MixsTerm (Darwin Core API 1.49-SNAPSHOT API)

java.lang.Object
- java.lang.Enum<MixsTerm>
- - org.gbif.dwc.terms.MixsTerm

All Implemented Interfaces:

Serializable, Comparable<MixsTerm>, AlternativeNames, Term
```
public enum MixsTerm
extends Enum<MixsTerm>
implements Term, AlternativeNames, Serializable
```
All GenSC (Genomics Standards Consortium) Minimum Information about any Sequence (MIxS) terms with namespace https://w3id.org/mixs/ or https://w3id.org/gensc/terms/MIXS:. Note URIs here must use the https://w3id.org/mixs/0000001 form, but we keep the simple name for casual use (the enum names, the simpleName for CSV headers etc). See https://genomicsstandardsconsortium.github.io/mixs/ See https://github.com/GenomicsStandardsConsortium/mixs/blob/main/src/mixs/schema/mixs.yaml

Enum Constant Summary

Enum Constants
Enum Constant and Description
`_16s_recover`
`_16s_recover_software`
`adapters`
`annot`
`assembly_name`
`assembly_qual`
`assembly_software`
`associated_resource`
`bin_param`
`bin_software`
`biotic_relationship`
`chimera_check`
`compl_appr`
`compl_score`
`compl_software`
`contam_score`
`contam_screen_input`
`contam_screen_param`
`decontam_software`
`detec_type`
`encoded_traits`
`env_broad_scale`
`env_local_scale`
`env_medium`
`estimated_size`
`experimental_factor`
`extrachrom_elements`
`feat_pred`
`host_disease_stat`
`host_pred_appr`
`host_pred_est_acc`
`host_spec_range`
`isol_growth_condt`
`lib_layout`
`lib_reads_seqd`
`lib_screen`
`lib_size`
`lib_vector`
`mag_cov_software`
`mid`
`nucl_acid_amp`
`nucl_acid_ext`
`num_replicons`
`number_contig`
`otu_class_appr`
`otu_db`
`otu_seq_comp_appr`
`pathogenicity`
`pcr_cond`
`pcr_primers`
`ploidy`
`pool_dna_extracts`
`pred_genome_struc`
`pred_genome_type`
`project_name`
`propagation`
`reassembly_bin`
`ref_biomaterial`
`ref_db`
`rel_to_oxygen`
`samp_collect_device`
`samp_collect_method`
`samp_mat_process`
`samp_name`
`samp_size`
`samp_vol_we_dna_ext`
`sc_lysis_approach`
`sc_lysis_method`
`seq_meth`
`seq_quality_check`
`sieving`
`sim_search_meth`
`size_frac`
`sop`
`sort_tech`
`source_mat_id`
`source_uvig`
`specific_host`
`subspecf_gen_lin`
`target_gene`
`target_subfragment`
`tax_class`
`tax_ident`
`trna_ext_software`
`trnas`
`trophic_level`
`vir_ident_software`
`virus_enrich_appr`
`wga_amp_appr`
`wga_amp_kit`

Field Summary

Fields
Modifier and Type Field and Description

String[] alternatives

Fields
Modifier and Type	Field and Description
`String[]`	`alternatives`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`String[]`	`alternativeNames()`
`boolean`	`isClass()` Informs if a term is generally used as a class term, i.e.
`URI`	`namespace()` The namespace the terms are in.
`String`	`prefix()` A unique standard prefix representing the namespace.
`String`	`qualifiedName()` The full qualified term uri including the namespace.
`String`	`simpleName()` The simple term name without any namespace or paths.
`String`	`toString()`
`static MixsTerm`	`valueOf(String name)` Returns the enum constant of this type with the specified name.
`static MixsTerm[]`	`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
compareTo, equals, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.gbif.dwc.terms.Term
prefixedName

