com/p/darwincore/issues/detail?id=232

Throws:

IOException

testOpenArchiveForEventCore

@Test
public void testOpenArchiveForEventCore()
                                 throws IOException,
org.gbif.dwc.UnsupportedArchiveException

Test opening a single data file with both eventID column, meaning it has dwc:Event rowType.

Throws:

IOException

org.gbif.dwc.UnsupportedArchiveException

testOpenArchiveForGenericCore

@Test
public void testOpenArchiveForGenericCore()
                                   throws IOException,
org.gbif.dwc.UnsupportedArchiveException

Test opening a single data file with a generic ID column and an eventID column meaning the Archive's ID-term gets set to (DwcTerm.eventID and its rowType gets set to DwcTerm.Event.

Throws:

IOException

org.gbif.dwc.UnsupportedArchiveException

testFallbackToDefaultsArchives

@Test
public void testFallbackToDefaultsArchives()
                                    throws IOException

Basic validation of archives, where we rely on falling back to defaults from the DWC-A metadata schema.

Throws:

IOException

testInvalidArchives

@Test
public void testInvalidArchives()

Basic validation of archives, that the declared files exist and have basic, valid structure.