Enum Constant Detail

samp_size
```
public static final MixsTerm samp_size
```

samp_collect_device

public static final MixsTerm samp_collect_device

isol_growth_condt

public static final MixsTerm isol_growth_condt

contam_screen_input

public static final MixsTerm contam_screen_input

wga_amp_kit

public static final MixsTerm wga_amp_kit

experimental_factor

public static final MixsTerm experimental_factor

env_broad_scale

public static final MixsTerm env_broad_scale

env_local_scale

public static final MixsTerm env_local_scale

env_medium

public static final MixsTerm env_medium

rel_to_oxygen

public static final MixsTerm rel_to_oxygen

samp_mat_process

public static final MixsTerm samp_mat_process

size_frac
```
public static final MixsTerm size_frac
```

subspecf_gen_lin

public static final MixsTerm subspecf_gen_lin

ploidy
```
public static final MixsTerm ploidy
```

num_replicons

public static final MixsTerm num_replicons

extrachrom_elements

public static final MixsTerm extrachrom_elements

estimated_size

public static final MixsTerm estimated_size

ref_biomaterial

public static final MixsTerm ref_biomaterial

source_mat_id

public static final MixsTerm source_mat_id

pathogenicity

public static final MixsTerm pathogenicity

biotic_relationship

public static final MixsTerm biotic_relationship

specific_host

public static final MixsTerm specific_host

host_spec_range

public static final MixsTerm host_spec_range

host_disease_stat

public static final MixsTerm host_disease_stat

trophic_level

public static final MixsTerm trophic_level

propagation

public static final MixsTerm propagation

encoded_traits

public static final MixsTerm encoded_traits

source_uvig

public static final MixsTerm source_uvig

virus_enrich_appr

public static final MixsTerm virus_enrich_appr

nucl_acid_ext

public static final MixsTerm nucl_acid_ext

nucl_acid_amp

public static final MixsTerm nucl_acid_amp

lib_size
```
public static final MixsTerm lib_size
```

lib_reads_seqd

public static final MixsTerm lib_reads_seqd

lib_layout

public static final MixsTerm lib_layout

lib_vector

public static final MixsTerm lib_vector

lib_screen

public static final MixsTerm lib_screen

target_gene

public static final MixsTerm target_gene

target_subfragment

public static final MixsTerm target_subfragment

pcr_primers

public static final MixsTerm pcr_primers

mid
```
public static final MixsTerm mid
```

adapters
```
public static final MixsTerm adapters
```

pcr_cond
```
public static final MixsTerm pcr_cond
```

seq_meth
```
public static final MixsTerm seq_meth
```

seq_quality_check

public static final MixsTerm seq_quality_check

chimera_check

public static final MixsTerm chimera_check

tax_ident
```
public static final MixsTerm tax_ident
```

sc_lysis_method

public static final MixsTerm sc_lysis_method

wga_amp_appr

public static final MixsTerm wga_amp_appr

assembly_qual

public static final MixsTerm assembly_qual

assembly_name

public static final MixsTerm assembly_name

assembly_software

public static final MixsTerm assembly_software

annot
```
public static final MixsTerm annot
```

number_contig

public static final MixsTerm number_contig

feat_pred
```
public static final MixsTerm feat_pred
```

ref_db
```
public static final MixsTerm ref_db
```

sim_search_meth

public static final MixsTerm sim_search_meth

tax_class
```
public static final MixsTerm tax_class
```

_16s_recover

public static final MixsTerm _16s_recover

_16s_recover_software

public static final MixsTerm _16s_recover_software

trnas
```
public static final MixsTerm trnas
```

trna_ext_software

public static final MixsTerm trna_ext_software

compl_score

public static final MixsTerm compl_score

compl_software

public static final MixsTerm compl_software

compl_appr

public static final MixsTerm compl_appr

contam_score

public static final MixsTerm contam_score

contam_screen_param

public static final MixsTerm contam_screen_param

decontam_software

public static final MixsTerm decontam_software

sort_tech
```
public static final MixsTerm sort_tech
```

sc_lysis_approach

public static final MixsTerm sc_lysis_approach

bin_param
```
public static final MixsTerm bin_param
```

bin_software

public static final MixsTerm bin_software

reassembly_bin

public static final MixsTerm reassembly_bin

mag_cov_software

public static final MixsTerm mag_cov_software

vir_ident_software

public static final MixsTerm vir_ident_software

pred_genome_type

public static final MixsTerm pred_genome_type

pred_genome_struc

public static final MixsTerm pred_genome_struc

detec_type

public static final MixsTerm detec_type

otu_class_appr

public static final MixsTerm otu_class_appr

otu_seq_comp_appr

public static final MixsTerm otu_seq_comp_appr

otu_db
```
public static final MixsTerm otu_db
```

host_pred_appr

public static final MixsTerm host_pred_appr

host_pred_est_acc

public static final MixsTerm host_pred_est_acc

sop
```
public static final MixsTerm sop
```

associated_resource

public static final MixsTerm associated_resource

project_name

public static final MixsTerm project_name

samp_vol_we_dna_ext

public static final MixsTerm samp_vol_we_dna_ext

sieving
```
public static final MixsTerm sieving
```

pool_dna_extracts

public static final MixsTerm pool_dna_extracts

samp_name
```
public static final MixsTerm samp_name
```

samp_collect_method

public static final MixsTerm samp_collect_method

Field Detail
- alternatives
```
public final String[] alternatives
```

Method Detail
- values
```
public static MixsTerm[] values()
```
  Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
```
for (MixsTerm c : MixsTerm.values())
    System.out.println(c);
```
  Returns:
  
  an array containing the constants of this enum type, in the order they are declared
- valueOf
```
public static MixsTerm valueOf(String name)
```
  Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
  
  Parameters:
  
  name - the name of the enum constant to be returned.
  
  Returns:
  
  the enum constant with the specified name
  
  Throws:
  
  IllegalArgumentException - if this enum type has no constant with the specified name
  
  NullPointerException - if the argument is null
- toString
```
public String toString()
```
  Overrides:
  
  toString in class Enum<MixsTerm>
- simpleName
```
public String simpleName()
```
  Description copied from interface: Term
  
  The simple term name without any namespace or paths. For example scientificName.
  
  Specified by:
  
  simpleName in interface Term
- alternativeNames
```
public String[] alternativeNames()
```
  Specified by:
  
  alternativeNames in interface AlternativeNames
  
  Returns:
  
  array of simple, alternative term names
- qualifiedName
```
public String qualifiedName()
```
  Description copied from interface: Term
  
  The full qualified term uri including the namespace. For example http://rs.tdwg.org/dwc/terms/scientificName.
  
  Specified by:
  
  qualifiedName in interface Term
- isClass
```
public boolean isClass()
```
  Description copied from interface: Term
  
  Informs if a term is generally used as a class term, i.e. defining rowTypes not properties. For example VernacularName, Taxon or Occurrence
  
  Specified by:
  
  isClass in interface Term
  
  Returns:
  
  true if the term is defining a class instead of a property, e.g. Taxon
- prefix
```
public String prefix()
```
  Description copied from interface: Term
  
  A unique standard prefix representing the namespace. For example dwc.
  
  Specified by:
  
  prefix in interface Term
- namespace
```
public URI namespace()
```
  Description copied from interface: Term
  
  The namespace the terms are in. Default implementations here expect the namespace to end with a slash.
  
  Specified by:
  
  namespace in interface Term

Enum MixsTerm

Enum Constant Summary

Field Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Methods inherited from interface org.gbif.dwc.terms.Term

Enum Constant Detail

samp_size

samp_collect_device

isol_growth_condt

contam_screen_input

wga_amp_kit

experimental_factor

env_broad_scale

env_local_scale

env_medium

rel_to_oxygen

samp_mat_process

size_frac

subspecf_gen_lin

ploidy

num_replicons

extrachrom_elements

estimated_size

ref_biomaterial

source_mat_id

pathogenicity

biotic_relationship

specific_host

host_spec_range

host_disease_stat

trophic_level

propagation

encoded_traits

source_uvig

virus_enrich_appr

nucl_acid_ext

nucl_acid_amp

lib_size

lib_reads_seqd

lib_layout

lib_vector

lib_screen

target_gene

target_subfragment

pcr_primers

mid

adapters

pcr_cond

seq_meth

seq_quality_check

chimera_check

tax_ident

sc_lysis_method

wga_amp_appr

assembly_qual

assembly_name

assembly_software

annot

number_contig

feat_pred

ref_db

sim_search_meth

tax_class

_16s_recover

_16s_recover_software

trnas

trna_ext_software

compl_score

compl_software

compl_appr

contam_score

contam_screen_param

decontam_software

sort_tech

sc_lysis_approach

bin_param

bin_software

reassembly_bin